Sed0026071 (gene) Chayote v1

Overview


Name	Sed0026071
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Zinc finger CCCH domain-containing protein 20
Location	LG11: 21783224 .. 21784371 (-)
RNA-Seq Expression	Sed0026071
Synteny	Sed0026071

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAACCGACCACGGTTCAAAAACCCACCACCGTCTCTAAAAAAAAAAACTGACAGTTCCATTTTCCATCTTCAAAACCCTTCCCACTCTGTCCCTCTCTCCCACAATTTCACCACCATCGCTGAATCAATGCTCCTCCATCCGACGGCCCACATTTCACCCTGCCCCGGACACGTGTCGCCGCCGCCCATGGACTTCGATTCCTCCCTCTGGGGCGATGACCGATTCCGGATGTATGAGTTCAAAGTCCGCACCTGCGCACGTGGGAGGTCGCACGATTGGACCAAATGCCCCTACGCCCACGCCGGCGAGAAGGCTCGCCGCCGGGACCCCAGGAACTTCAACTATTCCGCCACTGAGTGCCCTGATTCGCGCCATGGGGTTTGTACCAAAGGGGACGCCTGTGACCTCGCTCATGGAACCTTCGAGATTTGGCTCCACCCGGATCGCTACCGGACTCAGCCCTGCCGCGACGGAATCGCCTGCCGCCGCCGTATCTGTTTCTTCGCCCACACGCCCGACCAACTCCGCATTCCGGCGAAACAGAGCCTCCGGTCTCCAAGGGCGGCCGCTGCGCTATCCTCTCCCACTTCGACCCTATTCTCGCCCTTGTCGGAGTCGCCGCCGTTGTCGCCGGTCAGCCCTGTAACCACCGGCGACGAATCGTTCGGCAGATTGGTCGCATGGATGCAGAAGGTTAAGATAGTTGAGGAATTAAAGAGAAGTCCGGCGGTCTCCGGCTTTGGTTCAAGTCTTCGACGGAGCTCCGGCGGATTGGATGGGTGGGATATGAATTACGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACATTCGAGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCCATGTTGATATTGGCCGGATCTCGAAGTTAATTTCAGATGAAGCACAACAAAGAAGGCATGGATATTTCAATCTGAGTTTTCTGTGAATCTAATCCTTCCGTTTTTTTTTTTAAATTTATTTATTTTTATTTTTGCATTTTCTTTTTGCTTTCTACTCATTCCTGTAAATTGATTTAGTGTGTTAATATGTGGACCAAGTGAGTACTGCCTTTCCCCATTTGTACATACAACTGAAAGAGAATCAATAAATTTCTTTATGTTAC

mRNA sequence

ATGAGTAACCGACCACGGTTCAAAAACCCACCACCGTCTCTAAAAAAAAAAACTGACAGTTCCATTTTCCATCTTCAAAACCCTTCCCACTCTGTCCCTCTCTCCCACAATTTCACCACCATCGCTGAATCAATGCTCCTCCATCCGACGGCCCACATTTCACCCTGCCCCGGACACGTGTCGCCGCCGCCCATGGACTTCGATTCCTCCCTCTGGGGCGATGACCGATTCCGGATGTATGAGTTCAAAGTCCGCACCTGCGCACGTGGGAGGTCGCACGATTGGACCAAATGCCCCTACGCCCACGCCGGCGAGAAGGCTCGCCGCCGGGACCCCAGGAACTTCAACTATTCCGCCACTGAGTGCCCTGATTCGCGCCATGGGGTTTGTACCAAAGGGGACGCCTGTGACCTCGCTCATGGAACCTTCGAGATTTGGCTCCACCCGGATCGCTACCGGACTCAGCCCTGCCGCGACGGAATCGCCTGCCGCCGCCGTATCTGTTTCTTCGCCCACACGCCCGACCAACTCCGCATTCCGGCGAAACAGAGCCTCCGGTCTCCAAGGGCGGCCGCTGCGCTATCCTCTCCCACTTCGACCCTATTCTCGCCCTTGTCGGAGTCGCCGCCGTTGTCGCCGGTCAGCCCTGTAACCACCGGCGACGAATCGTTCGGCAGATTGGTCGCATGGATGCAGAAGGTTAAGATAGTTGAGGAATTAAAGAGAAGTCCGGCGGTCTCCGGCTTTGGTTCAAGTCTTCGACGGAGCTCCGGCGGATTGGATGGGTGGGATATGAATTACGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACATTCGAGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCCATGTTGATATTGGCCGGATCTCGAAGTTAATTTCAGATGAAGCACAACAAAGAAGGCATGGATATTTCAATCTGAGTTTTCTGTGAATCTAATCCTTCCGTTTTTTTTTTTAAATTTATTTATTTTTATTTTTGCATTTTCTTTTTGCTTTCTACTCATTCCTGTAAATTGATTTAGTGTGTTAATATGTGGACCAAGTGAGTACTGCCTTTCCCCATTTGTACATACAACTGAAAGAGAATCAATAAATTTCTTTATGTTAC

Coding sequence (CDS)

ATGAGTAACCGACCACGGTTCAAAAACCCACCACCGTCTCTAAAAAAAAAAACTGACAGTTCCATTTTCCATCTTCAAAACCCTTCCCACTCTGTCCCTCTCTCCCACAATTTCACCACCATCGCTGAATCAATGCTCCTCCATCCGACGGCCCACATTTCACCCTGCCCCGGACACGTGTCGCCGCCGCCCATGGACTTCGATTCCTCCCTCTGGGGCGATGACCGATTCCGGATGTATGAGTTCAAAGTCCGCACCTGCGCACGTGGGAGGTCGCACGATTGGACCAAATGCCCCTACGCCCACGCCGGCGAGAAGGCTCGCCGCCGGGACCCCAGGAACTTCAACTATTCCGCCACTGAGTGCCCTGATTCGCGCCATGGGGTTTGTACCAAAGGGGACGCCTGTGACCTCGCTCATGGAACCTTCGAGATTTGGCTCCACCCGGATCGCTACCGGACTCAGCCCTGCCGCGACGGAATCGCCTGCCGCCGCCGTATCTGTTTCTTCGCCCACACGCCCGACCAACTCCGCATTCCGGCGAAACAGAGCCTCCGGTCTCCAAGGGCGGCCGCTGCGCTATCCTCTCCCACTTCGACCCTATTCTCGCCCTTGTCGGAGTCGCCGCCGTTGTCGCCGGTCAGCCCTGTAACCACCGGCGACGAATCGTTCGGCAGATTGGTCGCATGGATGCAGAAGGTTAAGATAGTTGAGGAATTAAAGAGAAGTCCGGCGGTCTCCGGCTTTGGTTCAAGTCTTCGACGGAGCTCCGGCGGATTGGATGGGTGGGATATGAATTACGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACATTCGAGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCCATGTTGATATTGGCCGGATCTCGAAGTTAA

Protein sequence

MSNRPRFKNPPPSLKKKTDSSIFHLQNPSHSVPLSHNFTTIAESMLLHPTAHISPCPGHVSPPPMDFDSSLWGDDRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSRHGVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPAKQSLRSPRAAAALSSPTSTLFSPLSESPPLSPVSPVTTGDESFGRLVAWMQKVKIVEELKRSPAVSGFGSSLRRSSGGLDGWDMNYEEEPAMERVESGRNIRAQMYAKLMRENSMLILAGSRS

Homology

[Close]

BLAST of Sed0026071 vs. NCBI nr
Match: KAA0060981.1 (zinc finger CCCH domain-containing protein 20 [Cucumis melo var. makuwa])

HSP 1 Score: 381.3 bits (978), Expect = 7.6e-102
Identity = 200/306 (65.36%), Postives = 222/306 (72.55%), Query Frame = 0


Query: 41  IAESMLLHPTAHISP---------------CPGHVSP------PPMDFDSSLWGD----- 100
           IAESMLL+PTAHIS                  GHVSP        MDFDSSLW D     
Sbjct: 2   IAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLPA 61

Query: 101 -------DRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSRH 160
                  D+FRMYEFKVR+CARGRSHDWTKCPYAH GEKARRRDPR FNYS  ECPD RH
Sbjct: 62  PVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLRH 121

Query: 161 GVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPAKQSLRS 220
           G C KGDAC+ AHGTFEIWLHPDRYRTQPCRDG  CRRR+CFFAHT +QLRIP KQS+RS
Sbjct: 122 GCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVRS 181

Query: 221 PR----AAAALSSPTSTLFSPLSESPPLSPVSPVTTGDESFGRLVAWMQKVKIVEELKRS 280
           PR    A  A+SSPTS L SP S+SPPLSP+SPV +G ESF RLVA M  +++ +ELK +
Sbjct: 182 PRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRL-DELKTN 241

Query: 281 PAVSGFGSSLRRSSGGLDGWDMNYEEEPAMERVESGRNIRAQMYAKLMRENSM-----LI 305
           P VS F  +LRR+SG  D WD   EEEPAMERVESGRN+RAQMYAKLMRENS+     LI
Sbjct: 242 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 301

[Close]

BLAST of Sed0026071 vs. NCBI nr
Match: KAG6598310.1 (Zinc finger CCCH domain-containing protein 49, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 378.6 bits (971), Expect = 4.9e-101
Identity = 197/306 (64.38%), Postives = 220/306 (71.90%), Query Frame = 0


Query: 41  IAESMLLHPTAHISP---------------CPGHVSP------PPMDFDSSLWGD----- 100
           I ESM L+PT HIS                  G+VSP        MD+DSSLW D     
Sbjct: 2   INESMFLNPTPHISSWDSLDDPAAAIPSYFTAGNVSPLDSPTAAVMDYDSSLWEDQDLPA 61

Query: 101 -------DRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSRH 160
                  D FRMYEFKVR CARGRSHDWTKCPYAHAGEKARRRDPR F YS TECPD RH
Sbjct: 62  MVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFKYSGTECPDLRH 121

Query: 161 GVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPAKQSLRS 220
           G C KGDACD AHG FEIWLHPDRYRTQPCRDG  CRRR+CFFAH+ +QLRIP KQS+RS
Sbjct: 122 GCCMKGDACDYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIRS 181

Query: 221 PR----AAAALSSPTSTLFSPLSESPPLSPVSPVTTGDESFGRLVAWMQKVKIVEELKRS 280
           PR    AA+A+SSPTS L S  S+SPP+SP+SP+TTG ESF RLVA M  +   +ELK +
Sbjct: 182 PRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVALMHNLHF-DELKTN 241

Query: 281 PAVSGFGSSLRRSSGGLDGWDMNYEEEPAMERVESGRNIRAQMYAKLMRENSM-----LI 305
           P +SGFG + RR+SG  D WD + EEEPAMERVESGRN+RAQMYAKLMRENS+     LI
Sbjct: 242 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 301

[Close]

BLAST of Sed0026071 vs. NCBI nr
Match: KAG7029281.1 (Zinc finger CCCH domain-containing protein 49, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 377.1 bits (967), Expect = 1.4e-100
Identity = 196/306 (64.05%), Postives = 220/306 (71.90%), Query Frame = 0


Query: 41  IAESMLLHPTAHISP---------------CPGHVSP------PPMDFDSSLWGD----- 100
           I ESM L+PT HIS                  G+VSP        MD+DSSLW D     
Sbjct: 2   INESMFLNPTPHISSWDSLDDPAAAIPSYFTAGNVSPLDSPTAAVMDYDSSLWEDQDLPA 61

Query: 101 -------DRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSRH 160
                  D FRMYEFKVR CARGRSHDWTKCPYAHAGEKARRRDPR F YS TECPD RH
Sbjct: 62  MVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFKYSGTECPDLRH 121

Query: 161 GVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPAKQSLRS 220
           G C KGDAC+ AHG FEIWLHPDRYRTQPCRDG  CRRR+CFFAH+ +QLRIP KQS+RS
Sbjct: 122 GCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIRS 181

Query: 221 PR----AAAALSSPTSTLFSPLSESPPLSPVSPVTTGDESFGRLVAWMQKVKIVEELKRS 280
           PR    AA+A+SSPTS L S  S+SPP+SP+SP+TTG ESF RLVA M  +   +ELK +
Sbjct: 182 PRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVALMHNLHF-DELKTN 241

Query: 281 PAVSGFGSSLRRSSGGLDGWDMNYEEEPAMERVESGRNIRAQMYAKLMRENSM-----LI 305
           P +SGFG + RR+SG  D WD + EEEPAMERVESGRN+RAQMYAKLMRENS+     LI
Sbjct: 242 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 301

[Close]

BLAST of Sed0026071 vs. NCBI nr
Match: XP_022951066.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata])

HSP 1 Score: 376.3 bits (965), Expect = 2.4e-100
Identity = 199/307 (64.82%), Postives = 225/307 (73.29%), Query Frame = 0


Query: 41  IAESMLLHPTAHISP----------------CPGHVSP------PPMDFDSSLWGD---- 100
           I ESMLL+P+AH S                   GHVSP        M+FDSS W +    
Sbjct: 2   ITESMLLNPSAHFSSWDSLDDPTAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWEEQELP 61

Query: 101 --------DRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSR 160
                   D FRMYEFKVR+CARGRSHDWTKCPYAH GEKARRRDPR FNYS TECP  R
Sbjct: 62  AAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFNYSGTECPALR 121

Query: 161 HGVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPAKQSLR 220
           HG C KGDAC+ AHGTFEIWLHPDRYRTQPCRDGIACRRR+CFFAHT +QLRIPAKQSL 
Sbjct: 122 HGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 181

Query: 221 SPRA----AAALSSPTSTLFSPLSESPPLSPVSPVTTGDESFGRLVAWMQKVKIVEELKR 280
           SPRA    A+A++SPTS L SP  +SPP+SP+SPVTTG ESF RLV  M  +++ ++ K+
Sbjct: 182 SPRAAKEIASAVTSPTSILISP--DSPPMSPISPVTTGGESFSRLVPLMHNLQL-DKSKK 241

Query: 281 SPAVSGFGSSLRRSSGGLDGWDMNYEEEPAMERVESGRNIRAQMYAKLMRENSM-----L 305
           +PAVSGF SS RR+SGG D WD  +EEEPAMERVESGRN+RAQMYAKLMRENS+     L
Sbjct: 242 NPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPL 301

[Close]

BLAST of Sed0026071 vs. NCBI nr
Match: XP_008444505.1 (PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 [Cucumis melo])

HSP 1 Score: 376.3 bits (965), Expect = 2.4e-100
Identity = 198/306 (64.71%), Postives = 220/306 (71.90%), Query Frame = 0


Query: 41  IAESMLLHPTAHISP---------------CPGHVSP------PPMDFDSSLWGD----- 100
           IAESMLL+PTAHIS                  GHVSP        MDFDSSLW D     
Sbjct: 2   IAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLPA 61

Query: 101 -------DRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSRH 160
                  D+FRMYEFKVR+CARGRSHDWTKCPYAH GEKARRRDPR FNYS  ECPD RH
Sbjct: 62  PVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLRH 121

Query: 161 GVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPAKQSLRS 220
           G C KGDAC+ AHGTFEIWLHPDRYRTQPCRDG  CRRR+CFFAHT +QLRIP KQS+RS
Sbjct: 122 GCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVRS 181

Query: 221 PR----AAAALSSPTSTLFSPLSESPPLSPVSPVTTGDESFGRLVAWMQKVKIVEELKRS 280
           PR    A  A+SSPTS L SP S+SPPLSP+SPV +G ES  RLVA M  +++ +E K +
Sbjct: 182 PRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESSSRLVALMHSLRL-DEXKTN 241

Query: 281 PAVSGFGSSLRRSSGGLDGWDMNYEEEPAMERVESGRNIRAQMYAKLMRENSM-----LI 305
           P VS F  +LRR+SG  D WD   EEEPAMERVESGRN+RAQMYAKLMRENS+     LI
Sbjct: 242 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 301

[Close]

BLAST of Sed0026071 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.8e-61
Identity = 132/254 (51.97%), Postives = 159/254 (62.60%), Query Frame = 0


Query: 58  GHVSPPPMDFDSSLWGDDRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNY 117
           G  S P  D  SS    D FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPR F+Y
Sbjct: 76  GDESSPLTDSFSS----DEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHY 135

Query: 118 SATECPDSRHGVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQL 177
           S T CP+ R G C +GD+C+ +HG FE WLHP RYRTQPC+DG +CRRRICFFAHT +QL
Sbjct: 136 SGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQL 195

Query: 178 RI-PAKQSLRSPRAAAALSSPTSTL----FSPLSESPPLSPVSPVTTGDESFGRLVAWMQ 237
           R+ P          +   +SPTS L    FSP SESPPLSP         S G L+A M+
Sbjct: 196 RVLPCSLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLSP---------STGELIASMR 255

Query: 238 KVKI------VEELKRSPAVSGFGSSLRRSSGGLDGW----DMNYEEEPAMERVESGRNI 297
           K+++           RS     F SSLR        W    +   EE PAME VESG+ +
Sbjct: 256 KMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAAT--WPRIREFEIEEAPAMEFVESGKEL 314

[Close]

BLAST of Sed0026071 vs. ExPASy Swiss-Prot
Match: O82199 (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.2e-59
Identity = 122/258 (47.29%), Postives = 147/258 (56.98%), Query Frame = 0


Query: 75  DRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSRHGVCTKGD 134
           D FRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPR F+YS T CP+ R G C +GD
Sbjct: 77  DHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCKRGD 136

Query: 135 ACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPAKQSLRSPRAAAAL 194
           AC+ +HG FE WLHP RYRTQPC+DG  CRRR+CFFAH+PDQ+R+   QS     +   L
Sbjct: 137 ACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSPDRVDSFDVL 196

Query: 195 SSPTSTLF----SPLSESPPLSPVSPVTTGDESFGRLVA--------------WMQKVKI 254
           S      F    SP S SPP+SP     +      R +                + KVK 
Sbjct: 197 SPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNLGNDVVASLRNLQLNKVKS 256

Query: 255 VEELKRSPAVSGFGSSLRRSSGGLDG------------------WDMNYEEEPAMERVES 297
                 +  + G+GS      G + G                  W+   EEEPAMERVES
Sbjct: 257 SLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPGFMNIWENGLEEEPAMERVES 316

[Close]

BLAST of Sed0026071 vs. ExPASy Swiss-Prot
Match: Q9M0G2 (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.8e-56
Identity = 143/330 (43.33%), Postives = 178/330 (53.94%), Query Frame = 0


Query: 5   PRFKNPP-PSLKKKTDSSIFHLQNPSHSVPLSHNFTTIAESMLLHPTAHISP--CPGHVS 64
           P  + PP P L++ T S  F   +P  + P       +A      P+    P   P  + 
Sbjct: 11  PTVEIPPWPVLEELTTSEFF---SPVMNSPDCSMLEALAGLQRYLPSNEPDPESYPDLLG 70

Query: 65  PPPMDFDSSLWGDDRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATE 124
           P   D     +  D FRMY+FKVR CARGRSHDWT+CPYAH GEKARRRDPR ++YS T 
Sbjct: 71  P---DSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTA 130

Query: 125 CPDSRHGVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPA 184
           CPD R G C KGD+C+ AHG FE WLHP RYRTQPC+DG  C R+ICFFAH+PDQLR   
Sbjct: 131 CPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRF-- 190

Query: 185 KQSLRSPRAAAA--LSSPT-----STLFSPLSESPPLSP-----VSPVT------TGDES 244
               RSP    +  +SSP          SP+S SPP+SP      SP+T       G  S
Sbjct: 191 -LHTRSPDRVDSFDVSSPIRARAFQLSISPVSGSPPMSPRADSESSPMTQSLSRSLGSCS 250

Query: 245 FGRLVAWMQKVKI--VEELKRSPAVSGFGS--------------SLRRSSGGLDGWDMNY 297
              +V   + ++   V+   R+  + GFGS              +     G LD W+   
Sbjct: 251 INDVVPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTRPGNLDIWEYGL 310

[Close]

BLAST of Sed0026071 vs. ExPASy Swiss-Prot
Match: Q9FU27 (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 6.1e-54
Identity = 134/293 (45.73%), Postives = 165/293 (56.31%), Query Frame = 0


Query: 75  DRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSRHGVCTKGD 134
           D FRMYEFKVR CARGRSHDWT+CP+AH GEKARRRDPR ++YS T CPD R G C +GD
Sbjct: 75  DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGGCKRGD 134

Query: 135 ACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRI-PAKQSLRSPRAAAA 194
           AC+ AHG FE WLHP RYRTQPC+DG ACRRR+CFFAHTPDQLR+ PA+QS  SPR+ A+
Sbjct: 135 ACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPAQQS--SPRSVAS 194

Query: 195 --------------------------LSSPTSTLF----SPLSESPPLSP---------- 254
                                      SSPTSTL     SP SESPPLSP          
Sbjct: 195 SPLAESYDGSPLRRQAFESYLTKTIMSSSPTSTLMSPPKSPPSESPPLSPDGAAAIRRGS 254

Query: 255 ----VSPVTTGDESFGRLVAWMQKVKIVEELKRS-PAVSGFGSSLRRSSG---------- 297
                SPV     SF +L   + KVK       S P+ S    S + ++G          
Sbjct: 255 WPGVGSPVNDVLASFRQL--RLNKVKSSPSGGWSYPSSSAVYGSPKAATGLYSLPTTPLA 314

[Close]

BLAST of Sed0026071 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.0e-49
Identity = 92/143 (64.34%), Postives = 105/143 (73.43%), Query Frame = 0


Query: 75  DRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSRHGVCTKGD 134
           D FRMYEFKVR CARGRSHDWT+CP+AH GEKARRRDPR + YS T CPD R G C +GD
Sbjct: 76  DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCKRGD 135

Query: 135 ACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRI---PAKQSLRSPRAA 194
           AC+ AHG FE WLHP RYRTQPC+DG ACRRR+CFFAHTPDQLR+     +Q   SPR  
Sbjct: 136 ACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSPRGC 195

Query: 195 AALSSPTSTLFSPLSESPPLSPV 215
               +  +   SPL+ES   SP+
Sbjct: 196 GGGGAGAAA--SPLAESYDGSPL 216

[Close]

BLAST of Sed0026071 vs. ExPASy TrEMBL
Match: A0A5A7V5C0 (Zinc finger CCCH domain-containing protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001160 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 3.7e-102
Identity = 200/306 (65.36%), Postives = 222/306 (72.55%), Query Frame = 0


Query: 41  IAESMLLHPTAHISP---------------CPGHVSP------PPMDFDSSLWGD----- 100
           IAESMLL+PTAHIS                  GHVSP        MDFDSSLW D     
Sbjct: 2   IAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLPA 61

Query: 101 -------DRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSRH 160
                  D+FRMYEFKVR+CARGRSHDWTKCPYAH GEKARRRDPR FNYS  ECPD RH
Sbjct: 62  PVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLRH 121

Query: 161 GVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPAKQSLRS 220
           G C KGDAC+ AHGTFEIWLHPDRYRTQPCRDG  CRRR+CFFAHT +QLRIP KQS+RS
Sbjct: 122 GCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVRS 181

Query: 221 PR----AAAALSSPTSTLFSPLSESPPLSPVSPVTTGDESFGRLVAWMQKVKIVEELKRS 280
           PR    A  A+SSPTS L SP S+SPPLSP+SPV +G ESF RLVA M  +++ +ELK +
Sbjct: 182 PRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRL-DELKTN 241

Query: 281 PAVSGFGSSLRRSSGGLDGWDMNYEEEPAMERVESGRNIRAQMYAKLMRENSM-----LI 305
           P VS F  +LRR+SG  D WD   EEEPAMERVESGRN+RAQMYAKLMRENS+     LI
Sbjct: 242 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 301

[Close]

BLAST of Sed0026071 vs. ExPASy TrEMBL
Match: A0A6J1HCT8 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111462347 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 1.2e-100
Identity = 200/325 (61.54%), Postives = 228/325 (70.15%), Query Frame = 0


Query: 1   MSNRPRFKNPPPSLKKKTDSSIFHLQNPSHSVPLSHNFTTIAESMLLHPTAHISPCPGHV 60
           M N   F NP P +     SS   L +P+ ++P    FT    S L  PTA +       
Sbjct: 1   MINESMFLNPTPHI-----SSWDSLDDPAAAIP--SYFTADNVSPLDSPTAAV------- 60

Query: 61  SPPPMDFDSSLWGD------------DRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKAR 120
               MD+DS LW D            D FRMYEFKVR CARGRSHDWTKCPYAHAGEKAR
Sbjct: 61  ----MDYDSLLWEDQDLPAMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKAR 120

Query: 121 RRDPRNFNYSATECPDSRHGVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRIC 180
           RRDPR FNYS TECPD RHG C KGDAC+ AHG FEIWLHPDRYRTQPCRDG  CRRR+C
Sbjct: 121 RRDPRKFNYSGTECPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVC 180

Query: 181 FFAHTPDQLRIPAKQSLRSPR----AAAALSSPTSTLFSPLSESPPLSPVSPVTTGDESF 240
           FFAH+ +QLRIP KQS+RSPR    AA+A+SSPTS L S  S+SPP+SP+SP+TTG ESF
Sbjct: 181 FFAHSSEQLRIPGKQSIRSPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESF 240

Query: 241 GRLVAWMQKVKIVEELKRSPAVSGFGSSLRRSSGGLDGWDMNYEEEPAMERVESGRNIRA 300
            RLVA M  +   +ELK +P +SGFG + RR+SG  D WD + EEEPAMERVESGRN+RA
Sbjct: 241 SRLVAMMHNLHF-DELKTNPGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRA 300

Query: 301 QMYAKLMRENSM-----LILAGSRS 305
           QMYAKLMRENS+     LILAGSR+
Sbjct: 301 QMYAKLMRENSVERVRPLILAGSRN 306

[Close]

BLAST of Sed0026071 vs. ExPASy TrEMBL
Match: A0A6J1GGI4 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111454027 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 1.2e-100
Identity = 199/307 (64.82%), Postives = 225/307 (73.29%), Query Frame = 0


Query: 41  IAESMLLHPTAHISP----------------CPGHVSP------PPMDFDSSLWGD---- 100
           I ESMLL+P+AH S                   GHVSP        M+FDSS W +    
Sbjct: 2   ITESMLLNPSAHFSSWDSLDDPTAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWEEQELP 61

Query: 101 --------DRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSR 160
                   D FRMYEFKVR+CARGRSHDWTKCPYAH GEKARRRDPR FNYS TECP  R
Sbjct: 62  AAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFNYSGTECPALR 121

Query: 161 HGVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPAKQSLR 220
           HG C KGDAC+ AHGTFEIWLHPDRYRTQPCRDGIACRRR+CFFAHT +QLRIPAKQSL 
Sbjct: 122 HGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 181

Query: 221 SPRA----AAALSSPTSTLFSPLSESPPLSPVSPVTTGDESFGRLVAWMQKVKIVEELKR 280
           SPRA    A+A++SPTS L SP  +SPP+SP+SPVTTG ESF RLV  M  +++ ++ K+
Sbjct: 182 SPRAAKEIASAVTSPTSILISP--DSPPMSPISPVTTGGESFSRLVPLMHNLQL-DKSKK 241

Query: 281 SPAVSGFGSSLRRSSGGLDGWDMNYEEEPAMERVESGRNIRAQMYAKLMRENSM-----L 305
           +PAVSGF SS RR+SGG D WD  +EEEPAMERVESGRN+RAQMYAKLMRENS+     L
Sbjct: 242 NPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPL 301

[Close]

BLAST of Sed0026071 vs. ExPASy TrEMBL
Match: A0A1S3BBA7 (LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103487803 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 1.2e-100
Identity = 198/306 (64.71%), Postives = 220/306 (71.90%), Query Frame = 0


Query: 41  IAESMLLHPTAHISP---------------CPGHVSP------PPMDFDSSLWGD----- 100
           IAESMLL+PTAHIS                  GHVSP        MDFDSSLW D     
Sbjct: 2   IAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLPA 61

Query: 101 -------DRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSRH 160
                  D+FRMYEFKVR+CARGRSHDWTKCPYAH GEKARRRDPR FNYS  ECPD RH
Sbjct: 62  PVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLRH 121

Query: 161 GVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPAKQSLRS 220
           G C KGDAC+ AHGTFEIWLHPDRYRTQPCRDG  CRRR+CFFAHT +QLRIP KQS+RS
Sbjct: 122 GCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVRS 181

Query: 221 PR----AAAALSSPTSTLFSPLSESPPLSPVSPVTTGDESFGRLVAWMQKVKIVEELKRS 280
           PR    A  A+SSPTS L SP S+SPPLSP+SPV +G ES  RLVA M  +++ +E K +
Sbjct: 182 PRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESSSRLVALMHSLRL-DEXKTN 241

Query: 281 PAVSGFGSSLRRSSGGLDGWDMNYEEEPAMERVESGRNIRAQMYAKLMRENSM-----LI 305
           P VS F  +LRR+SG  D WD   EEEPAMERVESGRN+RAQMYAKLMRENS+     LI
Sbjct: 242 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 301

[Close]

BLAST of Sed0026071 vs. ExPASy TrEMBL
Match: A0A6J1K790 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111492294 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 2.6e-100
Identity = 195/306 (63.73%), Postives = 218/306 (71.24%), Query Frame = 0


Query: 41  IAESMLLHPTAHISP---------------CPGHVSP------PPMDFDSSLWGD----- 100
           I ESM L+PT HIS                  G+VSP        MD+DSS W D     
Sbjct: 2   INESMFLNPTPHISSWDSLDDPAAAIPSYFTAGNVSPLDSPTAAVMDYDSSFWEDQDLPA 61

Query: 101 -------DRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSRH 160
                  D FRMYEFKVR CARGRSHDWTKCPYAHAGEKARRRDPR FNYS TECPD RH
Sbjct: 62  IVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLRH 121

Query: 161 GVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPAKQSLRS 220
           G C KGDAC+ AHG FEIWLHPDRYRTQPCRDG  CRRR+CFFAH+ +QLRIP KQS+RS
Sbjct: 122 GCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAVCRRRVCFFAHSSEQLRIPGKQSIRS 181

Query: 221 PR----AAAALSSPTSTLFSPLSESPPLSPVSPVTTGDESFGRLVAWMQKVKIVEELKRS 280
           PR    AA A+SSPTS L S  S+SPP+SP+SP+ TG ESF RLVA M  +   +ELK +
Sbjct: 182 PRGREIAAPAVSSPTSILISSSSDSPPMSPISPLATGGESFSRLVALMHNLHF-DELKTN 241

Query: 281 PAVSGFGSSLRRSSGGLDGWDMNYEEEPAMERVESGRNIRAQMYAKLMRENSM-----LI 305
           P +SGFG S RR+SG  D WD + EEEPAMERVESGRN+RAQMYAKLMR+NS+     LI
Sbjct: 242 PGISGFGPSFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRDNSVERVRPLI 301

[Close]

BLAST of Sed0026071 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 237.7 bits (605), Expect = 1.3e-62
Identity = 132/254 (51.97%), Postives = 159/254 (62.60%), Query Frame = 0


Query: 58  GHVSPPPMDFDSSLWGDDRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNY 117
           G  S P  D  SS    D FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPR F+Y
Sbjct: 76  GDESSPLTDSFSS----DEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHY 135

Query: 118 SATECPDSRHGVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQL 177
           S T CP+ R G C +GD+C+ +HG FE WLHP RYRTQPC+DG +CRRRICFFAHT +QL
Sbjct: 136 SGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQL 195

Query: 178 RI-PAKQSLRSPRAAAALSSPTSTL----FSPLSESPPLSPVSPVTTGDESFGRLVAWMQ 237
           R+ P          +   +SPTS L    FSP SESPPLSP         S G L+A M+
Sbjct: 196 RVLPCSLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLSP---------STGELIASMR 255

Query: 238 KVKI------VEELKRSPAVSGFGSSLRRSSGGLDGW----DMNYEEEPAMERVESGRNI 297
           K+++           RS     F SSLR        W    +   EE PAME VESG+ +
Sbjct: 256 KMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAAT--WPRIREFEIEEAPAMEFVESGKEL 314

[Close]

BLAST of Sed0026071 vs. TAIR 10
Match: AT2G25900.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 237.7 bits (605), Expect = 1.3e-62
Identity = 132/254 (51.97%), Postives = 159/254 (62.60%), Query Frame = 0


Query: 58  GHVSPPPMDFDSSLWGDDRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNY 117
           G  S P  D  SS    D FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPR F+Y
Sbjct: 76  GDESSPLTDSFSS----DEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHY 135

Query: 118 SATECPDSRHGVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQL 177
           S T CP+ R G C +GD+C+ +HG FE WLHP RYRTQPC+DG +CRRRICFFAHT +QL
Sbjct: 136 SGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQL 195

Query: 178 RI-PAKQSLRSPRAAAALSSPTSTL----FSPLSESPPLSPVSPVTTGDESFGRLVAWMQ 237
           R+ P          +   +SPTS L    FSP SESPPLSP         S G L+A M+
Sbjct: 196 RVLPCSLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLSP---------STGELIASMR 255

Query: 238 KVKI------VEELKRSPAVSGFGSSLRRSSGGLDGW----DMNYEEEPAMERVESGRNI 297
           K+++           RS     F SSLR        W    +   EE PAME VESG+ +
Sbjct: 256 KMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAAT--WPRIREFEIEEAPAMEFVESGKEL 314

[Close]

BLAST of Sed0026071 vs. TAIR 10
Match: AT2G19810.1 (CCCH-type zinc finger family protein )

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-60
Identity = 122/258 (47.29%), Postives = 147/258 (56.98%), Query Frame = 0


Query: 75  DRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSRHGVCTKGD 134
           D FRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPR F+YS T CP+ R G C +GD
Sbjct: 77  DHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCKRGD 136

Query: 135 ACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPAKQSLRSPRAAAAL 194
           AC+ +HG FE WLHP RYRTQPC+DG  CRRR+CFFAH+PDQ+R+   QS     +   L
Sbjct: 137 ACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSPDRVDSFDVL 196

Query: 195 SSPTSTLF----SPLSESPPLSPVSPVTTGDESFGRLVA--------------WMQKVKI 254
           S      F    SP S SPP+SP     +      R +                + KVK 
Sbjct: 197 SPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNLGNDVVASLRNLQLNKVKS 256

Query: 255 VEELKRSPAVSGFGSSLRRSSGGLDG------------------WDMNYEEEPAMERVES 297
                 +  + G+GS      G + G                  W+   EEEPAMERVES
Sbjct: 257 SLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPGFMNIWENGLEEEPAMERVES 316

[Close]

BLAST of Sed0026071 vs. TAIR 10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 219.9 bits (559), Expect = 2.7e-57
Identity = 143/330 (43.33%), Postives = 178/330 (53.94%), Query Frame = 0


Query: 5   PRFKNPP-PSLKKKTDSSIFHLQNPSHSVPLSHNFTTIAESMLLHPTAHISP--CPGHVS 64
           P  + PP P L++ T S  F   +P  + P       +A      P+    P   P  + 
Sbjct: 11  PTVEIPPWPVLEELTTSEFF---SPVMNSPDCSMLEALAGLQRYLPSNEPDPESYPDLLG 70

Query: 65  PPPMDFDSSLWGDDRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATE 124
           P   D     +  D FRMY+FKVR CARGRSHDWT+CPYAH GEKARRRDPR ++YS T 
Sbjct: 71  P---DSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTA 130

Query: 125 CPDSRHGVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPA 184
           CPD R G C KGD+C+ AHG FE WLHP RYRTQPC+DG  C R+ICFFAH+PDQLR   
Sbjct: 131 CPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRF-- 190

Query: 185 KQSLRSPRAAAA--LSSPT-----STLFSPLSESPPLSP-----VSPVT------TGDES 244
               RSP    +  +SSP          SP+S SPP+SP      SP+T       G  S
Sbjct: 191 -LHTRSPDRVDSFDVSSPIRARAFQLSISPVSGSPPMSPRADSESSPMTQSLSRSLGSCS 250

Query: 245 FGRLVAWMQKVKI--VEELKRSPAVSGFGS--------------SLRRSSGGLDGWDMNY 297
              +V   + ++   V+   R+  + GFGS              +     G LD W+   
Sbjct: 251 INDVVPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTRPGNLDIWEYGL 310

[Close]

BLAST of Sed0026071 vs. TAIR 10
Match: AT2G41900.1 (CCCH-type zinc finger protein with ARM repeat domain )

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-46
Identity = 86/176 (48.86%), Postives = 110/176 (62.50%), Query Frame = 0


Query: 60  VSPPPMDFDSSLWGDDRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSA 119
           V P   D  +S++  D FRMY FKVR C+R  SHDWT+CP+ H GE ARRRDPR F+YS 
Sbjct: 245 VDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSC 304

Query: 120 TECPDSRHGVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLR- 179
             CPD R G C +GD C+ AHG FE WLHP +YRT+ C+DG  C RR+CFFAHTP++LR 
Sbjct: 305 VPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELRP 364

Query: 180 --IPAKQSLRSPRAAAALSSPTSTLFSPLSESPPLSPVSPVTTGDESFGRLVAWMQ 233
                  ++ SPR+ A  ++  S L    S    +SP+SP   G+      +AW Q
Sbjct: 365 LYASTGSAVPSPRSNADYAAALSLLPGSPSGVSVMSPLSPSAAGNGMSHSNMAWPQ 420

The following BLAST results are available for this feature:

BLAST of Sed0026071 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060981.1	7.6e-102	65.36	zinc finger CCCH domain-containing protein 20 [Cucumis melo var. makuwa]	[more]
KAG6598310.1	4.9e-101	64.38	Zinc finger CCCH domain-containing protein 49, partial [Cucurbita argyrosperma s...	[more]
KAG7029281.1	1.4e-100	64.05	Zinc finger CCCH domain-containing protein 49, partial [Cucurbita argyrosperma s...	[more]
XP_022951066.1	2.4e-100	64.82	zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata]	[more]
XP_008444505.1	2.4e-100	64.71	PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 [C...	[more]

BLAST of Sed0026071 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82307	1.8e-61	51.97	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O82199	2.2e-59	47.29	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M0G2	3.8e-56	43.33	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9FU27	6.1e-54	45.73	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
Q6L4N4	2.0e-49	64.34	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Sed0026071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5C0	3.7e-102	65.36	Zinc finger CCCH domain-containing protein 20 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1HCT8	1.2e-100	61.54	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1GGI4	1.2e-100	64.82	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662...	[more]
A0A1S3BBA7	1.2e-100	64.71	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis me...	[more]
A0A6J1K790	2.6e-100	63.73	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of Sed0026071 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25900.1	1.3e-62	51.97	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.2	1.3e-62	51.97	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G19810.1	1.5e-60	47.29	CCCH-type zinc finger family protein	[more]
AT4G29190.1	2.7e-57	43.33	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G41900.1	1.3e-46	48.86	CCCH-type zinc finger protein with ARM repeat domain	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 116..142 e-value: 0.079 score: 22.1 coord: 151..174 e-value: 12.0 score: 7.6
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 116..143 score: 10.652499
None	No IPR available	GENE3D	4.10.1000.10		coord: 112..185 e-value: 5.1E-7 score: 31.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR14493:SF116	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20	coord: 70..296
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 70..296

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026071.1	Sed0026071.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding