Sed0026074 (gene) Chayote v1

Overview


Name	Sed0026074
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CCHC-type domain-containing protein
Location	LG09: 34124637 .. 34126700 (+)
RNA-Seq Expression	Sed0026074
Synteny	Sed0026074

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGAATGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGATTACACCAGGCTTTGAAAGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCGTGATGGTGGTTCAATAGAGTCTAGTGGTGGTTCTAGCAAAGGTTCTAAGAAGTCTATCAAGCGTGATGGTGTATCAGGCAAAGAGAATTCAAATCGGTTGTACCTGAAGGAGCAATTTTAAACATTGCGAATGAAAGAAGGTACGAAAATATAAGATCATCTGAGTGTTCTCAATGGTGTTGTCTCTGAGATGGAGGCATTGATGTGAAGATAGAGGACGATGATAAGGCACTAAGGCTTATCTTGTCACTTCCCTCTTCTTATGAACATATGAAGCCAATCTTGATGTACAGAAAAGAGTCTTTAAATTTTGTAGAGGCTACTAGTAAACTTCTATCGGATGAAAGAAGACTGAAGTTTGATGAGCGTACTTCACAAGAGGATTCAGCACTGGTAGTTGGCATTGGAAGAAAAAGAGTAACTTTGTGCAAAAGAGAAGTTGTTGGGAATGTGGACAACCTGGTTACATGAGAAGCAATTGTCCTAACAGACCAAGTTCGTCAAAGGGTTCTGGATTGGATGCTGACGTGGTCTTTCTCGTCCGGGGATCTGGTAATGCCTTCTGAAGAAAGAAAGAAATCATCCTCATGGTATGTTCGCTTTGCCATGGTAGAGGATGTGATGTCAGCGGTTCCACAAGTTTGCACACGGGCATTGGCTTGGCGGTTATGCAAGGTGTGTGGTGGAAGTTATGTCGATGGCTGAAGAACTTCCAGGTAAGCCAAATAGGTGGAAGTTGCACCATAAAGTTCAGCAAGGTGTATCGACATGTGATGAAGAAACAAAATCTTGGAATGTGAGATTTCAAGTGCTATACTTTTTTATGGTGGAGTATGTTATATTTCCTAGGGTTGAGAATGATGATTGTCAGAGAAGACAATGTTGTAGGAGAAGATGTAGATTCTTCAAATATCTTCCCAAGGTGGAATTTGTTGTGATTTTGGCAAAATAGTATAAGTGAGTTTGTCGCACATCGAAAAGATGCAAGGTAGTGGTGTGCTCCAAGCACTATAAAAGGAGCATCAGACTTTGGTTTCAAAGCATCCCAGTCAAAAGCACTTTAAGCTTAGTGTATTGACTCTTGTTAAATTCCTTTTGTATTCTCTTGTGGAGAATGGGCAAAGGGTGTGAGTAGTATAAGTTTTGAGGGAGTGCGTTTGTAATTGGGGTCGGGGAGAGAATTCTATGTGTTGTAGCAATTTTTCACATAGTGGAAGTTCTTTCTGTCTGTGGTTTTTTTCTCCAATTTGGAGTTTTTCCACGTAAATTCTTGTGTCCTCTATTTTGTTGTTCATTTTAATTTCTCATTATTTTTGTTTATTTATGTTGTTATTAGGGAATGTTTTTCCCAACAAGTGGTATCAGAGCTTTAGGTTTGTAGTTTCTTGAATTTCGAAGTATACTTTGTGGTTGCTGCTTTGTCTGAGCTTCCACATCAGAAAAGTATTCTTGAAACAAGTTAAAATTGGGTGTTTCATTATTTGCAGATTTGCTAGGATTGAAGTAGAAATGGCAAGCTTTATGAGTTTAGTGAAGTTTGATGTGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGTTGATTCAATCTGGATTACACAAGGATTTGAAGGGAAAACCAAGTGGTGGTGATTCTGAAAAATCAAGCGTGATGGTGGTTCAACAGAGTCTAGTGGTGGTTATAGCAAAGGTTCTAAGAAGTCCAACATGAGTGATGACGAATGGGAGGAAATGGATTTGAGAGCTGCAAGTGCCATCAGATTAAATTTGGCTAAAAATGTTCTTACGAATGTGCATGGAATATCAACAGCCAAAGAGCTTTGGGAGAAGCTTGAAGCGATGTATCAGGCAAAGGGAATTCAAATCGGTTGTACCTGA

mRNA sequence

ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGAATGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGATTACACCAGGCTTTGAAAGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCCGTGATGGTGGTTCAACAGAGTCTAGTGGTGGTTATAGCAAAGGTTCTAAGAAGTCCAACATGAGTGATGACGAATGGGAGGAAATGGATTTGAGAGCTGCAAGTGCCATCAGATTAAATTTGGCTAAAAATGTTCTTACGAATGTGCATGGAATATCAACAGCCAAAGAGCTTTGGGAGAAGCTTGAAGCGATGTATCAGGCAAAGGGAATTCAAATCGGTTGTACCTGA

Coding sequence (CDS)

ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGAATGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGATTACACCAGGCTTTGAAAGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCCGTGATGGTGGTTCAACAGAGTCTAGTGGTGGTTATAGCAAAGGTTCTAAGAAGTCCAACATGAGTGATGACGAATGGGAGGAAATGGATTTGAGAGCTGCAAGTGCCATCAGATTAAATTTGGCTAAAAATGTTCTTACGAATGTGCATGGAATATCAACAGCCAAAGAGCTTTGGGAGAAGCTTGAAGCGATGTATCAGGCAAAGGGAATTCAAATCGGTTGTACCTGA

Protein sequence

MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGISTAKELWEKLEAMYQAKGIQIGCT

Homology

[Close]

BLAST of Sed0026074 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 189.1 bits (479), Expect = 2.4e-44
Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGST 60
           M+ FMS VK DVEKFDGM+NFGLWQVQVKDVLIQS LH+ALKGRPS G SEK S DGG  
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGISTAKELWEKLEAMY 120
           ESSGG S+GSKKS+MS ++WEEMDLRAASAIR +LAKN+L NVH ISTAKELWEKLEA+Y
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414

Query: 121 QAKGI 126
           QAKGI
Sbjct: 415 QAKGI 419

[Close]

BLAST of Sed0026074 vs. NCBI nr
Match: KAF7802225.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 156.0 bits (393), Expect = 2.2e-34
Identity = 83/125 (66.40%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 1   MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGST 60
           M+ F S+VKFDVEKFDG +NFGLWQVQVKDVLIQSGLH+AL+G+ S  DSEKS       
Sbjct: 1   MSKFSSAVKFDVEKFDGRINFGLWQVQVKDVLIQSGLHKALEGKVSSKDSEKS------- 60

Query: 61  ESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGISTAKELWEKLEAMY 120
                      +S+MSD +WEE+DLRAAS IRL+LAKNVL NV GISTAKELW+KLE +Y
Sbjct: 61  -----------ESSMSDGDWEELDLRAASTIRLSLAKNVLANVQGISTAKELWKKLEGLY 107

Query: 121 QAKGI 126
           QAKGI
Sbjct: 121 QAKGI 107

[Close]

BLAST of Sed0026074 vs. NCBI nr
Match: KAF7810708.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 147.9 bits (372), Expect = 6.1e-32
Identity = 80/125 (64.00%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 1   MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGST 60
           M+ F S++KFDVEKFDG +NFG WQVQVKDVLIQSGL +AL+G+ S  DSEKS       
Sbjct: 49  MSKFSSAMKFDVEKFDGRINFGWWQVQVKDVLIQSGLQKALEGKVSSKDSEKS------- 108

Query: 61  ESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGISTAKELWEKLEAMY 120
                      +S+MSD +WEE+DLRAAS IRL LAKNVL NV GISTAKELW+KLE +Y
Sbjct: 109 -----------ESSMSDGDWEELDLRAASTIRLCLAKNVLANVQGISTAKELWKKLEGLY 155

Query: 121 QAKGI 126
           QAKGI
Sbjct: 169 QAKGI 155

[Close]

BLAST of Sed0026074 vs. NCBI nr
Match: KAF3622233.1 (hypothetical protein FXO38_31400 [Capsicum annuum] >KAF3630407.1 hypothetical protein FXO37_28487 [Capsicum annuum])

HSP 1 Score: 145.6 bits (366), Expect = 3.0e-31
Identity = 77/121 (63.64%), Postives = 95/121 (78.51%), Query Frame = 0


Query: 5   MSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSG 64
           +   KF++EKFDG +NFG+WQVQVKDVLIQSGLH+ALK RP+   SEK ++D   +ES  
Sbjct: 69  LEGTKFEIEKFDGRINFGVWQVQVKDVLIQSGLHKALKERPT---SEKGNKDSEKSES-- 128

Query: 65  GYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGISTAKELWEKLEAMYQAKG 124
             SK S+KS +SD+EWEE+D++AAS IRL LAKNVL NV G+ST KELWEKLE +YQ K 
Sbjct: 129 --SKDSEKSKISDEEWEELDMKAASQIRLYLAKNVLANVIGLSTTKELWEKLEELYQTKS 182

Query: 125 I 126
           I
Sbjct: 189 I 182

[Close]

BLAST of Sed0026074 vs. NCBI nr
Match: KAF5463231.1 (hypothetical protein F2P56_019161 [Juglans regia])

HSP 1 Score: 144.4 bits (363), Expect = 6.7e-31
Identity = 75/120 (62.50%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 6   SSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGG 65
           +S++++VEKFDG +NFGLWQVQVKDVLIQSGLH+ALKGRP    + + S D   T+ +  
Sbjct: 8   NSIRYEVEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRP----TPEVSSDTSVTDQT-- 67

Query: 66  YSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGISTAKELWEKLEAMYQAKGI 125
                 +S MSD++WE++DLRAASAIRL LAKNVL N+HGISTAK+LWEKLE +YQ KG+
Sbjct: 68  ----KSRSVMSDEDWEDLDLRAASAIRLCLAKNVLANIHGISTAKKLWEKLEELYQTKGV 117

[Close]

BLAST of Sed0026074 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.5e-13
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 5   MSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSG 64
           MS VK++V KF+G   F  WQ +++D+LIQ GLH+ L                       
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLD---------------------- 60

Query: 65  GYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGISTAKELWEKLEAMYQAK 124
                 K   M  ++W ++D RAASAIRL+L+ +V+ N+    TA+ +W +LE++Y +K
Sbjct: 61  --VDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSK 95

[Close]

BLAST of Sed0026074 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.1e-44
Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGST 60
           M+ FMS VK DVEKFDGM+NFGLWQVQVKDVLIQS LH+ALKGRPS G SEK S DGG  
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGISTAKELWEKLEAMY 120
           ESSGG S+GSKKS+MS ++WEEMDLRAASAIR +LAKN+L NVH ISTAKELWEKLEA+Y
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414

Query: 121 QAKGI 126
           QAKGI
Sbjct: 415 QAKGI 419

[Close]

BLAST of Sed0026074 vs. ExPASy TrEMBL
Match: A0A2G2YJH4 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_25006 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.0e-29
Identity = 73/122 (59.84%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 4   FMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESS 63
           +M   KF++EKFDG +NFGLWQVQVKDVLIQSGLH+ALK RP+ G  +K S+   S+E  
Sbjct: 245 YMMGTKFEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKERPTSGKGDKDSKKFESSED- 304

Query: 64  GGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGISTAKELWEKLEAMYQAK 123
                 S+KS +SD+EWEE+D++  S IRL LAK VLTNV G+ST K+LWEKLE +YQ K
Sbjct: 305 ------SEKSRISDEEWEELDMKVESQIRLCLAKYVLTNVIGLSTTKKLWEKLEELYQTK 359

Query: 124 GI 126
            I
Sbjct: 365 SI 359

[Close]

BLAST of Sed0026074 vs. ExPASy TrEMBL
Match: A0A2G3AMB5 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_03257 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.0e-29
Identity = 75/122 (61.48%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 9   KFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSK 68
           KF++EKFDG +NF LWQVQVKDVLIQSGL++ALK RP+   SEK  +D   ++S    SK
Sbjct: 211 KFEIEKFDGRINFDLWQVQVKDVLIQSGLYKALKERPT---SEKGDKDSEKSQS----SK 270

Query: 69  GSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGISTAKELWEKLEAMYQAKGIQIG 128
            S+K  +SD+EWEE+D++AAS IRL LAKNVL NV G+ST KELWEKLE +YQ K ++  
Sbjct: 271 DSEKFRISDEEWEELDMKAASPIRLFLAKNVLANVIGLSTTKELWEKLEELYQTKSLK-N 324

Query: 129 CT 131
           CT
Sbjct: 331 CT 324

[Close]

BLAST of Sed0026074 vs. ExPASy TrEMBL
Match: A0A444X3K2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g103423 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-27
Identity = 69/125 (55.20%), Postives = 85/125 (68.00%), Query Frame = 0


Query: 1   MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGST 60
           ++ + S+VK ++EKFDG +NFGLWQ+QVKDVLIQSGLH+ALK + SG             
Sbjct: 40  VSGYSSAVKLEIEKFDGRINFGLWQIQVKDVLIQSGLHKALKKKISG------------- 99

Query: 61  ESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGISTAKELWEKLEAMY 120
                         + D+EWEE+DLRAASAIRL LAKNVL NV G+  AKELW+KLE +Y
Sbjct: 100 --------------IKDEEWEELDLRAASAIRLCLAKNVLANVQGMKIAKELWDKLEGLY 137

Query: 121 QAKGI 126
           QAKGI
Sbjct: 160 QAKGI 137

[Close]

BLAST of Sed0026074 vs. ExPASy TrEMBL
Match: A0A6A3CWI3 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001713pilonHSYRG00162 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 71/119 (59.66%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 7   SVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGY 66
           S +FD+EKFDG +NFGLWQVQVKD+LIQSGL++ALKG+P+      S  +G   +     
Sbjct: 2   SFRFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPA------SLSEGKEPDKPSDS 61

Query: 67  SKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGISTAKELWEKLEAMYQAKGI 126
           S    KS MS++EWEE+D+RAAS IRL LAKNVL NV   S+ KELWEKLE MYQAK +
Sbjct: 62  SGDKGKSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSL 114

The following BLAST results are available for this feature:

BLAST of Sed0026074 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	2.4e-44	80.00	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
KAF7802225.1	2.2e-34	66.40	cytochrome p450 [Senna tora]	[more]
KAF7810708.1	6.1e-32	64.00	cytochrome p450 [Senna tora]	[more]
KAF3622233.1	3.0e-31	63.64	hypothetical protein FXO38_31400 [Capsicum annuum] >KAF3630407.1 hypothetical pr...	[more]
KAF5463231.1	6.7e-31	62.50	hypothetical protein F2P56_019161 [Juglans regia]	[more]

BLAST of Sed0026074 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	8.5e-13	34.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Sed0026074 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG82	1.1e-44	80.00	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A2G2YJH4	1.0e-29	59.84	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_25006 PE=3 SV=1	[more]
A0A2G3AMB5	3.0e-29	61.48	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_03257 PE=4 SV=1	[more]
A0A444X3K2	1.7e-27	55.20	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g103423 PE=4 SV=1	[more]
A0A6A3CWI3	2.2e-27	59.66	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]

BLAST of Sed0026074 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 80..126 e-value: 3.9E-7 score: 29.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..71
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 5..125
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 5..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026074.1	Sed0026074.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding