Sed0026060 (gene) Chayote v1

Overview


Name	Sed0026060
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RAB GTPase homolog A4D
Location	LG14: 2018700 .. 2024080 (-)
RNA-Seq Expression	Sed0026060
Synteny	Sed0026060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATACCCCACAATGGCCGTTGCTCCATTTCAATCCCTTTTCCTCCTCTTTCATTCACCATCTTCCATTCCCATTTCCCAAATCCCCACAATATTCTCTGAAACGATTCCCTTCAAACCCAGCTCTGTTTTCGGTTCAATTTCTTGAGGGGATGATTGATTGATTCTCTTCACCTCCGCGTTTGATTCCAGGGGTTTCCCACTTTTTGTGATCCGGAAATGGGAAATTTCTTTCAGTTTTGATGCTCTTATCTGTTTAATCTGCGCGTTTTGGAGCTGGGTTTTGTGGGGAGGGGATTTTGAAGGGAGAATGTCGAATCTGTATGGGGATTATAATCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATTGGCGATTCTGCCGTTGGCAAGACCCAACTCCTTGCTCGATTTTCGAAGGATGAGTTTAGCCTCGATTCGAAAGCTACTATCGGCGTCGAGTTTCAGACTAAGACTCTTGTCATTGATAAAAAAACTGTCAAAGCCCAGATATGGGATACTGCTGGACAAGAAAGGTATGCATGCCCTCTTTCCCTTTTCTTTTGTGAGGTTCATTGCTGTTTCTTGTTGAGTACTTCATTGTTGAGAAATCGAAAATAGAAATGTGGCCTTGTGCGTTTGGTAATTAATTGGTTGGGTGGATAAATGATTATATGATAGAAGGTAGAATTTGACAGCAAAGAGTTTGGAAGCCTCTTTAGAACTACAAATGGTTTTGTTTTTGTTTTCTTGTGCTCCCAAATCCAAAGAGAATTTGGACTTTATTTGGGTTTGAATGCAGTTGTGGTCATTTTTTTTAAACCTGAAAATCTGAGTTGCGCTCCACTATACCCGAGGTAACCACGTTCGTCCCTAAGCCAAGTACCGAGAGACATTGAAGTAAATGAGATACAGAAGGTGTTTACAAATTAATATCGCAAGTGAATCTCGAATCTGAGACCTTGAGGGGAGCACACCTTCAAAATCCAACCTTTCGACCACCGCACCACCCCTTGAGGACAATGCAGTTGCGGTGATTGGAATTACATCCAAGTTCTATTATATTCATTCTGGTAAAAGTTGGAAGTCAACTTCGTTAAATTAGGCGGATCAACTTTTGAATCGATAGGAATGCCAATTATGATGAAAATGCCAAGTCTTAGGAGGAAATCATGAAAATGGTGTTAGACAATGATGTTTAGTTGAAGTTTTTCCCTCATTTTAGAATTGACTTTGAGCGAATTTCTTCCTCCACTTAAGTTGTTAATTGTAGGTTTTGCTGTTTTTTATTACACTTAGTTGTAGCATGCAATCTTGTGCTATTTCAGATTGAATAAGATTATTGTTATTAGTAAGTCATATATTCGTTTCAAGTATGATAGGAATGGCTTGCTAGAAGTAAGCTAATGTGAAGGTGAAGGGTTTGAATTATCTGAAATGCAGGCAATTGCGAGTGTTGTAGTCTATCAAATGGGAATTCACATACAAGGGGAGAGTTCGAAAAAGTTGTGTAAAATCAGGGGAAGTTGGAGATATCTCTCGTGGTTGCAAAATTTTGTACATTGGTTCAGAAGATCGATACAAAAGTGTTGTTCCCATTCGGGAAGTTCGGTCAAAATGGCAATTAGAGCATTTTATTTGTGATGCCTAGAGTGAGAATTATGGATAGTAGTAGGAAGGATTTGAAATTGCGAATAGGATTGGTTGTTTGCTCGATAGGATGAATAAATTGTTGCAGTAAAGGGAGGAGGAACAATTGGTGATAGAATAGAGGCATTCTTGATGATGGGCAGGTGATTCTCAAGCCGATGAATGAAGGAAAGACTAATGAGACGGTTAGGAGGAATACGAGTATGAATGAATTAATTGTAAGAAGGCTAGAGTTTCCTCAGTTTAATGTAGTTGATCCAGACACATGGATGAATCTTTCAAGAAAAAGGATTTTTTTAGGCTAATCAGCTGATAAAGGAAGAATGGATGGAAAGCTATCAGTATGGTGAGCGAGGCTATTGCATGGTATAAGTGGATGGCGAATAATCAATATGCTCGATTTCTTATGTCGCATGAAGGCACGCTATATCAGCATTTATTACCTTTCCAACAGGGCTTGTGTGGGAACAAAAAGATGCTCGAAATCGTAGCAGCTCATCACTCGCACATACATGATACCTTGGTTAACTCTGTAAATCGAACTTAGAAGTAATTTAGTGGTTTGTCAGACGAATGGAGGCGACCTCAAGGTGAAAGCTTGGACGTGATTGATTGAATTGATAAACAAGTTTATTGTATGTTTCAAGGAAGAAAATTGGGAAACCAGAACAATGTAGGCTAGGTAGGATCAAGTTAGTTCGATATGTGCTATACAATGCCTGGAGTTAGGAGGGGTACATGAATGAACCGTGGCCACATCCGAATGAGAGAGAATCTGAAGATATATGGAAGACTGATACTATCTAGGATCTAGATTATATCGAAAGATAAGAGAAGTACAAACTAACCAAGTATTTGATAGGTATTTGAACCTCTCATTCTTGAGAACCACTCTCAAGCCCTAATTCTCATACAATTTCAAGATGCCTTCACTCTAACTATCCTTGTCTATTTATAAGCACTAGCCTCTAACTTGCCCTCCAAGTACAGCTAACATACCCTTACATTTATTATTCCTTAATATTGCTAAAACTCAAACCTATCAATAACCTCAAGGTTAGTATAGAAAAGAGTGGACCACAAAACAAAAAACATTAAAGGCAAAATTCAAAAAAAAAAAAAATACCCAGCATGTTGTTGATGTAGTAAGCCCAAAAAACTTCCAATAACCCACACAATTCAAAAGCCCAACAACCAATTTCAGCTCCACTTCTCATATTAAAAGGCCCACATAAAATATTTTGTGCAGCCCATACTCATATTCTGTATATTTTGGAGTTCTAACTTCAAACCACAAACAAGCCCAACTTTAAATCAAACTCAATTTCTCTGTTTTTGGTACTTTGAGCATCTTTTTCTCTAATTCGAACAGTTTCTCCTCTTTTTGTTTTCATTTCAAATCCTCGAACTCCGCTCTTCTTCTTTCTTTTTCTTCTCTAAGTTGCCTCAATTCTTCTCTCCAAGAATCAATCATCGCTATCATACGATTGAGTCCTTCACGAACAAACTCAAAATCACTTCAGTCCCCAAGAGGTGGCATAGTGGTTGAAGACTTAGGCTTTGAGGGTATGCTCCCCTCAAGATCCTGAGTTCAAGTCTTCCATGTGACATTACTCTTTCGATGTCTTCGGTGCCTAGCCTAAGGACGGGCGTGGTTACCTTAATTCAAAAACTCAAAATCACTTCCATCCATGATCAAGATCTTAATGCTCTAATACCAATTGATAAGATCCAGAATCTAGATTTATCAAAAGGAAAGGAACTACAAGATAAACCAAGATTTAATAGGTCTTGGAACCTCACATTCTCTAGAGAATACTCTCTAAGAGCCTACAAGATTTCTCTCAATATTTTGGTGCCTAAAACCTTACCCAACCCTCTCTATTTATAACCATACACTCTAATTTACTCCCCAATTAATTGCAAACATACCCCTATATTAATCCTTATTCCTCTAAGGCCCAACCCTATCAAAGACATGGTTAAAAAATCTTAATTGAATTGATAGTTCTACATATATCAACTAGGTGCACATTTCTTTTTGGTAGCTCAATGGTAGGAATTCCAAAGTTAGGCATGCTTAACTTGGAGCAATTCTAGATTGGTTGGCCTCATATAAATTTTTCGATTGAGCATGTGAGTGAGGACAAAACATGCTAAAAAAATTTGTACTTGTCTTTGGGGACATTCTTCACTCTTATAAAAAAAGTTTGAGACAAGTAGGTAACATGATCAGGTCGGTCGTAAGGGATTGTCAAGGTTGAATTTGGATTCCGAATCCTGGTTCAAATTGGATGAGGAACTCAGTGTAGGACCTCGATAGATGGGAATGCAAACATGAGGCGAGTGATGTAAGATTACACGTGAGAAAAGGAAATGAAATGAGAGTTATGGAGAAATTTAGTGAAATCAAAGAGAGTTATTCTGTTTAAAAGATTTAATTCACAAGTATCTTTTCCATTTGGAGAGTTTTATCATATTGTTCATTGAAAGAGATCGTAGAAACAAATAGTAAGAAAATGTATATCAGTTTATATACTATAACCTCTTGAAGTTAAGAAAAATATTTCAGTAAATACAATGAATAAATTTGATCCAATGCGTACAGGGGTTCTTGAAAAACATTGTTGGCATATGATTTTCAGGGGGAGAATACATCTACTAAAGAAATTTTAGGATGTAAAGTTCAGAACTAATAATAAGAAAAAGAATATTCATTAGAAGCCTGATGATCAACTGTTTCTAGCTCTGCTACACATAATTAGATCCACTTAGTCCGACATGAAATTGATAAGTAATGATATCTTGACTCCAATAAATTAAAAGGAGTTAGATTCTGCAATTGATACTTTTTTACATGAATTCTTTGAAGTTGGAGTGTTACATCGATTAAATCTTTGTATTATCTCCTGAAATAAAGTGTTGTATGTTTGAAGTGTATCTGCTACTCATAAGTTCATAATTAAACAGCTTTATTGGTGAATGATCGTCAGACATTAAAACAATGTGTCATTTGGAATGCAAACATTTGAGCTCATGGCTCATCAATTATAATATTTTATCATATGGTTTCTAATTAAATAAATTAATAAATGTTGATGTTGTTATGCACTTGGTTAGATATAGTTTCTGAGAATATCTCGTTTACCACGTTGCCAGGTACCGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCAATGCTAGTTTACGACATGACGAAGCGCCAGTCGTTCGACCACATGGCAAGGTGGCTGGAGGAGCTAAGAGGACATGTTGATAAGAACATAGTGATAATGCTGATCGGAAACAAATGCGACCTAGGAAGCCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTCGCCGAACGAGAAAACCTGTTCTTCATGGAGACATCAGCTCTCGAGTCCACAAACGTGGAAACGGCATTCTTCACAATTCTAACAGAGATATATAGGATAATCAGCAAGAAAAGTCTAGCAGCTGGGGAAGAAATAGATATTGGTGTGAATCCAACTCATTTTATAGGGACTAACATTGTTGTTCCTGGACAGGACCAGGATTCTGGGAGAAAAGGGTGTTGCTTTCGCTCATGAATTTCACATAATTACATGATCATTTCAGTTGGGACATTGTTTTTCTATTCCACTTGTTTGGATTTATACTAAGAAAAAAAAAAGAATCATGTATTTGTAATTTGTAAAGGGACTGGCTTGATAACAT

mRNA sequence

GGATACCCCACAATGGCCGTTGCTCCATTTCAATCCCTTTTCCTCCTCTTTCATTCACCATCTTCCATTCCCATTTCCCAAATCCCCACAATATTCTCTGAAACGATTCCCTTCAAACCCAGCTCTGTTTTCGGTTCAATTTCTTGAGGGGATGATTGATTGATTCTCTTCACCTCCGCGTTTGATTCCAGGGGTTTCCCACTTTTTGTGATCCGGAAATGGGAAATTTCTTTCAGTTTTGATGCTCTTATCTGTTTAATCTGCGCGTTTTGGAGCTGGGTTTTGTGGGGAGGGGATTTTGAAGGGAGAATGTCGAATCTGTATGGGGATTATAATCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATTGGCGATTCTGCCGTTGGCAAGACCCAACTCCTTGCTCGATTTTCGAAGGATGAGTTTAGCCTCGATTCGAAAGCTACTATCGGCGTCGAGTTTCAGACTAAGACTCTTGTCATTGATAAAAAAACTGTCAAAGCCCAGATATGGGATACTGCTGGACAAGAAAGGTACCGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCAATGCTAGTTTACGACATGACGAAGCGCCAGTCGTTCGACCACATGGCAAGGTGGCTGGAGGAGCTAAGAGGACATGTTGATAAGAACATAGTGATAATGCTGATCGGAAACAAATGCGACCTAGGAAGCCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTCGCCGAACGAGAAAACCTGTTCTTCATGGAGACATCAGCTCTCGAGTCCACAAACGTGGAAACGGCATTCTTCACAATTCTAACAGAGATATATAGGATAATCAGCAAGAAAAGTCTAGCAGCTGGGGAAGAAATAGATATTGGTGTGAATCCAACTCATTTTATAGGGACTAACATTGTTGTTCCTGGACAGGACCAGGATTCTGGGAGAAAAGGGTGTTGCTTTCGCTCATGAATTTCACATAATTACATGATCATTTCAGTTGGGACATTGTTTTTCTATTCCACTTGTTTGGATTTATACTAAGAAAAAAAAAAGAATCATGTATTTGTAATTTGTAAAGGGACTGGCTTGATAACAT

Coding sequence (CDS)

ATGTCGAATCTGTATGGGGATTATAATCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATTGGCGATTCTGCCGTTGGCAAGACCCAACTCCTTGCTCGATTTTCGAAGGATGAGTTTAGCCTCGATTCGAAAGCTACTATCGGCGTCGAGTTTCAGACTAAGACTCTTGTCATTGATAAAAAAACTGTCAAAGCCCAGATATGGGATACTGCTGGACAAGAAAGGTACCGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCAATGCTAGTTTACGACATGACGAAGCGCCAGTCGTTCGACCACATGGCAAGGTGGCTGGAGGAGCTAAGAGGACATGTTGATAAGAACATAGTGATAATGCTGATCGGAAACAAATGCGACCTAGGAAGCCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTCGCCGAACGAGAAAACCTGTTCTTCATGGAGACATCAGCTCTCGAGTCCACAAACGTGGAAACGGCATTCTTCACAATTCTAACAGAGATATATAGGATAATCAGCAAGAAAAGTCTAGCAGCTGGGGAAGAAATAGATATTGGTGTGAATCCAACTCATTTTATAGGGACTAACATTGTTGTTCCTGGACAGGACCAGGATTCTGGGAGAAAAGGGTGTTGCTTTCGCTCATGA

Protein sequence

MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVIDKKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKNIVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCCFRS

Homology

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BLAST of Sed0026060 vs. NCBI nr
Match: XP_038881448.1 (ras-related protein RABA4d [Benincasa hispida])

HSP 1 Score: 424.5 bits (1090), Expect = 5.8e-115
Identity = 213/223 (95.52%), Postives = 217/223 (97.31%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFS++EFS+DSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGH DKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCCFRS 224
           SKKSLAAGEEIDIG NP  F GTNIVVPGQDQDSGRKGCCF S
Sbjct: 181 SKKSLAAGEEIDIGSNPGLFKGTNIVVPGQDQDSGRKGCCFAS 223

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BLAST of Sed0026060 vs. NCBI nr
Match: XP_004150166.1 (ras-related protein RABA4d [Cucumis sativus] >KGN53823.1 hypothetical protein Csa_014745 [Cucumis sativus])

HSP 1 Score: 423.3 bits (1087), Expect = 1.3e-114
Identity = 212/223 (95.07%), Postives = 217/223 (97.31%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFS++EFS+DSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGH DKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCCFRS 224
           SKKSLAAGEEIDIG NP  F GT+IVVPGQDQDSGRKGCCF S
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS 223

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BLAST of Sed0026060 vs. NCBI nr
Match: XP_008460801.1 (PREDICTED: ras-related protein RABA4d [Cucumis melo] >KAA0053214.1 ras-related protein RABA4d [Cucumis melo var. makuwa])

HSP 1 Score: 422.9 bits (1086), Expect = 1.7e-114
Identity = 212/223 (95.07%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFS++EFS+DSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGH DKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCCFRS 224
           SKKSLAAGEEIDIG NP  F GTNIVVPGQDQDSG KGCCF S
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTNIVVPGQDQDSGTKGCCFAS 223

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BLAST of Sed0026060 vs. NCBI nr
Match: XP_022151622.1 (ras-related protein RABA4d-like [Momordica charantia])

HSP 1 Score: 420.6 bits (1080), Expect = 8.3e-114
Identity = 212/223 (95.07%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFS++EFSLDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGH DKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCCFRS 224
           SKK+LAAGEEIDIG  P HF GTNIVVPGQD DSGRKGCCF S
Sbjct: 181 SKKTLAAGEEIDIG-GPGHFKGTNIVVPGQDSDSGRKGCCFAS 222

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BLAST of Sed0026060 vs. NCBI nr
Match: XP_022925137.1 (ras-related protein RABA4d [Cucurbita moschata] >XP_023518611.1 ras-related protein RABA4d [Cucurbita pepo subsp. pepo] >KAG7027618.1 Ras-related protein RABA4d [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 417.5 bits (1072), Expect = 7.0e-113
Identity = 209/223 (93.72%), Postives = 214/223 (95.96%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFS++EFS+DSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGH DKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFF ILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCCFRS 224
           SKKSLAAGE IDIGVNP  F GTNIVVPGQDQ  GRKGCCF S
Sbjct: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 223

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BLAST of Sed0026060 vs. ExPASy Swiss-Prot
Match: Q9LH50 (Ras-related protein RABA4d OS=Arabidopsis thaliana OX=3702 GN=RABA4D PE=1 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.5e-102
Identity = 187/223 (83.86%), Postives = 202/223 (90.58%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+++EFS+DSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA+WLEELRGH DKN
Sbjct: 61  NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALE+TNVETAF TILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCCFRS 224
           SKKSL A ++ D   N +   GT I++P + +   R GCC +S
Sbjct: 181 SKKSLTADDD-DADGNSSLLKGTRIIIPSEQESGKRGGCCGKS 222

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BLAST of Sed0026060 vs. ExPASy Swiss-Prot
Match: Q9FE79 (Ras-related protein RABA4c OS=Arabidopsis thaliana OX=3702 GN=RABA4C PE=2 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 5.8e-94
Identity = 170/220 (77.27%), Postives = 196/220 (89.09%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFS++EFS++SKATIGVEFQT+TL ID
Sbjct: 1   MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
           +KT+KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGH DKN
Sbjct: 61  RKTIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNK DLG+LRAVPTEDA+EFA+RENLFFMETSAL+S NVE +F T+LTEIYRI+
Sbjct: 121 IVIMLIGNKTDLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIV 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCC 221
           SKK+L A EE + G + +   GT IVV G++ +S  KGCC
Sbjct: 181 SKKNLVANEEGESGGDSSLLQGTKIVVAGEETESKGKGCC 220

[Close]

BLAST of Sed0026060 vs. ExPASy Swiss-Prot
Match: P25766 (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica OX=39947 GN=RGP1 PE=2 SV=2)

HSP 1 Score: 344.7 bits (883), Expect = 7.6e-94
Identity = 173/219 (79.00%), Postives = 191/219 (87.21%), Query Frame = 0


Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVIDKKTV 64
           YG+  QKIDYVFKVVLIGDSAVGK+QLLARF+++EF+LDSKATIGVEFQT+TL ID +TV
Sbjct: 8   YGEVGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTV 67

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGH DKNIVIM
Sbjct: 68  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIM 127

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKS 184
           LIGNK DLG+LR VPTEDA+EFAERENLFFMETSALESTNVE AF T+LTEIYRI+SKK+
Sbjct: 128 LIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKN 187

Query: 185 LAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCCFRS 224
           L A EE+D   N +   GT IVVPGQ+     K  C  S
Sbjct: 188 LVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 226

[Close]

BLAST of Sed0026060 vs. ExPASy Swiss-Prot
Match: Q40191 (Ras-related protein Rab11A OS=Lotus japonicus OX=34305 GN=RAB11A PE=2 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.6e-86
Identity = 162/218 (74.31%), Postives = 186/218 (85.32%), Query Frame = 0


Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVIDKKTV 64
           YGD N KIDYVFKVVLIGDSAVGK+Q+LARF+++EFSLDSK+TIGVEFQT+TLVID KTV
Sbjct: 7   YGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTV 66

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWLEELR H DKNIVI+
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVII 126

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKS 184
           LIGNKCDL + R VPTEDA+EFAE+E LFF+ETSALE+TNVE+AF T+LTEIY I++KKS
Sbjct: 127 LIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKS 186

Query: 185 LAAGEEIDIGVNPTHFIGTNIVVPGQDQD--SGRKGCC 221
           LAA E    G N     G  I++PG  Q+  + R  CC
Sbjct: 187 LAADESQGNG-NSASLSGQKIIIPGPAQEIPAKRNMCC 223

[Close]

BLAST of Sed0026060 vs. ExPASy Swiss-Prot
Match: Q40520 (Ras-related protein Rab11C OS=Nicotiana tabacum OX=4097 GN=RAB11C PE=2 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.1e-84
Identity = 158/221 (71.49%), Postives = 186/221 (84.16%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           M++ YGD +QKIDYVFKVVLIGDSAVGKTQ+LARF+++EFSLDSKATIGVEFQT+TLVI 
Sbjct: 1   MASGYGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQ 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
            K+VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWLEELR H D+N
Sbjct: 61  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIML GNK DL   RAVPTEDA+EFA++E LFF+ETSA+E+T +E AF T+LTEI+ I+
Sbjct: 121 IVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIV 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQ-DSGRKGCC 221
           +KK+LAA +E     NP    G  I+VPG  Q   G+K CC
Sbjct: 181 NKKNLAA-DENQSNSNPASLTGKKILVPGPGQVIPGKKACC 220

[Close]

BLAST of Sed0026060 vs. ExPASy TrEMBL
Match: A0A0A0KW90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152280 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 6.2e-115
Identity = 212/223 (95.07%), Postives = 217/223 (97.31%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFS++EFS+DSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGH DKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCCFRS 224
           SKKSLAAGEEIDIG NP  F GT+IVVPGQDQDSGRKGCCF S
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS 223

[Close]

BLAST of Sed0026060 vs. ExPASy TrEMBL
Match: A0A5A7UD85 (Ras-related protein RABA4d OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00440 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 8.1e-115
Identity = 212/223 (95.07%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFS++EFS+DSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGH DKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCCFRS 224
           SKKSLAAGEEIDIG NP  F GTNIVVPGQDQDSG KGCCF S
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTNIVVPGQDQDSGTKGCCFAS 223

[Close]

BLAST of Sed0026060 vs. ExPASy TrEMBL
Match: A0A1S3CDP9 (ras-related protein RABA4d OS=Cucumis melo OX=3656 GN=LOC103499562 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 8.1e-115
Identity = 212/223 (95.07%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFS++EFS+DSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGH DKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCCFRS 224
           SKKSLAAGEEIDIG NP  F GTNIVVPGQDQDSG KGCCF S
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTNIVVPGQDQDSGTKGCCFAS 223

[Close]

BLAST of Sed0026060 vs. ExPASy TrEMBL
Match: A0A6J1DE05 (ras-related protein RABA4d-like OS=Momordica charantia OX=3673 GN=LOC111019535 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.0e-114
Identity = 212/223 (95.07%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFS++EFSLDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGH DKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCCFRS 224
           SKK+LAAGEEIDIG  P HF GTNIVVPGQD DSGRKGCCF S
Sbjct: 181 SKKTLAAGEEIDIG-GPGHFKGTNIVVPGQDSDSGRKGCCFAS 222

[Close]

BLAST of Sed0026060 vs. ExPASy TrEMBL
Match: A0A6J1EAZ2 (ras-related protein RABA4d OS=Cucurbita moschata OX=3662 GN=LOC111432472 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.4e-113
Identity = 209/223 (93.72%), Postives = 214/223 (95.96%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFS++EFS+DSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGH DKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFF ILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCCFRS 224
           SKKSLAAGE IDIGVNP  F GTNIVVPGQDQ  GRKGCCF S
Sbjct: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 223

[Close]

BLAST of Sed0026060 vs. TAIR 10
Match: AT3G12160.1 (RAB GTPase homolog A4D )

HSP 1 Score: 373.6 bits (958), Expect = 1.1e-103
Identity = 187/223 (83.86%), Postives = 202/223 (90.58%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+++EFS+DSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA+WLEELRGH DKN
Sbjct: 61  NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALE+TNVETAF TILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCCFRS 224
           SKKSL A ++ D   N +   GT I++P + +   R GCC +S
Sbjct: 181 SKKSLTADDD-DADGNSSLLKGTRIIIPSEQESGKRGGCCGKS 222

[Close]

BLAST of Sed0026060 vs. TAIR 10
Match: AT5G47960.1 (RAB GTPase homolog A4C )

HSP 1 Score: 345.1 bits (884), Expect = 4.1e-95
Identity = 170/220 (77.27%), Postives = 196/220 (89.09%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVID 60
           MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFS++EFS++SKATIGVEFQT+TL ID
Sbjct: 1   MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKN 120
           +KT+KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGH DKN
Sbjct: 61  RKTIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNK DLG+LRAVPTEDA+EFA+RENLFFMETSAL+S NVE +F T+LTEIYRI+
Sbjct: 121 IVIMLIGNKTDLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIV 180

Query: 181 SKKSLAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRKGCC 221
           SKK+L A EE + G + +   GT IVV G++ +S  KGCC
Sbjct: 181 SKKNLVANEEGESGGDSSLLQGTKIVVAGEETESKGKGCC 220

[Close]

BLAST of Sed0026060 vs. TAIR 10
Match: AT5G65270.1 (RAB GTPase homolog A4A )

HSP 1 Score: 310.8 bits (795), Expect = 8.6e-85
Identity = 159/219 (72.60%), Postives = 185/219 (84.47%), Query Frame = 0


Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVIDKKTV 64
           YGD +QKIDYVFKVVLIGDSAVGK+Q+LAR+++DEFSLDSKATIGVEFQT+TLVID K+V
Sbjct: 7   YGDPSQKIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSV 66

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+T+RQ+FDH+ RWLEELR H DKNIVI+
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVII 126

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKS 184
           LIGNK DL   RA+PTEDA+EFAE+E LFF+ETSA  +TNVE+AF T+LTEI+ I++KKS
Sbjct: 127 LIGNKSDLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFNIVNKKS 186

Query: 185 LAAGEEIDIGVNPTHFIGTNI-VVPGQDQDSGRKG--CC 221
           LAA E+ + G NP    G  I +VPG  Q    K   CC
Sbjct: 187 LAASEDQENG-NPGSLAGKKIDIVPGPGQVIPNKSNMCC 224

[Close]

BLAST of Sed0026060 vs. TAIR 10
Match: AT4G39990.1 (RAB GTPase homolog A4B )

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-81
Identity = 149/221 (67.42%), Postives = 182/221 (82.35%), Query Frame = 0


Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVIDKKTV 64
           YG  + K+DYVFKVVLIGDSAVGK+QLLARF++DEFS+DSKATIGVEFQT+TL I++K++
Sbjct: 7   YGGASGKVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSI 66

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR++F+H+ RWLEELR H DKNIVI+
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVII 126

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKS 184
           LIGNK DL   RAVPTEDA+EFAE+E LFF+ETSAL +TNVE +F T++T+IY  ++KK+
Sbjct: 127 LIGNKSDLEDQRAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKN 186

Query: 185 LAAGEEIDIGVNPTHFIGTNIVVPGQDQDSGRK--GCCFRS 224
           LA+  + +   NP    G  I++PG  Q+   K   CC  S
Sbjct: 187 LASEGDSN---NPGSLAGKKILIPGSGQEIPAKTSTCCTSS 224

[Close]

BLAST of Sed0026060 vs. TAIR 10
Match: AT5G59150.1 (RAB GTPase homolog A2D )

HSP 1 Score: 263.1 bits (671), Expect = 2.1e-70
Identity = 134/219 (61.19%), Postives = 162/219 (73.97%), Query Frame = 0


Query: 10  QKIDYVFKVVLIGDSAVGKTQLLARFSKDEFSLDSKATIGVEFQTKTLVIDKKTVKAQIW 69
           Q  DY+FK+VLIGDS VGKT +L+RF+++EF L+SK+TIGVEF T+TL ++ KTVKAQIW
Sbjct: 7   QDYDYLFKIVLIGDSGVGKTNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW 66

Query: 70  DTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHVDKNIVIMLIGNK 129
           DTAGQERYRA+TSAYYRGAVGA+LVYD+TKRQ+FD++ RWL ELR H D NIVIM+ GNK
Sbjct: 67  DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNK 126

Query: 130 CDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGE 189
            DL  LR+V  ED Q  AE E L F+ETSALE+TNVE AF T+L EIY IISKK+LAA E
Sbjct: 127 ADLNHLRSVAEEDGQTLAETEGLSFLETSALEATNVEKAFQTVLAEIYHIISKKALAAQE 186

Query: 190 EIDIGVNPTHFIGTNIVVPGQ--------DQDSGRKGCC 221
                         N  +PGQ           +G++GCC
Sbjct: 187 A----------AAANSAIPGQGTTINVEDTSGAGKRGCC 215

The following BLAST results are available for this feature:

BLAST of Sed0026060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881448.1	5.8e-115	95.52	ras-related protein RABA4d [Benincasa hispida]	[more]
XP_004150166.1	1.3e-114	95.07	ras-related protein RABA4d [Cucumis sativus] >KGN53823.1 hypothetical protein Cs...	[more]
XP_008460801.1	1.7e-114	95.07	PREDICTED: ras-related protein RABA4d [Cucumis melo] >KAA0053214.1 ras-related p...	[more]
XP_022151622.1	8.3e-114	95.07	ras-related protein RABA4d-like [Momordica charantia]	[more]
XP_022925137.1	7.0e-113	93.72	ras-related protein RABA4d [Cucurbita moschata] >XP_023518611.1 ras-related prot...	[more]

BLAST of Sed0026060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LH50	1.5e-102	83.86	Ras-related protein RABA4d OS=Arabidopsis thaliana OX=3702 GN=RABA4D PE=1 SV=1	[more]
Q9FE79	5.8e-94	77.27	Ras-related protein RABA4c OS=Arabidopsis thaliana OX=3702 GN=RABA4C PE=2 SV=1	[more]
P25766	7.6e-94	79.00	Ras-related protein RGP1 OS=Oryza sativa subsp. japonica OX=39947 GN=RGP1 PE=2 S...	[more]
Q40191	2.6e-86	74.31	Ras-related protein Rab11A OS=Lotus japonicus OX=34305 GN=RAB11A PE=2 SV=1	[more]
Q40520	1.1e-84	71.49	Ras-related protein Rab11C OS=Nicotiana tabacum OX=4097 GN=RAB11C PE=2 SV=1	[more]

BLAST of Sed0026060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW90	6.2e-115	95.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152280 PE=4 SV=1	[more]
A0A5A7UD85	8.1e-115	95.07	Ras-related protein RABA4d OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3CDP9	8.1e-115	95.07	ras-related protein RABA4d OS=Cucumis melo OX=3656 GN=LOC103499562 PE=4 SV=1	[more]
A0A6J1DE05	4.0e-114	95.07	ras-related protein RABA4d-like OS=Momordica charantia OX=3673 GN=LOC111019535 P...	[more]
A0A6J1EAZ2	3.4e-113	93.72	ras-related protein RABA4d OS=Cucurbita moschata OX=3662 GN=LOC111432472 PE=4 SV...	[more]

BLAST of Sed0026060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12160.1	1.1e-103	83.86	RAB GTPase homolog A4D	[more]
AT5G47960.1	4.1e-95	77.27	RAB GTPase homolog A4C	[more]
AT5G65270.1	8.6e-85	72.60	RAB GTPase homolog A4A	[more]
AT4G39990.1	3.4e-81	67.42	RAB GTPase homolog A4B	[more]
AT5G59150.1	2.1e-70	61.19	RAB GTPase homolog A2D	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 57..79 score: 53.76 coord: 154..176 score: 43.15 coord: 16..37 score: 50.92 coord: 119..132 score: 52.08 coord: 39..55 score: 34.83
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 16..179 e-value: 3.8E-104 score: 362.0
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 21..215 e-value: 1.4E-6 score: 37.9
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..181 e-value: 0.0031 score: 1.8
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 13..179 e-value: 2.2E-25 score: 100.3
None	No IPR available	PANTHER	PTHR47978:SF27	BNAA05G26830D PROTEIN	coord: 1..222
None	No IPR available	PANTHER	PTHR47978	FAMILY NOT NAMED	coord: 1..222
None	No IPR available	PROSITE	PS51420	RHO	coord: 9..180 score: 9.253969
None	No IPR available	PROSITE	PS51419	RAB	coord: 11..220 score: 35.283276
None	No IPR available	CDD	cd01868	Rab11_like	coord: 13..177 e-value: 4.2354E-123 score: 343.773
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 18..175 e-value: 5.1E-11 score: 21.7
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 17..177 e-value: 3.0E-61 score: 205.7
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 10..223 score: 17.221626
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 15..171 e-value: 3.0E-35 score: 119.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 8..218 e-value: 2.6E-69 score: 234.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026060.1	Sed0026060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080092	regulation of pollen tube growth
cellular_component	GO:0045177	apical part of cell
cellular_component	GO:0070382	exocytic vesicle
cellular_component	GO:0090404	pollen tube tip
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0019900	kinase binding