Sed0026118 (gene) Chayote v1

Overview


Name	Sed0026118
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Gag/pol protein
Location	LG09: 25820503 .. 25821076 (-)
RNA-Seq Expression	Sed0026118
Synteny	Sed0026118

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACTTGTCAACGATGACAAGAAGTTTGTTCTCATGGAGGAATGTCCTTTGGCACTGGCACCTAATACGACACGAAATGTTCGTGAAGCGCATGATAGTTGGCATAATGCTAACGAAAAGGCAAGAATCTATATCTTGGCAAGTGTCTCGGACATTCTGGCCAAAAAACTAGAGAACATGGTAACTACTTAAGAGATGATGAGAGCCCTTTATGAAATTTTTGGGCAATCATCGTCTCAGTTAAAGCATGATGCTCTCCTAGTCATAATAGACAAAGCTACAGGTAAACTTTGTACTTGAGATGCTACCAAGTAGCTTCTAACAATTTAATAGCAATGTTGTTATGAACAAGATTGTATTTAACCCCACTGCTATTCTTAATGAACTTCAAACCTTCGAGTCCATGATGAAAATCAAAGACAAAGAGGGGGAGGAAAGTGTTGTCACCAAGAATAAGAGTTCTGGAACCACGGGTTTAGGGACCAAGCCTAAAGGTTGGACCTTCAAGGAAAAGTTTGAAAAGAAGAAGAAGATTTGTGGGAGTAAGAATAAGGTAAATCTCATTTACTAG

mRNA sequence

ATGATACTTGTCAACGATGACAAGAAGTTTGTTCTCATGGAGGAATGTCCTTTGGCACTGGCACCTAATACGACACGAAATGTTCGTGAAGCGCATGATAGTTGGCATAATGCTAACGAAAAGGCAAGAATCTATATCTTGGCAAGTGTCTCGGACATTCTGGCCAAAAAACTAGAGAACATGATTGTATTTAACCCCACTGCTATTCTTAATGAACTTCAAACCTTCGAGTCCATGATGAAAATCAAAGACAAAGAGGGGGAGGAAAGTGTTGTCACCAAGAATAAGAGTTCTGGAACCACGGGTTTAGGGACCAAGCCTAAAGGTTGGACCTTCAAGGAAAAGTTTGAAAAGAAGAAGAAGATTTGTGGGAGTAAGAATAAGGTAAATCTCATTTACTAG

Coding sequence (CDS)

ATGATACTTGTCAACGATGACAAGAAGTTTGTTCTCATGGAGGAATGTCCTTTGGCACTGGCACCTAATACGACACGAAATGTTCGTGAAGCGCATGATAGTTGGCATAATGCTAACGAAAAGGCAAGAATCTATATCTTGGCAAGTGTCTCGGACATTCTGGCCAAAAAACTAGAGAACATGATTGTATTTAACCCCACTGCTATTCTTAATGAACTTCAAACCTTCGAGTCCATGATGAAAATCAAAGACAAAGAGGGGGAGGAAAGTGTTGTCACCAAGAATAAGAGTTCTGGAACCACGGGTTTAGGGACCAAGCCTAAAGGTTGGACCTTCAAGGAAAAGTTTGAAAAGAAGAAGAAGATTTGTGGGAGTAAGAATAAGGTAAATCTCATTTACTAG

Protein sequence

MILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENMIVFNPTAILNELQTFESMMKIKDKEGEESVVTKNKSSGTTGLGTKPKGWTFKEKFEKKKKICGSKNKVNLIY

Homology

[Close]

BLAST of Sed0026118 vs. NCBI nr
Match: KAA0055498.1 (gag-pol fusion protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 5.8e-14
Identity = 64/182 (35.16%), Postives = 84/182 (46.15%), Query Frame = 0


Query: 2   ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE-- 61
           +L+ DD +FVL+EECP     N TR +RE ++ W  ANEKAR YIL S+S++LAKK E  
Sbjct: 29  VLIIDDLRFVLVEECPQVPTANATRTIREPYERWAKANEKARAYILTSLSEVLAKKHESI 88

Query: 62  -----------------------------------------------NMIVFNPTAILNE 121
                                                          N I +  T +LNE
Sbjct: 89  LTAREIMDSLQEMFEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNE 148

Query: 122 LQTFESMMKIKDKEGEESVVTKNKS---SGTTGLGTKPKGWTFKEKFEKKKKICGSKNKV 132
           LQTFES+MKIK ++GE +V T  +      T+G  + P     K   + KKK  G  NK 
Sbjct: 149 LQTFESLMKIKGQKGETNVATSTRKFHRRSTSGTKSMPSSSGNK---KWKKKNGGQGNKA 207

[Close]

BLAST of Sed0026118 vs. NCBI nr
Match: XP_022158791.1 (uncharacterized protein LOC111025258 [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-13
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 2  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENM 61
          ILV DD +FVL EECP ALAPN+ + VR+AHD W  ANEKAR+YILAS+SD+L+KK E +
Sbjct: 29 ILVIDDLRFVLTEECPPALAPNSNQTVRDAHDRWFKANEKARVYILASISDVLSKKHEGL 88

[Close]

BLAST of Sed0026118 vs. NCBI nr
Match: XP_038888109.1 (uncharacterized protein LOC120078009 [Benincasa hispida])

HSP 1 Score: 81.3 bits (199), Expect = 7.1e-12
Identity = 58/147 (39.46%), Postives = 83/147 (56.46%), Query Frame = 0


Query: 2   ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE-- 61
           IL+ DD  FVLME+CP   APN T+NV+EA++ W   NEKAR+YILAS+S++LAKK E  
Sbjct: 29  ILIIDDLHFVLMEDCPPIPAPNATQNVQEAYELWTRTNEKARVYILASLSEVLAKKHEPH 88

Query: 62  ----------NMIVFNPTAILNEL-------QTFESMMKIKDKEGEESVVTKNK------ 116
                       +   P+A L  +        TF+S+MK+K ++ E +V + +K      
Sbjct: 89  AHISEIMESLRRMFELPSAQLRHVILKHISNVTFQSLMKLKGQKDEANVASSSKKFHRGS 148

[Close]

BLAST of Sed0026118 vs. NCBI nr
Match: XP_038889092.1 (uncharacterized protein LOC120079003 [Benincasa hispida])

HSP 1 Score: 80.9 bits (198), Expect = 9.3e-12
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  MILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLEN 60
          MILV DD +FVLMEECP +L PN  R VR+ +D W  ANEKA++YILA++SD+L+KK E 
Sbjct: 28 MILVIDDLRFVLMEECPPSLGPNANRTVRDVYDRWVKANEKAQVYILANISDLLSKKHER 87

Query: 61 M 62
          +
Sbjct: 88 L 88

[Close]

BLAST of Sed0026118 vs. NCBI nr
Match: KAA0047411.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14086.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 9.3e-12
Identity = 70/183 (38.25%), Postives = 82/183 (44.81%), Query Frame = 0


Query: 2   ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE-- 61
           ILV DD +F L EE P A A N  RNVRE +D W  ANEKA +YILAS+SD+LAKK E  
Sbjct: 422 ILVVDDLRFALTEERPQASASNANRNVREVYDRWVEANEKACVYILASMSDVLAKKHESL 481

Query: 62  ----------------------------------------------NMIVFNPTAILNEL 121
                                                         N I F  T +LNEL
Sbjct: 482 AMAKEIMDSLREMFVNGGHINEANQVSFILHSFPKSFVPFQTNASLNKIEFTLTTLLNEL 541

Query: 122 QTFESMMKIKDKEGEESVVTKNK-----SSGTTGLGT-----KPKGWTFKEKFEKKKKIC 127
           Q F+++ K K KE E +V T  K     SS  T +GT     K KG T   K  K KK+ 
Sbjct: 542 QRFQNLTKGKGKEVETNVATTEKELVGGSSSKTRVGTLNMKKKRKGKT--PKNSKGKKVA 601

[Close]

BLAST of Sed0026118 vs. ExPASy TrEMBL
Match: A0A5A7UKD1 (Gag-pol fusion protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00770 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-14
Identity = 64/182 (35.16%), Postives = 84/182 (46.15%), Query Frame = 0


Query: 2   ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE-- 61
           +L+ DD +FVL+EECP     N TR +RE ++ W  ANEKAR YIL S+S++LAKK E  
Sbjct: 29  VLIIDDLRFVLVEECPQVPTANATRTIREPYERWAKANEKARAYILTSLSEVLAKKHESI 88

Query: 62  -----------------------------------------------NMIVFNPTAILNE 121
                                                          N I +  T +LNE
Sbjct: 89  LTAREIMDSLQEMFEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNE 148

Query: 122 LQTFESMMKIKDKEGEESVVTKNKS---SGTTGLGTKPKGWTFKEKFEKKKKICGSKNKV 132
           LQTFES+MKIK ++GE +V T  +      T+G  + P     K   + KKK  G  NK 
Sbjct: 149 LQTFESLMKIKGQKGETNVATSTRKFHRRSTSGTKSMPSSSGNK---KWKKKNGGQGNKA 207

[Close]

BLAST of Sed0026118 vs. ExPASy TrEMBL
Match: A0A6J1E205 (uncharacterized protein LOC111025258 OS=Momordica charantia OX=3673 GN=LOC111025258 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 2  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENM 61
          ILV DD +FVL EECP ALAPN+ + VR+AHD W  ANEKAR+YILAS+SD+L+KK E +
Sbjct: 29 ILVIDDLRFVLTEECPPALAPNSNQTVRDAHDRWFKANEKARVYILASISDVLSKKHEGL 88

[Close]

BLAST of Sed0026118 vs. ExPASy TrEMBL
Match: A0A5D3CUK8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00690 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.5e-12
Identity = 70/183 (38.25%), Postives = 82/183 (44.81%), Query Frame = 0


Query: 2   ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE-- 61
           ILV DD +F L EE P A A N  RNVRE +D W  ANEKA +YILAS+SD+LAKK E  
Sbjct: 422 ILVVDDLRFALTEERPQASASNANRNVREVYDRWVEANEKACVYILASMSDVLAKKHESL 481

Query: 62  ----------------------------------------------NMIVFNPTAILNEL 121
                                                         N I F  T +LNEL
Sbjct: 482 AMAKEIMDSLREMFVNGGHINEANQVSFILHSFPKSFVPFQTNASLNKIEFTLTTLLNEL 541

Query: 122 QTFESMMKIKDKEGEESVVTKNK-----SSGTTGLGT-----KPKGWTFKEKFEKKKKIC 127
           Q F+++ K K KE E +V T  K     SS  T +GT     K KG T   K  K KK+ 
Sbjct: 542 QRFQNLTKGKGKEVETNVATTEKELVGGSSSKTRVGTLNMKKKRKGKT--PKNSKGKKVA 601

[Close]

BLAST of Sed0026118 vs. ExPASy TrEMBL
Match: A0A5A7T706 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G00760 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.2e-11
Identity = 64/192 (33.33%), Postives = 84/192 (43.75%), Query Frame = 0


Query: 9   KFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENM------- 68
           +FVL+EECP   A N TR VREA++ W  ANEKAR YILAS+S++LAKK E+M       
Sbjct: 2   RFVLVEECPQVSAANATRTVREAYERWAKANEKARAYILASLSEVLAKKHESMLTAREIM 61

Query: 69  -----------------------------------------------------------I 128
                                                                      I
Sbjct: 62  DSLQEMFGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEAVIDEASQI 121

Query: 129 VFNPTAILNELQTFESMMKIKDKEGEESVVTKNKS---SGTTGLGTKPKGWTFKEKFEKK 132
            +  T +LNELQTFES+MKIK ++GE +V T  +       +G    P   +  +K++KK
Sbjct: 122 AYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSNSGNKFMPSS-SGNKKWKKK 181

[Close]

BLAST of Sed0026118 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.8e-11
Identity = 70/221 (31.67%), Postives = 89/221 (40.27%), Query Frame = 0


Query: 2   ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENM 61
           +L+ DD +FVL+EECP   A N TR VRE ++ W  ANEKAR YILAS+S++LAKK E+M
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  ------------------------------------------------------------ 121
                                                                       
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 -----------------------------IVFNPTAILNELQTFESMMKIKDKEGEESVV 132
                                        I +  T +LNELQTFES+MKIK ++GE +V 
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVA 208

The following BLAST results are available for this feature:

BLAST of Sed0026118 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055498.1	5.8e-14	35.16	gag-pol fusion protein [Cucumis melo var. makuwa]	[more]
XP_022158791.1	2.2e-13	66.67	uncharacterized protein LOC111025258 [Momordica charantia]	[more]
XP_038888109.1	7.1e-12	39.46	uncharacterized protein LOC120078009 [Benincasa hispida]	[more]
XP_038889092.1	9.3e-12	60.66	uncharacterized protein LOC120079003 [Benincasa hispida]	[more]
KAA0047411.1	9.3e-12	38.25	gag/pol protein [Cucumis melo var. makuwa] >TYK14086.1 gag/pol protein [Cucumis ...	[more]

BLAST of Sed0026118 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0026118 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKD1	2.8e-14	35.16	Gag-pol fusion protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2...	[more]
A0A6J1E205	1.1e-13	66.67	uncharacterized protein LOC111025258 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5D3CUK8	4.5e-12	38.25	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G0069...	[more]
A0A5A7T706	2.2e-11	33.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G0076...	[more]
A0A5A7SMH8	3.8e-11	31.67	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]

BLAST of Sed0026118 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026118.1	Sed0026118.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding