Sed0026112 (gene) Chayote v1

Overview


Name	Sed0026112
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Carbamoyl-phosphate synthase small chain
Location	LG07: 35300494 .. 35303517 (-)
RNA-Seq Expression	Sed0026112
Synteny	Sed0026112

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCAGAGTTATGGACTTGGTGTCCGGAGCCGCTCTCAATTGTTTCCATTTCAAAAACCCCAACATAGGATTTGTCAAATCTAGGGATTTCACTGTCAGATGCTCTGTTCCACTCTCTTCCAATGCCTCTGCCACCATTGGTACTCTGTGGATTTCCCTTCTTCTGCTTGTTTACTTTTTCCAATCACTGTTTCATCTTTGAATGGCTATGATTTTGTTGGGTTGTTTTTAGATTTGGGAGAGCGGCCATGGAAGGTGTCGGATGCTCGTTTGGTGCTTGAAGATGGATCAATCTGGAGGGCCAAGTCTTTTGGCGCTTCCGGAACCCAAGTTGGTGAAGTGGTTTTCAATACTTCTTTGACTGGGTAAGTCTTTTGGAAATTACACTGTTCTGTTTACTTATTTTTAAATAGATTTGATTTTCCTTTGGATTTTTCCAACTAACTGGTTGATTGATAGGTTCACAACTGCTCGAATAAAGTAAATACTAATCTAACTAATAACACAATTAACATGCAATGTTTCAAGCATTGAACAGATTAATACACAAGTATACACAATCATTTGAAGTCAAGTGATAAGTTTACAAGTTATTCTCCACATGGACTGGTTTAACTCTAAATAAATGTTAAATGAAAAGTAAAGTGCAGAAAATTAAAGGAAATGCTGGTGGTTGATTATACTAACTAATTGACTAAAAACTATATAACTACGGTAATGAAACGAATGTTGTAAACACTAGAAAAATAAACAGTAACACATGCAATGCTCGAAGCTTCACAGAATCGAATAGCAAACTGTCATAATGCTATAAATGTTCAATATGAAGATAACAGCAAGAATGCAGAAAATGGAAGAAATACTTCAATAAGAGAATAGGTTAGGGTAAAGGGTTTTTTTGGGTGCGGTTAACATGCATCAATGGTAAGTTTATGGTGAGAAACGAACTCCACATAACACATGATCAAATGTTCCCTTCTGGGATCCATTCATTCTCAACAAATATGAGCTTTCACATCAAGGTTTGAAACTATAAACAATGAATTGTTCACTAGCGAGGTGAACTATTCCTAGACTCCCTCTTAACATGAAACTAATGGTCATTAGTAGTAGTTCTCTAATCCCCCTCTCTTCCGAGATGAAGTGAAAAGCAAACATGAATGGATGATCAGTCAAAACATGCTTTTAGTTAAAATGACTTCTATGACTTAGTTCAACATCCCCCACTTATCCAAGATACATGCAACTCACACCTTTTCCTTAGCATCCACCTATATGCGCTTAGCTCATGCTCATCGTGGAAAGAACAGAAATAGAGTATAATGCCGAGAGCATTTCATAGCAAATAAAACAATAAAAGGAAAACTACCACAAGGTATGTATTAAGCAACGAAATCAAGTCTTACAAAAATAAAGCTATTGGAAATGAAAATAAAGAGAAAAGAGAAGAAAAAAGCTTAAGAAAGTCTTCAAAGAGTGCCAAAGTGGTCTCCAATGGTGCTCCTCCAAGCTCCTTGCAAGAACCCACTATGTATTACAATAAAATTACTAGAAAGCAAGGAAAACAAGGAAAGAAAAAATAAGTTTGGAAAAATGGCTCTTAAAATGTGGTGGCTCTCCAAAAAGGCCACATTTCTCTTTTTCCCAAAAGGATGCTCTTATACTCCAACTTCATCCAAGATCAACGGTTGAGATTCTAGGAAAAATGCTTTGATTTTCCACTCAAAAAGTGGTTAGAAAAGACATCTTCCCAGGGGACAAACATGTTTGCCGCTTCTGCACCGTCTGACATCTGCATAAGAACTCTGTTTTTTGAAGAAGAACTGTTATTCCCAATCGGGTGAATGCTGCAGACATCTTGTAACTGGAATTTTCCGATGCTCTAGACATTGCTACGCTTCAACTCTGGATTTTATTTTCTGGAGCTTTCCTCCTCTAATTTAGTCTTTATTCAAAGCTTCCAGCATCTTAAAATCCTAAAATGATAAAAGAAAAAAAAAACACTTAGCGAGAACGAGGATTCTAAAATGCGATATAAAAGCTTCAAACATTCACTTTTTTTGTCACCCAAACTCTTCATTATCCTAATTTTCTAATCCTTGCATCTTATCCTACATGCATTGCATTTTTAGTATAGTTCTCTATTCTAAGGTGATTCTATGCATAAAAAAAAAGATAATAGTGCATGATTCTTCGTTGAGAACACCCTAATGGAGGACTAAATAACTCTCTAATTGAGAGTTCTCATTGATTATTTATGAAAATATTGCAGCATCCCACAAAAATGGTAAAGAGTAATCCGCTGCGGCATGCTCGTGCAAGTGAACGATTGAAGGCTGCTTGAATCACACCAGGTTCAAAGCAGCACAAGGTTCCCTTGATCGAATTGGTAAGCCCCATGATATTAACCCTCTTCGTGCAATATTAAATTATATCTAGCCTTAAGTCATATGCTACTAATTGTAGTACGTAGAGTGCTGACAAGAATACAGAGGAGTCTGTGACTAACGACTCCCCAAGCATGGCAAAGGTGCAAAAACAAGCTAGAGATGATGCAGTTGGGAGTGGGCAAGGTGCTTTGAAACAGACAGCTAAGAAATGGAAGAAAGATGAGGAGGAAAAAACAGAGGTACAATTGTTTTAGCTCGAGTAGTTAGTGATCGATATAATGCACCGATAATATAATGTATTGAATAATCGAGAAACTGACCATGCAATATGTTATGAATTGTGCAATTGAAAAGTGAAACAGACCAACCGCTCAAGGACGCGGAGAGCAGCAATAATGACGTGGTTGAACTGCCTCCATTTGGGAGTGAGGAAACTCAAGGCACCAAACCATCCCAAAGGAAACTTGCTCATGAACCGAAAACGGTTAAGGTACCACCATACAACTCAAAAAATGCACGTCCTTTCTATTTCGTTTGCTATTTAAACATACTTACATGGTTTTATATTGTAGGATAAAGTCGACTTAAGAGGGAAGAAGTCCTTAAACGCTGCACCAAGAAAGAAATAG

mRNA sequence

ATGGCGACCAGAGTTATGGACTTGGTGTCCGGAGCCGCTCTCAATTGTTTCCATTTCAAAAACCCCAACATAGGATTTGTCAAATCTAGGGATTTCACTGTCAGATGCTCTGTTCCACTCTCTTCCAATGCCTCTGCCACCATTGATTTGGGAGAGCGGCCATGGAAGGTGTCGGATGCTCGTTTGGTGCTTGAAGATGGATCAATCTGGAGGGCCAAGTCTTTTGGCGCTTCCGGAACCCAAGTTGGTGAAGTGGTTTTCAATACTTCTTTGACTGGTGAAACAGACCAACCGCTCAAGGACGCGGAGAGCAGCAATAATGACGTGGTTGAACTGCCTCCATTTGGGAGTGAGGAAACTCAAGGCACCAAACCATCCCAAAGGAAACTTGCTCATGAACCGAAAACGGTTAAGGATAAAGTCGACTTAAGAGGGAAGAAGTCCTTAAACGCTGCACCAAGAAAGAAATAG

Coding sequence (CDS)

ATGGCGACCAGAGTTATGGACTTGGTGTCCGGAGCCGCTCTCAATTGTTTCCATTTCAAAAACCCCAACATAGGATTTGTCAAATCTAGGGATTTCACTGTCAGATGCTCTGTTCCACTCTCTTCCAATGCCTCTGCCACCATTGATTTGGGAGAGCGGCCATGGAAGGTGTCGGATGCTCGTTTGGTGCTTGAAGATGGATCAATCTGGAGGGCCAAGTCTTTTGGCGCTTCCGGAACCCAAGTTGGTGAAGTGGTTTTCAATACTTCTTTGACTGGTGAAACAGACCAACCGCTCAAGGACGCGGAGAGCAGCAATAATGACGTGGTTGAACTGCCTCCATTTGGGAGTGAGGAAACTCAAGGCACCAAACCATCCCAAAGGAAACTTGCTCATGAACCGAAAACGGTTAAGGATAAAGTCGACTTAAGAGGGAAGAAGTCCTTAAACGCTGCACCAAGAAAGAAATAG

Protein sequence

MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGETDQPLKDAESSNNDVVELPPFGSEETQGTKPSQRKLAHEPKTVKDKVDLRGKKSLNAAPRKK

Homology

[Close]

BLAST of Sed0026112 vs. NCBI nr
Match: XP_023532073.1 (LOW QUALITY PROTEIN: carbamoyl-phosphate synthase small chain, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 2.8e-39
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDA 60
          MA RVMDLVSGA+LNCFHFKN N GFVKSRDFT+RCSVPLSS+ +ATIDLGERPWKVSDA
Sbjct: 1  MAIRVMDLVSGASLNCFHFKN-NKGFVKSRDFTIRCSVPLSSHGAATIDLGERPWKVSDA 60

Query: 61 RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Sbjct: 61 RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 92

[Close]

BLAST of Sed0026112 vs. NCBI nr
Match: KAG7035263.1 (Carbamoyl-phosphate synthase small chain, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.6 bits (436), Expect = 2.8e-39
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDA 60
          MA RVMDLVSGA+LNCFHFKN N GFVKSRDFT+RCSVPLSS+ +ATIDLGERPWKVSDA
Sbjct: 1  MAIRVMDLVSGASLNCFHFKN-NKGFVKSRDFTIRCSVPLSSHGAATIDLGERPWKVSDA 60

Query: 61 RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Sbjct: 61 RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 92

[Close]

BLAST of Sed0026112 vs. NCBI nr
Match: XP_022947190.1 (carbamoyl-phosphate synthase small chain, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 172.6 bits (436), Expect = 2.8e-39
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDA 60
          MA RVMDLVSGA+LNCFHFKN N GFVKSRDFT+RCSVPLSS+ +ATIDLGERPWKVSDA
Sbjct: 1  MAIRVMDLVSGASLNCFHFKN-NKGFVKSRDFTIRCSVPLSSHGAATIDLGERPWKVSDA 60

Query: 61 RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Sbjct: 61 RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 92

[Close]

BLAST of Sed0026112 vs. NCBI nr
Match: XP_023007174.1 (carbamoyl-phosphate synthase small chain, chloroplastic-like [Cucurbita maxima] >XP_023007175.1 carbamoyl-phosphate synthase small chain, chloroplastic-like [Cucurbita maxima] >XP_023007176.1 carbamoyl-phosphate synthase small chain, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 169.1 bits (427), Expect = 3.0e-38
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDA 60
          MA RVMDLVSGA+LNCFHFKN N GF KSRDFT+RCSVPL S+ +ATIDLGERPWKVSDA
Sbjct: 1  MAIRVMDLVSGASLNCFHFKN-NKGFAKSRDFTIRCSVPLPSHGAATIDLGERPWKVSDA 60

Query: 61 RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Sbjct: 61 RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 92

[Close]

BLAST of Sed0026112 vs. NCBI nr
Match: XP_038893406.1 (carbamoyl-phosphate synthase small chain, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 162.5 bits (410), Expect = 2.9e-36
Identity = 81/94 (86.17%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSS-NASATIDLGERPWKVSD 60
          MA RVMDLVSGA+ NCFHFKN   G+VKSRDF++RCSVPLSS + +ATIDLGERPWKVSD
Sbjct: 1  MAIRVMDLVSGASFNCFHFKNAK-GYVKSRDFSIRCSVPLSSTHGAATIDLGERPWKVSD 60

Query: 61 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Sbjct: 61 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 93

[Close]

BLAST of Sed0026112 vs. ExPASy Swiss-Prot
Match: Q6YV23 (Carbamoyl-phosphate synthase small chain, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CARA PE=2 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-16
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 34  VRCSVPLSSNASATI--DLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSL 93
           VR +  +S   S T+  D  +RPWK+SDARLVLEDGS+W+AKSFGASGTQVGEVVFNTSL
Sbjct: 49  VRAAKAVSGVQSGTVVDDGVQRPWKLSDARLVLEDGSVWKAKSFGASGTQVGEVVFNTSL 108

[Close]

BLAST of Sed0026112 vs. ExPASy Swiss-Prot
Match: Q9LVW7 (Carbamoyl-phosphate synthase small chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CARA PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-13
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 1  MATRVMDLVSGAALNCF-HFKNPNIGFVKSRDFTVRCSV-PLSSNASATIDLGERPWKVS 60
          MATR +  V   +L+    F     GF   R   +RCS  PL+   S  +   E+PW   
Sbjct: 3  MATRTLGFVLPTSLSSQPSFDRRGGGF---RVSVIRCSTSPLTFPTSGVV---EKPWTSY 62

Query: 61 DARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          +ARLVLEDGSIW AKSFGA GT++ E+VFNTSLTG
Sbjct: 63 NARLVLEDGSIWPAKSFGAPGTRIAELVFNTSLTG 91

[Close]

BLAST of Sed0026112 vs. ExPASy Swiss-Prot
Match: C5BQ30 (Carbamoyl-phosphate synthase small chain OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) OX=377629 GN=carA PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-05
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 60 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          A LVLEDGS++R  S GA+G  VGEVVFNTS+TG
Sbjct: 13 AILVLEDGSVFRGVSIGATGKSVGEVVFNTSITG 46

[Close]

BLAST of Sed0026112 vs. ExPASy Swiss-Prot
Match: Q8DKU5 (Carbamoyl-phosphate synthase small chain OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=carA PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.6e-05
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 60 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          A LVL DGS++R  SFGA GT +GEVVFNT +TG
Sbjct: 5  ALLVLADGSVFRGFSFGAPGTAIGEVVFNTGMTG 38

[Close]

BLAST of Sed0026112 vs. ExPASy Swiss-Prot
Match: Q8K9Z6 (Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=carA PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-04
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 60 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          A LVLEDG+ +  +S GA GT VGEVVFNTS+TG
Sbjct: 9  AVLVLEDGTRFHGRSIGAKGTTVGEVVFNTSITG 42

[Close]

BLAST of Sed0026112 vs. ExPASy TrEMBL
Match: A0A6J1G657 (carbamoyl-phosphate synthase small chain, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111451135 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.3e-39
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDA 60
          MA RVMDLVSGA+LNCFHFKN N GFVKSRDFT+RCSVPLSS+ +ATIDLGERPWKVSDA
Sbjct: 1  MAIRVMDLVSGASLNCFHFKN-NKGFVKSRDFTIRCSVPLSSHGAATIDLGERPWKVSDA 60

Query: 61 RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Sbjct: 61 RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 92

[Close]

BLAST of Sed0026112 vs. ExPASy TrEMBL
Match: A0A6J1L483 (carbamoyl-phosphate synthase small chain, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111499747 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.5e-38
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDA 60
          MA RVMDLVSGA+LNCFHFKN N GF KSRDFT+RCSVPL S+ +ATIDLGERPWKVSDA
Sbjct: 1  MAIRVMDLVSGASLNCFHFKN-NKGFAKSRDFTIRCSVPLPSHGAATIDLGERPWKVSDA 60

Query: 61 RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Sbjct: 61 RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 92

[Close]

BLAST of Sed0026112 vs. ExPASy TrEMBL
Match: A0A6J1H064 (carbamoyl-phosphate synthase small chain, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111458831 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.4e-36
Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPL-SSNASATIDLGERPWKVSD 60
          MA RVMDLVSG +LNCFHFKNP  G  KSRDF++RCSVPL SS+ +ATIDLGERPWKVSD
Sbjct: 1  MAIRVMDLVSGVSLNCFHFKNPK-GHQKSRDFSIRCSVPLSSSHGAATIDLGERPWKVSD 60

Query: 61 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Sbjct: 61 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 93

[Close]

BLAST of Sed0026112 vs. ExPASy TrEMBL
Match: A0A5D3CV98 (Carbamoyl-phosphate synthase small chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002870 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.1e-36
Identity = 80/94 (85.11%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSN-ASATIDLGERPWKVSD 60
          MA RVMDLVSGA+LNCFHFKNP  G VKSR F++RCSVPLSS+  +ATIDLGERPWKVSD
Sbjct: 1  MAIRVMDLVSGASLNCFHFKNPK-GCVKSRSFSIRCSVPLSSSQGAATIDLGERPWKVSD 60

Query: 61 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          ARLVLEDGS+W+AKSFGASGTQVGEVVFNTSLTG
Sbjct: 61 ARLVLEDGSVWKAKSFGASGTQVGEVVFNTSLTG 93

[Close]

BLAST of Sed0026112 vs. ExPASy TrEMBL
Match: A0A0A0KV57 (Glutamine amidotransferase type-1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G585380 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.1e-36
Identity = 81/94 (86.17%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSN-ASATIDLGERPWKVSD 60
          MA RVMDLVSGA+LNCFHFKNP  G VKSR F++RCSVPLSS+  +ATIDLGERPWKVSD
Sbjct: 1  MAIRVMDLVSGASLNCFHFKNPK-GCVKSRGFSIRCSVPLSSSQGAATIDLGERPWKVSD 60

Query: 61 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          ARLVLEDGSIW+AKSFGASGTQVGEVVFNTSLTG
Sbjct: 61 ARLVLEDGSIWKAKSFGASGTQVGEVVFNTSLTG 93

[Close]

BLAST of Sed0026112 vs. TAIR 10
Match: AT3G27740.1 (carbamoyl phosphate synthetase A )

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-14
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 1  MATRVMDLVSGAALNCF-HFKNPNIGFVKSRDFTVRCSV-PLSSNASATIDLGERPWKVS 60
          MATR +  V   +L+    F     GF   R   +RCS  PL+   S  +   E+PW   
Sbjct: 3  MATRTLGFVLPTSLSSQPSFDRRGGGF---RVSVIRCSTSPLTFPTSGVV---EKPWTSY 62

Query: 61 DARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          +ARLVLEDGSIW AKSFGA GT++ E+VFNTSLTG
Sbjct: 63 NARLVLEDGSIWPAKSFGAPGTRIAELVFNTSLTG 91

[Close]

BLAST of Sed0026112 vs. TAIR 10
Match: AT3G27740.2 (carbamoyl phosphate synthetase A )

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-14
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 1  MATRVMDLVSGAALNCF-HFKNPNIGFVKSRDFTVRCSV-PLSSNASATIDLGERPWKVS 60
          MATR +  V   +L+    F     GF   R   +RCS  PL+   S  +   E+PW   
Sbjct: 3  MATRTLGFVLPTSLSSQPSFDRRGGGF---RVSVIRCSTSPLTFPTSGVV---EKPWTSY 62

Query: 61 DARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG 94
          +ARLVLEDGSIW AKSFGA GT++ E+VFNTSLTG
Sbjct: 63 NARLVLEDGSIWPAKSFGAPGTRIAELVFNTSLTG 91

The following BLAST results are available for this feature:

BLAST of Sed0026112 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532073.1	2.8e-39	91.40	LOW QUALITY PROTEIN: carbamoyl-phosphate synthase small chain, chloroplastic-lik...	[more]
KAG7035263.1	2.8e-39	91.40	Carbamoyl-phosphate synthase small chain, chloroplastic [Cucurbita argyrosperma ...	[more]
XP_022947190.1	2.8e-39	91.40	carbamoyl-phosphate synthase small chain, chloroplastic-like [Cucurbita moschata...	[more]
XP_023007174.1	3.0e-38	89.25	carbamoyl-phosphate synthase small chain, chloroplastic-like [Cucurbita maxima] ...	[more]
XP_038893406.1	2.9e-36	86.17	carbamoyl-phosphate synthase small chain, chloroplastic isoform X2 [Benincasa hi...	[more]

BLAST of Sed0026112 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6YV23	1.5e-16	70.97	Carbamoyl-phosphate synthase small chain, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q9LVW7	3.5e-13	49.47	Carbamoyl-phosphate synthase small chain, chloroplastic OS=Arabidopsis thaliana ...	[more]
C5BQ30	2.7e-05	70.59	Carbamoyl-phosphate synthase small chain OS=Teredinibacter turnerae (strain ATCC...	[more]
Q8DKU5	4.6e-05	67.65	Carbamoyl-phosphate synthase small chain OS=Thermosynechococcus elongatus (strai...	[more]
Q8K9Z6	1.3e-04	67.65	Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola subsp. Schizaphi...	[more]

BLAST of Sed0026112 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G657	1.3e-39	91.40	carbamoyl-phosphate synthase small chain, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A6J1L483	1.5e-38	89.25	carbamoyl-phosphate synthase small chain, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A6J1H064	2.4e-36	86.17	carbamoyl-phosphate synthase small chain, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A5D3CV98	3.1e-36	85.11	Carbamoyl-phosphate synthase small chain OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0KV57	3.1e-36	86.17	Glutamine amidotransferase type-1 domain-containing protein OS=Cucumis sativus O...	[more]

BLAST of Sed0026112 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27740.1	2.5e-14	49.47	carbamoyl phosphate synthetase A	[more]
AT3G27740.2	2.5e-14	49.47	carbamoyl phosphate synthetase A	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002474	Carbamoyl-phosphate synthase small subunit, N-terminal domain	SMART	SM01097	CPSase_sm_chain_2	coord: 58..154 e-value: 2.1E-4 score: -37.6
IPR002474	Carbamoyl-phosphate synthase small subunit, N-terminal domain	PFAM	PF00988	CPSase_sm_chain	coord: 60..93 e-value: 1.2E-7 score: 31.6
IPR036480	Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily	GENE3D	3.50.30.20		coord: 57..122 e-value: 2.1E-9 score: 38.8
IPR036480	Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily	SUPERFAMILY	52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain	coord: 59..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..149
None	No IPR available	PANTHER	PTHR11405	CARBAMOYLTRANSFERASE FAMILY MEMBER	coord: 29..94
None	No IPR available	PANTHER	PTHR11405:SF4	CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN	coord: 29..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026112.1	Sed0026112.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006526	arginine biosynthetic process
biological_process	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process
biological_process	GO:0006541	glutamine metabolic process
cellular_component	GO:0005951	carbamoyl-phosphate synthase complex
molecular_function	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity