Sed0026049 (gene) Chayote v1

Overview


Name	Sed0026049
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein of unknown function (DUF 3339)
Location	LG12: 3675810 .. 3676261 (+)
RNA-Seq Expression	Sed0026049
Synteny	Sed0026049

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAATATAAATAAAAGGGGCATAATTGGTAGAACAAATTAATCAAGCAAAGCTCAAAGAAATGGCAGATTGGGGGCCAGTTGTTGTGGCAGTGATTCTGTTCATTCTGCTATCACCAGGGCTTCTGTTTCAGATCCATGGCTCTGATAAGTTCATCCAATTTGGCAACTTTGAAACAAGTCCCACTTCCATTTTCCTTCATTCTCTTGTTTTTTTTGCTCTCTTTTGCATCTTCACTCTTCTTGTTCACATTCATATCTATGTATGATCCTATAATTCATCATATCGTCTTTGATTTCGACCTATGATCGTGTGGATTTGCTTTTCGTTTTGCTCGATTCGTCCTTGTATTCATGTGGATCTTGTAGTCGTTCTTAGAATTTTGTGGTTTGTTTTGTTGATGTAAGACTATGTTCACATTCTTATATAGTAATATGATTTTTTTTTATGA

mRNA sequence

AATTAATATAAATAAAAGGGGCATAATTGGTAGAACAAATTAATCAAGCAAAGCTCAAAGAAATGGCAGATTGGGGGCCAGTTGTTGTGGCAGTGATTCTGTTCATTCTGCTATCACCAGGGCTTCTGTTTCAGATCCATGGCTCTGATAAGTTCATCCAATTTGGCAACTTTGAAACAAGTCCCACTTCCATTTTCCTTCATTCTCTTGTTTTTTTTGCTCTCTTTTGCATCTTCACTCTTCTTGTTCACATTCATATCTATGTATGATCCTATAATTCATCATATCGTCTTTGATTTCGACCTATGATCGTGTGGATTTGCTTTTCGTTTTGCTCGATTCGTCCTTGTATTCATGTGGATCTTGTAGTCGTTCTTAGAATTTTGTGGTTTGTTTTGTTGATGTAAGACTATGTTCACATTCTTATATAGTAATATGATTTTTTTTTATGA

Coding sequence (CDS)

ATGGCAGATTGGGGGCCAGTTGTTGTGGCAGTGATTCTGTTCATTCTGCTATCACCAGGGCTTCTGTTTCAGATCCATGGCTCTGATAAGTTCATCCAATTTGGCAACTTTGAAACAAGTCCCACTTCCATTTTCCTTCATTCTCTTGTTTTTTTTGCTCTCTTTTGCATCTTCACTCTTCTTGTTCACATTCATATCTATGTATGA

Protein sequence

MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTLLVHIHIYV

Homology

[Close]

BLAST of Sed0026049 vs. NCBI nr
Match: XP_022972134.1 (uncharacterized protein LOC111470766 [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 8.4e-25
Identity = 59/68 (86.76%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTL 60
          MADWGPV+VAVILFILLSPGLLFQ+HG+DKFIQFGNFETS TSIFLHSL+FFALFC+FTL
Sbjct: 12 MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 71

Query: 61 LVHIHIYV 69
          ++H+HIYV
Sbjct: 72 VLHLHIYV 79

[Close]

BLAST of Sed0026049 vs. NCBI nr
Match: XP_022932695.1 (uncharacterized protein LOC111439164 [Cucurbita moschata] >XP_023539088.1 uncharacterized protein LOC111799840 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.2 bits (308), Expect = 8.4e-25
Identity = 59/68 (86.76%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTL 60
          MADWGPV+VAVILFILLSPGLLFQ+HG+DKFIQFGNFETS TSIFLHSL+FFALFC+FTL
Sbjct: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60

Query: 61 LVHIHIYV 69
          ++H+HIYV
Sbjct: 61 VLHLHIYV 68

[Close]

BLAST of Sed0026049 vs. NCBI nr
Match: XP_038907108.1 (uncharacterized protein LOC120092931 [Benincasa hispida])

HSP 1 Score: 120.2 bits (300), Expect = 7.1e-24
Identity = 56/68 (82.35%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTL 60
          MADWGPV VAVILFILLSPGLLFQ+HG++KFI+FGNFETS TSIFLHSL+FFALFC+FTL
Sbjct: 1  MADWGPVFVAVILFILLSPGLLFQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60

Query: 61 LVHIHIYV 69
          ++H+HIY+
Sbjct: 61 VIHLHIYI 68

[Close]

BLAST of Sed0026049 vs. NCBI nr
Match: KAG7018460.1 (hypothetical protein SDJN02_20328, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.1 bits (292), Expect = 6.0e-23
Identity = 54/68 (79.41%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTL 60
          MADWGPVVVAV+LFILLSPGL+ Q+HG++KFI+FGNFETS TSIFLHSL+FFALFC+FTL
Sbjct: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60

Query: 61 LVHIHIYV 69
          ++H+HIY+
Sbjct: 61 VLHLHIYI 68

[Close]

BLAST of Sed0026049 vs. NCBI nr
Match: KAG6582034.1 (hypothetical protein SDJN03_22036, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 6.0e-23
Identity = 54/68 (79.41%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTL 60
          MADWGPVVVAV+LFILLSPGL+ Q+HG++KFI+FGNFETS TSIFLHSL+FFALFC+FTL
Sbjct: 18 MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 77

Query: 61 LVHIHIYV 69
          ++H+HIY+
Sbjct: 78 VLHLHIYI 85

[Close]

BLAST of Sed0026049 vs. ExPASy TrEMBL
Match: A0A6J1IAL9 (uncharacterized protein LOC111470766 OS=Cucurbita maxima OX=3661 GN=LOC111470766 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.0e-25
Identity = 59/68 (86.76%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTL 60
          MADWGPV+VAVILFILLSPGLLFQ+HG+DKFIQFGNFETS TSIFLHSL+FFALFC+FTL
Sbjct: 12 MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 71

Query: 61 LVHIHIYV 69
          ++H+HIYV
Sbjct: 72 VLHLHIYV 79

[Close]

BLAST of Sed0026049 vs. ExPASy TrEMBL
Match: A0A6J1F2V4 (uncharacterized protein LOC111439164 OS=Cucurbita moschata OX=3662 GN=LOC111439164 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.0e-25
Identity = 59/68 (86.76%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTL 60
          MADWGPV+VAVILFILLSPGLLFQ+HG+DKFIQFGNFETS TSIFLHSL+FFALFC+FTL
Sbjct: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60

Query: 61 LVHIHIYV 69
          ++H+HIYV
Sbjct: 61 VLHLHIYV 68

[Close]

BLAST of Sed0026049 vs. ExPASy TrEMBL
Match: A0A6J1CVS1 (uncharacterized protein LOC111014687 OS=Momordica charantia OX=3673 GN=LOC111014687 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.8e-18
Identity = 46/68 (67.65%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTL 60
          MADWGPV VAV+LF+LLSPGLLFQ+ G  +F++FGNF TS  SIF+HSL+FFAL C+FT 
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHQFVEFGNFHTSGASIFIHSLIFFALLCLFTF 60

Query: 61 LVHIHIYV 69
          +V +HIY+
Sbjct: 61 VVQLHIYI 68

[Close]

BLAST of Sed0026049 vs. ExPASy TrEMBL
Match: A0A6J1I7P7 (uncharacterized protein LOC111470767 OS=Cucurbita maxima OX=3661 GN=LOC111470767 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.3e-18
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTL 60
          MADWGPV VAV+LF+LLSPGLLFQ+ G   FIQFGNF+TS  SIF+HSL+FFAL C+FT 
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTF 60

Query: 61 LVHIHIYV 69
          ++ +HIY+
Sbjct: 61 VLQLHIYL 68

[Close]

BLAST of Sed0026049 vs. ExPASy TrEMBL
Match: A0A6J1EXQ9 (uncharacterized protein LOC111439163 OS=Cucurbita moschata OX=3662 GN=LOC111439163 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.3e-18
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTL 60
          MADWGPV VAV+LF+LLSPGLLFQ+ G   FIQFGNF+TS  SIF+HSL+FFAL C+FT 
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTF 60

Query: 61 LVHIHIYV 69
          ++ +HIY+
Sbjct: 61 VLQLHIYL 68

[Close]

BLAST of Sed0026049 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 89.7 bits (221), Expect = 9.5e-19
Identity = 39/68 (57.35%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTL 60
          M+DWGPV+V VILF++L+PGLLFQ+ G  K+++FGNF+TS  S+ +HSL++F+L C+F L
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 LVHIHIYV 69
           + IHIY+
Sbjct: 61 ALKIHIYI 68

[Close]

BLAST of Sed0026049 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-17
Identity = 40/67 (59.70%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1  MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTL 60
          MADWGPVVVAVILF+LL+PGLLFQI    + ++FGN +TS  SI +H+++FF L  IFT+
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 LVHIHIY 68
           + +HIY
Sbjct: 61 AIRLHIY 67

[Close]

BLAST of Sed0026049 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 84.7 bits (208), Expect = 3.1e-17
Identity = 38/67 (56.72%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 1  MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTL 60
          MADWGPV++AVILF++LSPGLLFQI    + ++FGN +TS  SI +H+++FF L  IFT+
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 LVHIHIY 68
           +++HIY
Sbjct: 61 AINVHIY 67

[Close]

BLAST of Sed0026049 vs. TAIR 10
Match: AT3G01950.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-14
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 3  DWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTLLV 62
          DWGPV+++VI FI+LSPG+LFQ+ G  K ++FG F+TS  SI +H+L+FFA   I  + +
Sbjct: 4  DWGPVLMSVIFFIVLSPGVLFQLPGKSKAVEFGGFQTSGPSIVIHTLLFFAFITISLIAL 63

Query: 63 HIHIY 68
          HIHIY
Sbjct: 64 HIHIY 68

[Close]

BLAST of Sed0026049 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-14
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 1  MADWGPVVVAVILFILLSPGLLFQIHGSDKFIQFGNFETSPTSIFLHSLVFFALFCIFTL 60
          M DWGPV VAV LF+LL+PGLL Q+ G  + ++FG F+TS  S+ +H+L++F L CI  L
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 LVHIHI 67
           + IHI
Sbjct: 61 ALQIHI 66

The following BLAST results are available for this feature:

BLAST of Sed0026049 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022972134.1	8.4e-25	86.76	uncharacterized protein LOC111470766 [Cucurbita maxima]	[more]
XP_022932695.1	8.4e-25	86.76	uncharacterized protein LOC111439164 [Cucurbita moschata] >XP_023539088.1 unchar...	[more]
XP_038907108.1	7.1e-24	82.35	uncharacterized protein LOC120092931 [Benincasa hispida]	[more]
KAG7018460.1	6.0e-23	79.41	hypothetical protein SDJN02_20328, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6582034.1	6.0e-23	79.41	hypothetical protein SDJN03_22036, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0026049 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0026049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IAL9	4.0e-25	86.76	uncharacterized protein LOC111470766 OS=Cucurbita maxima OX=3661 GN=LOC111470766...	[more]
A0A6J1F2V4	4.0e-25	86.76	uncharacterized protein LOC111439164 OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]
A0A6J1CVS1	4.8e-18	67.65	uncharacterized protein LOC111014687 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1I7P7	6.3e-18	69.12	uncharacterized protein LOC111470767 OS=Cucurbita maxima OX=3661 GN=LOC111470767...	[more]
A0A6J1EXQ9	6.3e-18	69.12	uncharacterized protein LOC111439163 OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]

BLAST of Sed0026049 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08391.1	9.5e-19	57.35	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	2.4e-17	59.70	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	3.1e-17	56.72	Protein of unknown function (DUF 3339)	[more]
AT3G01950.1	1.1e-14	55.38	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	2.4e-14	53.03	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 e-value: 1.4E-29 score: 102.1
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..68
None	No IPR available	PANTHER	PTHR33128:SF55	PROTEIN, PUTATIVE (DUF 3339)-RELATED	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026049.1	Sed0026049.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane