Sed0026122 (gene) Chayote v1

Overview


Name	Sed0026122
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG01: 67235679 .. 67238167 (-)
RNA-Seq Expression	Sed0026122
Synteny	Sed0026122

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTCCTCAAACTCCATCCCCTCCTCATCTTTATCCTCAAGCTCTTCAACTTAAGCTTTATCAAGCCTTCATATTTTCAATTCCCATCCTATTTTCCATTATTCTTTTTCTTCTTTTCTACTTGTTTTATCTCAAAAGAAGAGCTTCTTCTCTTTCTTCCTCTTCTTCTTCTCCCCCAATTCTTCCAACTACTTCCAATAGGCTCACTCTCTATGTCACAACTGTAAGCATAACTCCTCTGTTTTTTATATCTTGTGAATTTGCCTTTTTTTGTGTCCTATTCATAGAAATTTGGAATTTCTAAAGTGTGTTCCTTAAAAGGTCTCGAGTTTGAAACCCAAGAATGAATTTAATTGTAAAATCTCTTATTGTCTTCTGGGTCGTGTTTTGGAACGGGTGAGGGTACTCGAGTATGTTGGGAGGGGAAGTTCCAATTTTTTGTTGTAAAAAGAAAACAAATGCTTACTTTTTGCTTATTTGGTGTCTCCATTGCTGAATTTTACTTTTGGGATTAGAGAATCTATGGAAAGTTTGAAGCTTTAAATGTTCATTTTTCTTTTTTGGGAATCGGGTGTTTGATTAGCAGCTGAATTGGTCTGAATTTGTGCCATTTTTTTGTTCTTGTTAATGTTGTTGATATTTGATTGCATAGGCTTGTCAAGTGGATTTGAAGGCAGATAATCCCATAGACAAACTTCCCAAGATCCTTTTCAATGAAGAGCTAAGGAACAGAGATTCTCTGTGAGTATAACCCTTTTCTGACAGTTAAATCTTTGTTGCCCTTTTGAGTTCTTTTGAAACTAAAAAGTGGTTCCTTTAAATGGTGTTTTGGGTAACATGAACTGAAGAATTAGTTTCCTTTCATAGAATTGCTTAAACTAATCTTTATTGTTTAAAACGTTTCAATTTAGTCTTTTGTAAGTATTTTTCAACTTAGTTCCTAGTTGTTGAATGCTGAAGTAATTGATTATAAACTTCCATGAAAATGAATATTTAGTGATTTGATAGATATTTTAAAATAATAAAAGGCCATCAAAGAGAAGAAAAATAGAAGTTCTACTAATTCCCTAAAAATATTAGAAAATGAATTAGAAATGCTTATCTGATAAGCTAATTCTCTTTTAAATTTAATCTTATGCCGTGGAAGTTTGTTCGCAAAAACTAATAAAAACATAACTTTAGTCGTATAATATATAACTTAGTAATCAATAGATTATTGTTGTTTAGTATTTCAGTAGATACCAGTTGGTTATGGTTTCAAGTCTTAAGTGTGATTGAATTGAAAAATAAATAAATAGAATAGCCTAAAGTTAATGTGTTACCTCGACATTGCACAAGAAGTTGAAAATGCAAATAAAAGATAAGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATAAACAGTCAAGAGATAAGAGATGGAAGGTTAGTGACTTAAATAGGGAGGACACATAACAAACAATATAAAGCTTAATCCTTTTCAAATCCTTTGATTCCTTTTTTAATTATTGTTTTTCTTTCAAGAAGTGGAATCTCTCATAACATCCGCTCTTTAATTTTTCAAAAGTGGCTTTACAACTTTGGGTTTTAAAGTTGCTTTTGTTTTTATTTACTTTTCCTTTTCTCAAAGGTGTTGCATGTAGAACCTTAAGCCGACAATATTGTTATTGAAGATGAAGGGCATGCTTGACGTTTCTTTTTCTTTTTTTTCCCCCAAATTTTGTAAATAACTTCCAATTTTAGAGAATTCTTGATTCTTTTGTTACTTTAATAAACAGCTTTAAAAAGAACAATTCAAATCCCATTTTGCATTTTAAAGTTATCTTATTCTATTTGCATCTAAACTACAACGCATTTGACCCAAACACAACTCTACTAGCTAGGTATTCATATGAACCTCTCTTCACAAGGTTTATAAGTTCAATATGAGGTTGACTGAAAATCTCAATGTCGCTTTCAAAAAAAAAAAAAAAAATCAAATAGTTTTCCTTATTTTACTTGTAAAACAATCTCTCCCATTAGGGTAGAAAGAAAGATTGGGATTTTAGGTCAATCTCATGTTATCCTTAGGATATGTGGGGTTGGAAATCAACACTAGAACAGAAGAAAAAAAAAACCACTAACTTTCTTGTCCAATTAACAGGTGTTGCGTCTGCTTGGGAGAGTTCGAGATAAAAGAGGAATTGTTGCAAGTCCCATCATGCAAACATGTGTTTCATATTGATTGCATGAATCACTGGCTCACCTTCAACTCAACTTGCCCTCTCTGTCGATGCTCGGTTGTTCCGACCCGACATTCTGATCCCGCCGCCGTTGCACTGTCCCCGCCTCGGCCACTGGCTGCCTCAACAGAGCTTCCCTTCACTTCCAACCAGACTGCAGAGATGGTATCATATTCACTCCAACATCCGCAGCTGCAACAACAGGAAGGATCAAGTCAGAGTATATGCTGA

mRNA sequence

ATGGGGTTTCCTCAAACTCCATCCCCTCCTCATCTTTATCCTCAAGCTCTTCAACTTAAGCTTTATCAAGCCTTCATATTTTCAATTCCCATCCTATTTTCCATTATTCTTTTTCTTCTTTTCTACTTGTTTTATCTCAAAAGAAGAGCTTCTTCTCTTTCTTCCTCTTCTTCTTCTCCCCCAATTCTTCCAACTACTTCCAATAGGCTCACTCTCTATGTCACAACTGCTTGTCAAGTGGATTTGAAGGCAGATAATCCCATAGACAAACTTCCCAAGATCCTTTTCAATGAAGAGCTAAGGAACAGAGATTCTCTGTGTTGCGTCTGCTTGGGAGAGTTCGAGATAAAAGAGGAATTGTTGCAAGTCCCATCATGCAAACATGTGTTTCATATTGATTGCATGAATCACTGGCTCACCTTCAACTCAACTTGCCCTCTCTGTCGATGCTCGGTTGTTCCGACCCGACATTCTGATCCCGCCGCCGTTGCACTGTCCCCGCCTCGGCCACTGGCTGCCTCAACAGAGCTTCCCTTCACTTCCAACCAGACTGCAGAGATGGTATCATATTCACTCCAACATCCGCAGCTGCAACAACAGGAAGGATCAAGTCAGAGTATATGCTGA

Coding sequence (CDS)

ATGGGGTTTCCTCAAACTCCATCCCCTCCTCATCTTTATCCTCAAGCTCTTCAACTTAAGCTTTATCAAGCCTTCATATTTTCAATTCCCATCCTATTTTCCATTATTCTTTTTCTTCTTTTCTACTTGTTTTATCTCAAAAGAAGAGCTTCTTCTCTTTCTTCCTCTTCTTCTTCTCCCCCAATTCTTCCAACTACTTCCAATAGGCTCACTCTCTATGTCACAACTGCTTGTCAAGTGGATTTGAAGGCAGATAATCCCATAGACAAACTTCCCAAGATCCTTTTCAATGAAGAGCTAAGGAACAGAGATTCTCTGTGTTGCGTCTGCTTGGGAGAGTTCGAGATAAAAGAGGAATTGTTGCAAGTCCCATCATGCAAACATGTGTTTCATATTGATTGCATGAATCACTGGCTCACCTTCAACTCAACTTGCCCTCTCTGTCGATGCTCGGTTGTTCCGACCCGACATTCTGATCCCGCCGCCGTTGCACTGTCCCCGCCTCGGCCACTGGCTGCCTCAACAGAGCTTCCCTTCACTTCCAACCAGACTGCAGAGATGGTATCATATTCACTCCAACATCCGCAGCTGCAACAACAGGAAGGATCAAGTCAGAGTATATGCTGA

Protein sequence

MGFPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSPPILPTTSNRLTLYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMNHWLTFNSTCPLCRCSVVPTRHSDPAAVALSPPRPLAASTELPFTSNQTAEMVSYSLQHPQLQQQEGSSQSIC

Homology

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BLAST of Sed0026122 vs. NCBI nr
Match: XP_022928899.1 (probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata])

HSP 1 Score: 353.2 bits (905), Expect = 1.5e-93
Identity = 187/214 (87.38%), Postives = 191/214 (89.25%), Query Frame = 0


Query: 1   MGFPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS- 60
           MG PQTP+PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 
Sbjct: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60

Query: 61  ---PPILPTTSNRLTLYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEI 120
              PPILPTTSN LTLYVTTACQVDLKADNP+DKLPKILFNEELR RDSLCCVCLGEFEI
Sbjct: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLTFNSTCPLCRCSVVP-TRHSDPAAVALSPPRPLAAST 180
           KEELLQVPSCKHVFHIDCMNHWLT NSTCPLCRCSV+P TR  DP  V   PP P A S+
Sbjct: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSS 180

Query: 181 ELPFTSNQTAEMVSYSLQHPQL-QQQEGSSQSIC 209
           ELP TSNQTAEM SYSL HPQL QQQEGSSQSIC
Sbjct: 181 ELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 214

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BLAST of Sed0026122 vs. NCBI nr
Match: XP_022157001.1 (probable E3 ubiquitin-protein ligase RHA4A [Momordica charantia])

HSP 1 Score: 349.4 bits (895), Expect = 2.2e-92
Identity = 184/210 (87.62%), Postives = 190/210 (90.48%), Query Frame = 0


Query: 1   MGFPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLS-SSSSS 60
           MG PQTP+PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLS SSSSS
Sbjct: 1   MGLPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSFSSSSS 60

Query: 61  PPILPTTSNRLTLYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEIKEE 120
           PPILPT+SN LTLYVTTACQVD KADNPI+KLPKILFNEELR RDSLCCVCLGEFEIKEE
Sbjct: 61  PPILPTSSNALTLYVTTACQVDSKADNPIEKLPKILFNEELRARDSLCCVCLGEFEIKEE 120

Query: 121 LLQVPSCKHVFHIDCMNHWLTFNSTCPLCRCSVV-PTRHSDPAAVALSPPRPLAASTELP 180
           LLQVPSCKHVFHIDCMNHWLT NSTCPLCRCSV+ P R  DP   A SP  PL   +ELP
Sbjct: 121 LLQVPSCKHVFHIDCMNHWLTTNSTCPLCRCSVIPPIRCPDPPVAAPSPTLPL--PSELP 180

Query: 181 FTSNQTAEMVSYSLQHPQLQQQEGSSQSIC 209
            TSNQTAEMVSYSL+HPQLQQQEGSSQSIC
Sbjct: 181 LTSNQTAEMVSYSLRHPQLQQQEGSSQSIC 208

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BLAST of Sed0026122 vs. NCBI nr
Match: KAG6579565.1 (30S ribosomal protein S6 alpha, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 348.2 bits (892), Expect = 4.9e-92
Identity = 185/211 (87.68%), Postives = 189/211 (89.57%), Query Frame = 0


Query: 4   PQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS---- 63
           PQTP+PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS    
Sbjct: 192 PQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSF 251

Query: 64  PPILPTTSNRLTLYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEIKEE 123
           PPILPTTSN LTLYVTTACQVDLKADNP+DKLPKILFNEELR RDSLCCVCLGEFEIKEE
Sbjct: 252 PPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKEE 311

Query: 124 LLQVPSCKHVFHIDCMNHWLTFNSTCPLCRCSVVP-TRHSDPAAVALSPPRPLAASTELP 183
           LLQVPSCKHVFHIDCMNHWLT NSTCPLCRCSV+P TR  DP  V   PP P A S+ELP
Sbjct: 312 LLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSSELP 371

Query: 184 FTSNQTAEMVSYSLQHPQL-QQQEGSSQSIC 209
            TSNQTAEM SYSL HPQL QQQEGSSQSIC
Sbjct: 372 PTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 402

[Close]

BLAST of Sed0026122 vs. NCBI nr
Match: XP_023534491.1 (probable E3 ubiquitin-protein ligase RHA4A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.9 bits (886), Expect = 2.4e-91
Identity = 187/220 (85.00%), Postives = 192/220 (87.27%), Query Frame = 0


Query: 1   MGFPQTP-SPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60
           MG PQTP +PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS
Sbjct: 1   MGVPQTPAAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60

Query: 61  ---PPILPTTSNRLTLYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEI 120
              PPILPTTSNRLTLYVTTAC+VDLKADNPIDKLPKI FNEELR+RDSLCCVCLGEFEI
Sbjct: 61  SSPPPILPTTSNRLTLYVTTACRVDLKADNPIDKLPKIFFNEELRSRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLTFNSTCPLCRCSVVP-TRHSDPAAVA-------LSPP 180
           KEELLQVPSCKHVFHIDCMN WL  NSTCPLCRCSV+P TR SDP  +          PP
Sbjct: 121 KEELLQVPSCKHVFHIDCMNLWLASNSTCPLCRCSVIPTTRCSDPPVLVPPQLTPPPPPP 180

Query: 181 RPLAASTELPFTSNQTAEMVSYSLQHPQLQQQEGSSQSIC 209
            PLAAS ELP  SNQTAEMVSYSLQHPQLQQQ GSSQSIC
Sbjct: 181 PPLAASLELPLASNQTAEMVSYSLQHPQLQQQIGSSQSIC 220

[Close]

BLAST of Sed0026122 vs. NCBI nr
Match: XP_022958025.1 (probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata])

HSP 1 Score: 345.1 bits (884), Expect = 4.1e-91
Identity = 186/219 (84.93%), Postives = 192/219 (87.67%), Query Frame = 0


Query: 1   MGFPQTP-SPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60
           MG PQTP +PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS
Sbjct: 1   MGVPQTPAAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60

Query: 61  --PPILPTTSNRLTLYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEIK 120
             PPILPTTSNRLTLYVTTAC+VDLKADNP+DKLPKI FNEELR+RDSLCCVCLGEFEIK
Sbjct: 61  SPPPILPTTSNRLTLYVTTACRVDLKADNPMDKLPKIFFNEELRSRDSLCCVCLGEFEIK 120

Query: 121 EELLQVPSCKHVFHIDCMNHWLTFNSTCPLCRCSVVP-TRHSDPAAVA-------LSPPR 180
           EELLQVPSCKHVFHIDCMN WL  NSTCPLCRCSV+P TR SDP  +          PP 
Sbjct: 121 EELLQVPSCKHVFHIDCMNLWLASNSTCPLCRCSVIPTTRCSDPPVLVPPQLTPPPPPPP 180

Query: 181 PLAASTELPFTSNQTAEMVSYSLQHPQLQQQEGSSQSIC 209
           PLAAS ELP  SNQTAEMVSYSLQHPQLQQQ GSSQSIC
Sbjct: 181 PLAASLELPLASNQTAEMVSYSLQHPQLQQQIGSSQSIC 219

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BLAST of Sed0026122 vs. ExPASy Swiss-Prot
Match: Q84TF5 (Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana OX=3702 GN=RHA4A PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.9e-49
Identity = 102/150 (68.00%), Postives = 123/150 (82.00%), Query Frame = 0


Query: 4   PQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSPPIL 63
           PQ+P  PHLYPQA+QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSL  SS SP IL
Sbjct: 4   PQSPITPHLYPQAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSL--SSPSPMIL 63

Query: 64  PTTSNRLT-LYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEIKEELLQ 123
           P +S+  T  ++ + C +D+K +   DKL  +LFNEEL  RDSLCCVCLGEFE+KEEL++
Sbjct: 64  PVSSSHQTSSHLPSVCLLDVKVELK-DKLHVVLFNEELGTRDSLCCVCLGEFELKEELVE 123

Query: 124 VPSCKHVFHIDCMNHWLTFNSTCPLCRCSV 153
           +P CKH+FH+DC++ WL  ++TCPLCR SV
Sbjct: 124 MPLCKHIFHLDCIHLWLYSHNTCPLCRSSV 150

[Close]

BLAST of Sed0026122 vs. ExPASy Swiss-Prot
Match: Q570X5 (RING-H2 finger protein ATL58 OS=Arabidopsis thaliana OX=3702 GN=ATL58 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.2e-26
Identity = 65/164 (39.63%), Postives = 97/164 (59.15%), Query Frame = 0


Query: 18  QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSPPILPTTSNRLTLYVTTA 77
           +LKLYQAFIFS+PI F+ I+  LFYL YL+R +S LSS       +P  S          
Sbjct: 19  ELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLGMRTTFIPGNS---------L 78

Query: 78  CQVDLKADNPI-DKLPKILFNEELRNRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMN 137
             ++L     + + LP ++F E     DS C VCLG+++  ++L Q+P CKH FH+DC++
Sbjct: 79  STIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCID 138

Query: 138 HWLTFNSTCPLCRCSVVPTR----HSDPAAVALSPPRPLAASTE 177
            WLT ++TCPLCR +++P+R      DP    +SP   +++  E
Sbjct: 139 LWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEEVSSQPE 173

[Close]

BLAST of Sed0026122 vs. ExPASy Swiss-Prot
Match: Q9SN28 (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-22
Identity = 60/155 (38.71%), Postives = 98/155 (63.23%), Query Frame = 0


Query: 4   PQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSS----S 63
           P+T +P +   ++ +LKLYQAFIFS+PI F+ I+  + Y+ YL+R +++    SS     
Sbjct: 12  PETYAPSN-STESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMRG 71

Query: 64  PPILPTTSNRLTLYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEIKEE 123
              +PT +N  T       ++ L  D   + LP +++ E    +DS C VCLG+++ +E+
Sbjct: 72  GTFVPTNNNLST------AELGLSKDIR-EMLPVVIYKESFIVKDSQCSVCLGDYQAEEK 131

Query: 124 LLQVPSCKHVFHIDCMNHWLTFNSTCPLCRCSVVP 155
           L Q+PSC H FH++C++ WLT ++TCPLCR S++P
Sbjct: 132 LQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIP 158

[Close]

BLAST of Sed0026122 vs. ExPASy Swiss-Prot
Match: Q9SN27 (E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.9e-16
Identity = 45/130 (34.62%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 25  FIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSPPILPTTSNRLTLYVTTACQVDLKA 84
           F F + +   +IL +L  L+ ++R +++    SS    +PT +N  T       ++ L  
Sbjct: 22  FTFIVCVPICVILIVLLVLYIMRRNSNTNVDWSSLGGFVPTNNNLST------AELGLSK 81

Query: 85  DNPIDKLPKILFNEELRNRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMNHWLTFNST 144
           D   + LP +++ E     D+ C VCLG+++ +E+L Q+PSC H FH++C++ WLT ++T
Sbjct: 82  DIR-EMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTT 141

Query: 145 CPLCRCSVVP 155
           CPLCR S++P
Sbjct: 142 CPLCRLSLIP 144

[Close]

BLAST of Sed0026122 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.3e-14
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 85  DNPIDKLPKILFNEELRNRDSLCC-VCLGEFEIKEELLQVPSCKHVFHIDCMNHWLTFNS 144
           ++ I   PKIL++E      + CC +CLG+++ K  L Q+P C H+FH+ C++ WL  N 
Sbjct: 124 EDTIQSYPKILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNP 183

Query: 145 TCPLCRCSVVPTRHSDPAAVALSPPRPLAAS 175
           TCP+CR S +PT  S P A  +    PLA+S
Sbjct: 184 TCPVCRTSPLPTPLSTPLAEVV----PLASS 210

[Close]

BLAST of Sed0026122 vs. ExPASy TrEMBL
Match: A0A6J1EM64 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111435669 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.4e-94
Identity = 187/214 (87.38%), Postives = 191/214 (89.25%), Query Frame = 0


Query: 1   MGFPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS- 60
           MG PQTP+PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 
Sbjct: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60

Query: 61  ---PPILPTTSNRLTLYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEI 120
              PPILPTTSN LTLYVTTACQVDLKADNP+DKLPKILFNEELR RDSLCCVCLGEFEI
Sbjct: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLTFNSTCPLCRCSVVP-TRHSDPAAVALSPPRPLAAST 180
           KEELLQVPSCKHVFHIDCMNHWLT NSTCPLCRCSV+P TR  DP  V   PP P A S+
Sbjct: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSS 180

Query: 181 ELPFTSNQTAEMVSYSLQHPQL-QQQEGSSQSIC 209
           ELP TSNQTAEM SYSL HPQL QQQEGSSQSIC
Sbjct: 181 ELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 214

[Close]

BLAST of Sed0026122 vs. ExPASy TrEMBL
Match: A0A6J1DWP0 (probable E3 ubiquitin-protein ligase RHA4A OS=Momordica charantia OX=3673 GN=LOC111023829 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.1e-92
Identity = 184/210 (87.62%), Postives = 190/210 (90.48%), Query Frame = 0


Query: 1   MGFPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLS-SSSSS 60
           MG PQTP+PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLS SSSSS
Sbjct: 1   MGLPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSFSSSSS 60

Query: 61  PPILPTTSNRLTLYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEIKEE 120
           PPILPT+SN LTLYVTTACQVD KADNPI+KLPKILFNEELR RDSLCCVCLGEFEIKEE
Sbjct: 61  PPILPTSSNALTLYVTTACQVDSKADNPIEKLPKILFNEELRARDSLCCVCLGEFEIKEE 120

Query: 121 LLQVPSCKHVFHIDCMNHWLTFNSTCPLCRCSVV-PTRHSDPAAVALSPPRPLAASTELP 180
           LLQVPSCKHVFHIDCMNHWLT NSTCPLCRCSV+ P R  DP   A SP  PL   +ELP
Sbjct: 121 LLQVPSCKHVFHIDCMNHWLTTNSTCPLCRCSVIPPIRCPDPPVAAPSPTLPL--PSELP 180

Query: 181 FTSNQTAEMVSYSLQHPQLQQQEGSSQSIC 209
            TSNQTAEMVSYSL+HPQLQQQEGSSQSIC
Sbjct: 181 LTSNQTAEMVSYSLRHPQLQQQEGSSQSIC 208

[Close]

BLAST of Sed0026122 vs. ExPASy TrEMBL
Match: A0A6J1H2A4 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111459379 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.0e-91
Identity = 186/219 (84.93%), Postives = 192/219 (87.67%), Query Frame = 0


Query: 1   MGFPQTP-SPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60
           MG PQTP +PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS
Sbjct: 1   MGVPQTPAAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60

Query: 61  --PPILPTTSNRLTLYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEIK 120
             PPILPTTSNRLTLYVTTAC+VDLKADNP+DKLPKI FNEELR+RDSLCCVCLGEFEIK
Sbjct: 61  SPPPILPTTSNRLTLYVTTACRVDLKADNPMDKLPKIFFNEELRSRDSLCCVCLGEFEIK 120

Query: 121 EELLQVPSCKHVFHIDCMNHWLTFNSTCPLCRCSVVP-TRHSDPAAVA-------LSPPR 180
           EELLQVPSCKHVFHIDCMN WL  NSTCPLCRCSV+P TR SDP  +          PP 
Sbjct: 121 EELLQVPSCKHVFHIDCMNLWLASNSTCPLCRCSVIPTTRCSDPPVLVPPQLTPPPPPPP 180

Query: 181 PLAASTELPFTSNQTAEMVSYSLQHPQLQQQEGSSQSIC 209
           PLAAS ELP  SNQTAEMVSYSLQHPQLQQQ GSSQSIC
Sbjct: 181 PLAASLELPLASNQTAEMVSYSLQHPQLQQQIGSSQSIC 219

[Close]

BLAST of Sed0026122 vs. ExPASy TrEMBL
Match: A0A6J1I2V6 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita maxima OX=3661 GN=LOC111469090 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 5.8e-91
Identity = 184/214 (85.98%), Postives = 189/214 (88.32%), Query Frame = 0


Query: 1   MGFPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS- 60
           MG PQTP+PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 
Sbjct: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60

Query: 61  ---PPILPTTSNRLTLYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEI 120
              PPILPTTSN LTLYVTTACQVDLKADNP+DKLPKILFNEELR RDSLCCVCLGEFEI
Sbjct: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLTFNSTCPLCRCSVVP-TRHSDPAAVALSPPRPLAAST 180
           KEELLQVPSCKHVFHIDCMNHWLT NSTCPLCRCSV+P TR  D   V   PP P A S+
Sbjct: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDLPVVVSPPPPPSAGSS 180

Query: 181 ELPFTSNQTAEMVSYSLQHPQL-QQQEGSSQSIC 209
           E P TS+QTAEM SYSL HPQL QQQEGSSQSIC
Sbjct: 181 EPPPTSDQTAEMRSYSLLHPQLQQQQEGSSQSIC 214

[Close]

BLAST of Sed0026122 vs. ExPASy TrEMBL
Match: A0A6J1K5R3 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita maxima OX=3661 GN=LOC111490976 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.2e-90
Identity = 185/218 (84.86%), Postives = 191/218 (87.61%), Query Frame = 0


Query: 1   MGFPQT-PSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60
           MG PQT  +PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS
Sbjct: 1   MGVPQTSAAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60

Query: 61  ---PPILPTTSNRLTLYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEI 120
              PPILPTTSNRLTLYVTTAC+VDLKA+NPIDKLPKI FNEELR+RDSLCCVCLGEFEI
Sbjct: 61  SPPPPILPTTSNRLTLYVTTACRVDLKANNPIDKLPKIFFNEELRSRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLTFNSTCPLCRCSVVP-TRHSDPAA-----VALSPPRP 180
           KEELLQVPSCKHVFHIDCMN WL  NSTCPLCRCSV+P TR SDP       +   PP P
Sbjct: 121 KEELLQVPSCKHVFHIDCMNLWLASNSTCPLCRCSVIPTTRCSDPPVLVPPQLTPPPPPP 180

Query: 181 LAASTELPFTSNQTAEMVSYSLQHPQLQQQEGSSQSIC 209
           LAAS ELP  SNQTAEMVSYSLQHPQLQQQ GSSQSIC
Sbjct: 181 LAASLELPLASNQTAEMVSYSLQHPQLQQQIGSSQSIC 218

[Close]

BLAST of Sed0026122 vs. TAIR 10
Match: AT4G24015.1 (RING/U-box superfamily protein )

HSP 1 Score: 195.3 bits (495), Expect = 4.9e-50
Identity = 102/150 (68.00%), Postives = 123/150 (82.00%), Query Frame = 0


Query: 4   PQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSPPIL 63
           PQ+P  PHLYPQA+QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSL  SS SP IL
Sbjct: 4   PQSPITPHLYPQAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSL--SSPSPMIL 63

Query: 64  PTTSNRLT-LYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEIKEELLQ 123
           P +S+  T  ++ + C +D+K +   DKL  +LFNEEL  RDSLCCVCLGEFE+KEEL++
Sbjct: 64  PVSSSHQTSSHLPSVCLLDVKVELK-DKLHVVLFNEELGTRDSLCCVCLGEFELKEELVE 123

Query: 124 VPSCKHVFHIDCMNHWLTFNSTCPLCRCSV 153
           +P CKH+FH+DC++ WL  ++TCPLCR SV
Sbjct: 124 MPLCKHIFHLDCIHLWLYSHNTCPLCRSSV 150

[Close]

BLAST of Sed0026122 vs. TAIR 10
Match: AT1G33480.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-27
Identity = 65/164 (39.63%), Postives = 97/164 (59.15%), Query Frame = 0


Query: 18  QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSPPILPTTSNRLTLYVTTA 77
           +LKLYQAFIFS+PI F+ I+  LFYL YL+R +S LSS       +P  S          
Sbjct: 19  ELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLGMRTTFIPGNS---------L 78

Query: 78  CQVDLKADNPI-DKLPKILFNEELRNRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMN 137
             ++L     + + LP ++F E     DS C VCLG+++  ++L Q+P CKH FH+DC++
Sbjct: 79  STIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCID 138

Query: 138 HWLTFNSTCPLCRCSVVPTR----HSDPAAVALSPPRPLAASTE 177
            WLT ++TCPLCR +++P+R      DP    +SP   +++  E
Sbjct: 139 LWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEEVSSQPE 173

[Close]

BLAST of Sed0026122 vs. TAIR 10
Match: AT4G10150.1 (RING/U-box superfamily protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-23
Identity = 60/155 (38.71%), Postives = 98/155 (63.23%), Query Frame = 0


Query: 4   PQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSS----S 63
           P+T +P +   ++ +LKLYQAFIFS+PI F+ I+  + Y+ YL+R +++    SS     
Sbjct: 12  PETYAPSN-STESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMRG 71

Query: 64  PPILPTTSNRLTLYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEIKEE 123
              +PT +N  T       ++ L  D   + LP +++ E    +DS C VCLG+++ +E+
Sbjct: 72  GTFVPTNNNLST------AELGLSKDIR-EMLPVVIYKESFIVKDSQCSVCLGDYQAEEK 131

Query: 124 LLQVPSCKHVFHIDCMNHWLTFNSTCPLCRCSVVP 155
           L Q+PSC H FH++C++ WLT ++TCPLCR S++P
Sbjct: 132 LQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIP 158

[Close]

BLAST of Sed0026122 vs. TAIR 10
Match: AT4G10160.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-17
Identity = 45/130 (34.62%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 25  FIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSPPILPTTSNRLTLYVTTACQVDLKA 84
           F F + +   +IL +L  L+ ++R +++    SS    +PT +N  T       ++ L  
Sbjct: 22  FTFIVCVPICVILIVLLVLYIMRRNSNTNVDWSSLGGFVPTNNNLST------AELGLSK 81

Query: 85  DNPIDKLPKILFNEELRNRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMNHWLTFNST 144
           D   + LP +++ E     D+ C VCLG+++ +E+L Q+PSC H FH++C++ WLT ++T
Sbjct: 82  DIR-EMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTT 141

Query: 145 CPLCRCSVVP 155
           CPLCR S++P
Sbjct: 142 CPLCRLSLIP 144

[Close]

BLAST of Sed0026122 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 5.2e-15
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 85  DNPIDKLPKILFNEELRNRDSLCC-VCLGEFEIKEELLQVPSCKHVFHIDCMNHWLTFNS 144
           ++ I   PKIL++E      + CC +CLG+++ K  L Q+P C H+FH+ C++ WL  N 
Sbjct: 124 EDTIQSYPKILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNP 183

Query: 145 TCPLCRCSVVPTRHSDPAAVALSPPRPLAAS 175
           TCP+CR S +PT  S P A  +    PLA+S
Sbjct: 184 TCPVCRTSPLPTPLSTPLAEVV----PLASS 210

The following BLAST results are available for this feature:

BLAST of Sed0026122 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928899.1	1.5e-93	87.38	probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata]	[more]
XP_022157001.1	2.2e-92	87.62	probable E3 ubiquitin-protein ligase RHA4A [Momordica charantia]	[more]
KAG6579565.1	4.9e-92	87.68	30S ribosomal protein S6 alpha, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_023534491.1	2.4e-91	85.00	probable E3 ubiquitin-protein ligase RHA4A [Cucurbita pepo subsp. pepo]	[more]
XP_022958025.1	4.1e-91	84.93	probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata]	[more]

BLAST of Sed0026122 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TF5	6.9e-49	68.00	Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q570X5	2.2e-26	39.63	RING-H2 finger protein ATL58 OS=Arabidopsis thaliana OX=3702 GN=ATL58 PE=2 SV=1	[more]
Q9SN28	1.9e-22	38.71	RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1	[more]
Q9SN27	5.9e-16	34.62	E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 ...	[more]
Q8RX29	7.3e-14	41.76	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]

BLAST of Sed0026122 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EM64	7.4e-94	87.38	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1DWP0	1.1e-92	87.62	probable E3 ubiquitin-protein ligase RHA4A OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1H2A4	2.0e-91	84.93	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1I2V6	5.8e-91	85.98	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1K5R3	2.2e-90	84.86	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Sed0026122 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24015.1	4.9e-50	68.00	RING/U-box superfamily protein	[more]
AT1G33480.1	1.5e-27	39.63	RING/U-box superfamily protein	[more]
AT4G10150.1	1.4e-23	38.71	RING/U-box superfamily protein	[more]
AT4G10160.1	4.2e-17	34.62	RING/U-box superfamily protein	[more]
AT2G35910.1	5.2e-15	41.76	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 107..148 e-value: 0.0021 score: 27.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 107..149 e-value: 8.1E-12 score: 45.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 107..149 score: 11.751628
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 75..155 e-value: 1.2E-16 score: 62.1
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 4..165
None	No IPR available	PANTHER	PTHR22765:SF187	E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED	coord: 4..165
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 87..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026122.1	Sed0026122.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity