Sed0026142 (gene) Chayote v1

Overview
NameSed0026142
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG11: 33793098 .. 33793286 (-)
RNA-Seq ExpressionSed0026142
SyntenySed0026142
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTTCAGAAGTTTGTTGAAATGGGTCTAATTTGGGTTGCTTGCTTGCTTGTTGCCATGGCTACAGAAGCACAAGCTCAGGACTATGGCTCCAAAAACTCAGCTGAGACCACATCTTCCCATGCAATGCCTCTCAAGTTTCTGGGTCTTGCTGTTTCGTTTTTTGTACTCAAACAGATGGTTTGA

mRNA sequence

ATGGGTGTTCAGAAGTTTGTTGAAATGGGTCTAATTTGGGTTGCTTGCTTGCTTGTTGCCATGGCTACAGAAGCACAAGCTCAGGACTATGGCTCCAAAAACTCAGCTGAGACCACATCTTCCCATGCAATGCCTCTCAAGTTTCTGGGTCTTGCTGTTTCGTTTTTTGTACTCAAACAGATGGTTTGA

Coding sequence (CDS)

ATGGGTGTTCAGAAGTTTGTTGAAATGGGTCTAATTTGGGTTGCTTGCTTGCTTGTTGCCATGGCTACAGAAGCACAAGCTCAGGACTATGGCTCCAAAAACTCAGCTGAGACCACATCTTCCCATGCAATGCCTCTCAAGTTTCTGGGTCTTGCTGTTTCGTTTTTTGTACTCAAACAGATGGTTTGA

Protein sequence

MGVQKFVEMGLIWVACLLVAMATEAQAQDYGSKNSAETTSSHAMPLKFLGLAVSFFVLKQMV
Homology
BLAST of Sed0026142 vs. NCBI nr
Match: KAA0037478.1 (hypothetical protein E6C27_scaffold277G00690 [Cucumis melo var. makuwa] >TYK01954.1 hypothetical protein E5676_scaffold808G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 9.0e-10
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 1  MGVQKFVEMGLIWVACLLVAMATEAQAQDYGSKNSAETTSSHAMPLKFLGLAVSFFVLKQ 60
          M +QK + M LIWVACLL++ ATEA+AQ YGS ++ E   SH+M +KFLGL VSF VLK+
Sbjct: 1  MNLQKCLGMVLIWVACLLISTATEAEAQSYGSSDAPEALCSHSMLVKFLGLLVSFLVLKE 60

Query: 61 MV 63
          +V
Sbjct: 61 IV 62

BLAST of Sed0026142 vs. NCBI nr
Match: KAE8648896.1 (hypothetical protein Csa_008661 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 5.7e-04
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 1  MGVQKFVEMGLIWVACLLVAMATEAQAQDYGSKNSAETTSSHAM 45
          M ++K + M LIWVACLLV+MATEA+AQ YGS ++ E   SH+M
Sbjct: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSM 44

BLAST of Sed0026142 vs. ExPASy TrEMBL
Match: A0A5A7T3W0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00460 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-10
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 1  MGVQKFVEMGLIWVACLLVAMATEAQAQDYGSKNSAETTSSHAMPLKFLGLAVSFFVLKQ 60
          M +QK + M LIWVACLL++ ATEA+AQ YGS ++ E   SH+M +KFLGL VSF VLK+
Sbjct: 1  MNLQKCLGMVLIWVACLLISTATEAEAQSYGSSDAPEALCSHSMLVKFLGLLVSFLVLKE 60

Query: 61 MV 63
          +V
Sbjct: 61 IV 62

BLAST of Sed0026142 vs. ExPASy TrEMBL
Match: A0A0A0KS19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630950 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 1  MGVQKFVEMGLIWVACLLVAMATEAQAQDYGSKNSAETTSSHAMPLK 48
          M ++K + M LIWVACLLV+MATEA+AQ YGS ++ E   SH+M  K
Sbjct: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFK 47

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0037478.19.0e-1059.68hypothetical protein E6C27_scaffold277G00690 [Cucumis melo var. makuwa] >TYK0195... [more]
KAE8648896.15.7e-0459.09hypothetical protein Csa_008661 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T3W04.4e-1059.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KS191.6e-0457.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630950 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0026142.1Sed0026142.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane