Sed0025992 (gene) Chayote v1

Overview


Name	Sed0025992
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Glycine-rich RNA-binding protein 4
Location	LG08: 34655564 .. 34658853 (+)
RNA-Seq Expression	Sed0025992
Synteny	Sed0025992

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGGAATTCTATTCTCCGCCGCTCCAATTCCGTTCTTTCACTTTCAGGCAACAATTCCCAACAAAATCCACTCCACCGAGACGCATATGCGAATCCAAAGCATTCAATCCCAATCGGCTTACACTACTGCGCCACTTCATTTCTTCTCAGTGAAGAAGACTCGTTCAATTTCAGAGTCGCCGCTCTTTCCGGTGACCTGCGTCTCTTCTTCACCTTCGCCTTCTCCCAGAAGAAACTCGCCGTCAACCAGGCTATACATCAGCGGTTGATTTCCTCTCTCATTTGTGTATTTTGCACTTCATTTAGCCCTAATTTCGCTATCAATGTCTGTATAGAAGGTTTGGATCTATATCGAATGGTTCTAACTTCGCTCGTGCAGGTCTTTCTTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCGAACTCGTGGAAGGTCGCAAACTTCTCTACTTTTGTATTATGAACGTTCTGTCTTGTCAATAAACTTCAGTTGTTGATATTTGGTGCTGTTTGTTATCAATTTTTGTAAGTTTCAGTCAATTTGGTGATGGATAAAGTGGCTAATAGACCAAGAGGATTTGCTTTCCTTCGTTATGGTACTGAAGAGGAATCTCAAAAGGCTATAGAAGGAATGCACGGAAAGGTAATATACCGATCTTCTCCAAATGTTTTCAGATTTCGTAATGCATATTGAATTTGAAGTTCATTTTCTTGTGTTCCATGGATATCTGTTTGTTTTTAGATTCTTAATCGCTCAATTTAGCATGTTGATGTTTTTCACTAGCCTATAGCCAGAGCATTATATTATAGTTTCCACAATTTTACTGAGTTTGCATCCTATTTGAGATGGGCAGTTTTAATGCTATTTTCTTATTGACTGTGGTTTTGTATTGCATGTGAGCACTCTTCTAGAAGTATACTGTATTCCTCACTTTGATGTCTCTAGCCTTAGACAAAGCTAATATTATCATGTAATTGAGAAAAAACTGAAAAATACAACTCACTAAAAAAATTGTGCCCTCGTCCTAAGGTGTGGCATTGTAGTTGAAGTTTTGGGTTTTGAAAGTGTGCTCTCCTCAAGGTCTTTGGTTCAAGATTCACCTGTAACATTAGTTTGTAGACACCTGCCGTATTTCCATTCCTTCTATGTCTCCCTGTGCCTAGCCTAGGGACGAGTGTGTTTACCCCGGGTATAGGGGAGTGAAACTCTGATTTCTCAACTTAAAAAAAAAAAAAAATTGCACCCTCACGAAAGGGAACCCCCTATAGAAAAGGACTCCAATCAAGCAAAACAAGATCTAAAAAGCAATGGCCAAAAGCCTTAGAAATGAAGGTCAAAAAGCAACATTGAACCTAACAAGGGACCAAGCATCAGACTAACTCCTCTCCACTCCCCTAAAGGTTCTGTTGTTCCTTTCCCCCCACTAGCCCACAACAAGCACAACCCATGCTTGTCCCACAATAAACACTCCTCCACAAATTTGGCAAGAGAATAGAAATCTAGATTGGAGGAGTTGGCTGTAGTAGATTTAAGGTAGCATTAAAAGAATAGAAGGTGGCATTCGTCGAGTTACCTAATCTTGCTTCCGTTCATCCCGTTATTTCTAATCTTGCTTCCTATCCTAGCTGTGAAACATTGGAATTGTTTTACCTTCAATGACAAAATGAATAGTTGTGGTTGAACAAGATAGCACAACTGCCTCAGCGGATAAGTTTGTTGTTAATACAGTTGAATGCTGATGCAAGCATTGGTTATACACGTGTATATATCGGCAGGTTGATTACTTGTAATGCTCTGAGATTATGATGTGTAAGTCTCTGGTAACTTCCATCCACGGTTCTGAATGTTGTAAAACAGAAATTCGATTGCTAGAGCAGGTTCAATTAGGACAGGAAGTAAGTCAAGCTTACCAGCAGGTACTAACTAATTTACACCTTTTTCCTTTCCTTCCCAAAGCTCCTCTATTTTAGGATCATTTACCTAAGAAACTAACTAGTTCTAACTAAATTTGACTAAAGGTGAGTTTCAGTGAAAGCAATTAGTTGAAAAATATATTTAGAAAATTAAAAGTACTTTCCATCCTTATAAAATTAGTTTTGAACTCGTCTTTGCTATATGTTAAGATACCAATAATCTTAACAATACACCATAAAACATTTTTTTTTTTTTGGAATAATACACCATAGAACATTAAATACACCGTAACACTATATTAAGAATGAAAGGTTGCAATACCATACCCTTAATCTTTCGAGAGGGCCAAGTCTCTCCCAAATTCCCAATAGCCTTTCGAGAGGGCTATGTCTCTCCACCAAAGTCTTCTACAAGACAATGCCAAAATATGCATATCTCACTAAGAACCCTAGTCTATTTATACTAAAACCTTAAAGTACTAATTACTGTTCTATCTTTACATATATTATACTAATATTCCCAGCCTACCCTTAGTACTTTATCATTATACCACAACAATTACATCTCCCCCAGCTCACTGCCAAAGGCGGTCACTGTTCCCTTTGCCCTTCATTGTATATGTAAACCATGTGAGAGGTTTAGGAAGCTTATCAAAGACTGCTTGAACCAAAATGTCACAAGTTTCTAACAATTCCGTATAATTTAATATGGATTTTGTAGTAAAATATGATGGTTAGAATGTCCCGGTGTCCTAATTGTTATCTTGTCTTGTCATAAAACAACCTAAACCTGTTATGAATGGATTTCTTTCTATTAAACTCAAATTGTTAGTGAACAAATTGAGTTCAAGTCTCAGAGTTGACCGAATTACTGTTATGAGGAACTCTTTAGCCTCAAAGGTTCTTCCAATTTATAGTGACAAGTTCTATGTTTGTTAAATTTTATTATCAAGGAACTTATTCTCAGATTTATTGATGGATATACCCTCCCCACCTCTTCTCGTTGGCAAATATGAATTATAGATACTCTTATCTTTTATTCCACGGATTAAATTCCAATGCCTCTTATCCAAAAATTCATTCCAATTCCACCTGCAAGTGAAAAAGGCTATTTTAAAAATCAAGCTCATAGCTAGAAGGGTCTTATCTGTGCCATCTGATGATGGTTGTTTCTTTTTTCTTATCTTTGATGATCTTGTTTTCTTAAATTTATTGGCACCTGTTTCAAGCACAGTAACTTCATGAGCTAATAGGGGCAACTCTGGTTTAGTTTCTGGATGGCAGGGTAATCTTTGTGGAAGTTGCCAAGTCCAGATGGGAGCTTCGCCAAGGCCTAAAAGAAAACTCTACCTAA

mRNA sequence

ATGGCCGCCGGAATTCTATTCTCCGCCGCTCCAATTCCGTTCTTTCACTTTCAGGCAACAATTCCCAACAAAATCCACTCCACCGAGACGCATATGCGAATCCAAAGCATTCAATCCCAATCGGCTTACACTACTGCGCCACTTCATTTCTTCTCAGTGAAGAAGACTCGTTCAATTTCAGAGTCGCCGCTCTTTCCGGTGACCTGCGTCTCTTCTTCACCTTCGCCTTCTCCCAGAAGAAACTCGCCGTCAACCAGGCTATACATCAGCGGTCTTTCTTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCGAACTCGTGGAAGTCAATTTGGTGATGGATAAAGTGGCTAATAGACCAAGAGGATTTGCTTTCCTTCGTTATGGTACTGAAGAGGAATCTCAAAAGGCTATAGAAGGAATGCACGGAAAGTTTCTGGATGGCAGGGTAATCTTTGTGGAAGTTGCCAAGTCCAGATGGGAGCTTCGCCAAGGCCTAAAAGAAAACTCTACCTAA

Coding sequence (CDS)

ATGGCCGCCGGAATTCTATTCTCCGCCGCTCCAATTCCGTTCTTTCACTTTCAGGCAACAATTCCCAACAAAATCCACTCCACCGAGACGCATATGCGAATCCAAAGCATTCAATCCCAATCGGCTTACACTACTGCGCCACTTCATTTCTTCTCAGTGAAGAAGACTCGTTCAATTTCAGAGTCGCCGCTCTTTCCGGTGACCTGCGTCTCTTCTTCACCTTCGCCTTCTCCCAGAAGAAACTCGCCGTCAACCAGGCTATACATCAGCGGTCTTTCTTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCGAACTCGTGGAAGTCAATTTGGTGATGGATAAAGTGGCTAATAGACCAAGAGGATTTGCTTTCCTTCGTTATGGTACTGAAGAGGAATCTCAAAAGGCTATAGAAGGAATGCACGGAAAGTTTCTGGATGGCAGGGTAATCTTTGTGGAAGTTGCCAAGTCCAGATGGGAGCTTCGCCAAGGCCTAAAAGAAAACTCTACCTAA

Protein sequence

MAAGILFSAAPIPFFHFQATIPNKIHSTETHMRIQSIQSQSAYTTAPLHFFSVKKTRSISESPLFPVTCVSSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDKVANRPRGFAFLRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENST

Homology

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BLAST of Sed0025992 vs. NCBI nr
Match: XP_022998114.1 (organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 292.0 bits (746), Expect = 3.5e-75
Identity = 150/176 (85.23%), Postives = 159/176 (90.34%), Query Frame = 0


Query: 1   MAAGILFSAAPIPFFHFQATIPNKIHSTETHMRIQSIQSQSAYTTAPLHFFSVKKTRSIS 60
           M AG+LFSA PIPFF  Q+T  N I ST T MRIQSIQS+ AY+T PL FFSVKKTRSIS
Sbjct: 1   MTAGLLFSAVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 60

Query: 61  ESPLFPVTCVSSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDK 120
           +SPLF VTCVSSSPSPSPRR SPSTRLY+SGLSFRTTEESLRNAF SFG+LVEVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 121 VANRPRGFAFLRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENST 177
           VANRPRGFAFLRY TEEESQKAIEGMHGKFLDGRVIFVEVAKS+WELRQGLKENS+
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 176

[Close]

BLAST of Sed0025992 vs. NCBI nr
Match: XP_022949592.1 (organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 288.1 bits (736), Expect = 5.1e-74
Identity = 149/176 (84.66%), Postives = 158/176 (89.77%), Query Frame = 0


Query: 1   MAAGILFSAAPIPFFHFQATIPNKIHSTETHMRIQSIQSQSAYTTAPLHFFSVKKTRSIS 60
           M AG+LFSAAPIPFF  Q+   N I ST T MRIQSIQS+ AY+T P  FFSVKKTRSIS
Sbjct: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPPPFFSVKKTRSIS 88

Query: 61  ESPLFPVTCVSSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDK 120
           +SPLF VTCVSSSPSPSPRR SPSTRLY+SGLSFRTTEESLRNAF SFG+LVEVNLVMDK
Sbjct: 89  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148

Query: 121 VANRPRGFAFLRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENST 177
           VANRPRGFAFLRY TEEESQKAIEGMHGKFLDGRVIFVEVAKS+WELRQGLKENS+
Sbjct: 149 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 204

[Close]

BLAST of Sed0025992 vs. NCBI nr
Match: KAG6607420.1 (Organelle RRM domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037088.1 Organelle RRM domain-containing protein 6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.7 bits (735), Expect = 6.6e-74
Identity = 149/176 (84.66%), Postives = 158/176 (89.77%), Query Frame = 0


Query: 1   MAAGILFSAAPIPFFHFQATIPNKIHSTETHMRIQSIQSQSAYTTAPLHFFSVKKTRSIS 60
           M AG+LFSAAPIPFF  Q+   N I ST T MRIQSIQS+ AY+T PL FFSVKKTRSIS
Sbjct: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 88

Query: 61  ESPLFPVTCVSSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDK 120
           +SPL  VTCVSSSPSPSPRR SPSTRLY+SGLSFRTTEESLRNAF SFG+LVEVNLVMDK
Sbjct: 89  DSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148

Query: 121 VANRPRGFAFLRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENST 177
           VANRPRGFAFLRY TEEESQKAIEGMHGKFLDGRVIFVEVAKS+WELRQGLKENS+
Sbjct: 149 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 204

[Close]

BLAST of Sed0025992 vs. NCBI nr
Match: XP_023525166.1 (organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.8 bits (730), Expect = 2.5e-73
Identity = 147/176 (83.52%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 1   MAAGILFSAAPIPFFHFQATIPNKIHSTETHMRIQSIQSQSAYTTAPLHFFSVKKTRSIS 60
           M AG+LFSA P PFF  Q+   N I ST T MRIQSIQS+  Y+T PL FFSVKKTRSIS
Sbjct: 1   MTAGLLFSAVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRSIS 60

Query: 61  ESPLFPVTCVSSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDK 120
           +SPLF VTCVSSSPSPSPRR SPSTRLY+SGLSFRTTEESLRNAF SFG+LVEVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 121 VANRPRGFAFLRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENST 177
           VANRPRGFAFLRY TEEESQKAIEGMHGKFLDGRVIFVEVAKS+WELRQGLKENS+
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 176

[Close]

BLAST of Sed0025992 vs. NCBI nr
Match: XP_038895072.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 273.1 bits (697), Expect = 1.7e-69
Identity = 143/178 (80.34%), Postives = 155/178 (87.08%), Query Frame = 0


Query: 1   MAAGILF--SAAPIPFFHFQATIPNKIHSTETHMRIQSIQSQSAYTTAPLHFFSVKKTRS 60
           M AG+ F  +AAP PFF FQ T  N I STETH RI SI+SQ AY++ PL FFSV+KT S
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 61  ISESPLFPVTCVSSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGELVEVNLVM 120
           IS+SPLF + C SSSPSPSPRR +PSTRLY+SGLSFRTTEESLRNAFKSFG+LVEVNLVM
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENST 177
           DKVANRPRGFAFLRY TEEESQKAIEGMHGKFLDGRVIFVEVAKSR ELRQGLKENS+
Sbjct: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 178

[Close]

BLAST of Sed0025992 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.8e-32
Identity = 68/116 (58.62%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 52  SVKKTRSISESPLFPVTCVSSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGEL 111
           S ++ R I    +       SS SP    + P T+LY+SGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 112 VEVNLVMDKVANRPRGFAFLRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWEL 168
           + +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGKFLDGRVIFVE AK+R ++
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of Sed0025992 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 71  SSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDKVANRPRGFAF 130
           + S +P+  +  PST L++SGLS RTT E LR AF  FGE+ +  +V D+V+   +GF F
Sbjct: 42  AESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGF 101

Query: 131 LRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENS 176
           +RY T E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 102 VRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of Sed0025992 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.0e-18
Identity = 41/79 (51.90%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 86  RLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDKVANRPRGFAFLRYGTEEESQKAIEG 145
           +L+I+GLSF T+E++LR AF+ FGELVEV ++MDK++ R +G+AFL Y TEE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 146 MHGKFLDGRVIFVEVAKSR 165
           M+GK ++G +I V+VAK++
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of Sed0025992 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.7e-17
Identity = 39/79 (49.37%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 86  RLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDKVANRPRGFAFLRYGTEEESQKAIEG 145
           RL+++GLSF T+E++LR AF+ FGELVEV ++MD+++ R +G+AF+ Y TEE    A++ 
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 359

Query: 146 MHGKFLDGRVIFVEVAKSR 165
           M+G+ ++G +I V+VAK+R
Sbjct: 360 MNGQIINGWMIVVDVAKTR 378

[Close]

BLAST of Sed0025992 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.5e-17
Identity = 44/99 (44.44%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 71  SSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDKVANRPRGFAF 130
           S   S + +    + RL+++GLSF T+E++LR AF+ FGELVEV ++MDK++ R +G+AF
Sbjct: 281 SFKSSEATQAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAF 340

Query: 131 LRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQ 170
           + Y TEE    A++ M+G+ ++G +I V+VAK R   RQ
Sbjct: 341 IEYTTEEAGGAALKAMNGQIINGWMIVVDVAKHRSRDRQ 379

[Close]

BLAST of Sed0025992 vs. ExPASy TrEMBL
Match: A0A6J1KDG6 (organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492861 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.7e-75
Identity = 150/176 (85.23%), Postives = 159/176 (90.34%), Query Frame = 0


Query: 1   MAAGILFSAAPIPFFHFQATIPNKIHSTETHMRIQSIQSQSAYTTAPLHFFSVKKTRSIS 60
           M AG+LFSA PIPFF  Q+T  N I ST T MRIQSIQS+ AY+T PL FFSVKKTRSIS
Sbjct: 1   MTAGLLFSAVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 60

Query: 61  ESPLFPVTCVSSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDK 120
           +SPLF VTCVSSSPSPSPRR SPSTRLY+SGLSFRTTEESLRNAF SFG+LVEVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 121 VANRPRGFAFLRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENST 177
           VANRPRGFAFLRY TEEESQKAIEGMHGKFLDGRVIFVEVAKS+WELRQGLKENS+
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 176

[Close]

BLAST of Sed0025992 vs. ExPASy TrEMBL
Match: A0A6J1GCJ4 (organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452900 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.5e-74
Identity = 149/176 (84.66%), Postives = 158/176 (89.77%), Query Frame = 0


Query: 1   MAAGILFSAAPIPFFHFQATIPNKIHSTETHMRIQSIQSQSAYTTAPLHFFSVKKTRSIS 60
           M AG+LFSAAPIPFF  Q+   N I ST T MRIQSIQS+ AY+T P  FFSVKKTRSIS
Sbjct: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPPPFFSVKKTRSIS 88

Query: 61  ESPLFPVTCVSSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDK 120
           +SPLF VTCVSSSPSPSPRR SPSTRLY+SGLSFRTTEESLRNAF SFG+LVEVNLVMDK
Sbjct: 89  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148

Query: 121 VANRPRGFAFLRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENST 177
           VANRPRGFAFLRY TEEESQKAIEGMHGKFLDGRVIFVEVAKS+WELRQGLKENS+
Sbjct: 149 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 204

[Close]

BLAST of Sed0025992 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.5e-66
Identity = 139/178 (78.09%), Postives = 152/178 (85.39%), Query Frame = 0


Query: 1   MAAGILF--SAAPIPFFHFQATIPNKIHSTETHMRIQSIQSQSAYTTAPLHFFSVKKTRS 60
           M AG+ F  +AAP PFF  Q T  N I STETHMR QS QS+ AY++ PL FFS +KT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFPVTCVSSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGELVEVNLVM 120
           ISESPLF V CVSS  SPSPRR SPSTRLY+SGLSFRTTEESLRNAFKSFG+LVEVNLVM
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENST 177
           D+VANRPRGFAFLRY +EEESQKAIEGMHGKFLDGRVIFVE+AK R ELRQGLKENS+
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of Sed0025992 vs. ExPASy TrEMBL
Match: A0A0A0LQB8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 6.7e-64
Identity = 137/180 (76.11%), Postives = 154/180 (85.56%), Query Frame = 0


Query: 1   MAAGILF--SAAPIPFFHFQATIPNKIHSTETHMRIQSIQSQSAYTTAPLHFFSVKKTRS 60
           M AG+ F  +AAP PFF  Q T  + I STET MRI+SIQS+ AY++ PL FFS +KT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFPVTCVSSSP--SPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGELVEVNL 120
           IS+S LF V CVSSSP  S SPRR +PSTRLYISGLSFRTTEESLRNAFKSFG+LVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDKVANRPRGFAFLRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENST 177
           VMD++ANRPRGFAFLRY +EEESQKAIEGMHGKFLDGRVIFVEVAKSR ELRQGL+ENS+
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of Sed0025992 vs. ExPASy TrEMBL
Match: A0A6J1C991 (organelle RRM domain-containing protein 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008629 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.3e-63
Identity = 133/176 (75.57%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 1   MAAGILFSAAPIPFFHFQATIPNKIHSTETHMRIQSIQSQSAYTTAPLHFFSVKKTRSIS 60
           M AG+L +AAP P   FQ T+ N I  TE H+RIQSI  Q  Y T PL FF VK  ++  
Sbjct: 1   MTAGLLSAAAPRPL--FQTTLNNHIRRTEMHIRIQSIPYQLGYGT-PLPFFYVKVKKTHP 60

Query: 61  ESPLFPVTCVSSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDK 120
           ESPLF V CVSS+PSPS RR++PSTRLY+SGLSFRTTEESLRNAFKSFG+L+EVNLVMDK
Sbjct: 61  ESPLFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDK 120

Query: 121 VANRPRGFAFLRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENST 177
           VANRPRGFAFLRY TEEESQKAI+GMHGKFLDGRVIFVEVAKSRWELRQG KENS+
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173

[Close]

BLAST of Sed0025992 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-33
Identity = 68/116 (58.62%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 52  SVKKTRSISESPLFPVTCVSSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGEL 111
           S ++ R I    +       SS SP    + P T+LY+SGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 112 VEVNLVMDKVANRPRGFAFLRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWEL 168
           + +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGKFLDGRVIFVE AK+R ++
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of Sed0025992 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 97.8 bits (242), Expect = 9.1e-21
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 71  SSSPSPSPRRNSPSTRLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDKVANRPRGFAF 130
           + S +P+  +  PST L++SGLS RTT E LR AF  FGE+ +  +V D+V+   +GF F
Sbjct: 42  AESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGF 101

Query: 131 LRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENS 176
           +RY T E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 102 VRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of Sed0025992 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-19
Identity = 40/91 (43.96%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 84  STRLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDKVANRPRGFAFLRYGTEEESQKAI 143
           S +L++S LS  TT++SLR  F  FG++ E  L+ D    RP+GF F+ + +E++++KA+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 144 EGMHGKFLDGRVIFVEVAKSRWELRQGLKEN 175
           + + GK +DGR+IFVEVAK+  E+R G+  N
Sbjct: 66  KSLDGKIVDGRLIFVEVAKNAEEVRAGINSN 96

[Close]

BLAST of Sed0025992 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 92.0 bits (227), Expect = 5.0e-19
Identity = 41/79 (51.90%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 86  RLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDKVANRPRGFAFLRYGTEEESQKAIEG 145
           +L+I+GLSF T+E++LR AF+ FGELVEV ++MDK++ R +G+AFL Y TEE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 146 MHGKFLDGRVIFVEVAKSR 165
           M+GK ++G +I V+VAK++
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of Sed0025992 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-17
Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 72  SSPSPSPRRNS--PSTRLYISGLSFRTTEESLRNAFKSFGELVEVNLVMDKVANRPRGFA 131
           SSPS   RR S   S RL++SGLS  TT E L++AF SFG+LV+  ++ D+ + R +GF 
Sbjct: 19  SSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFG 78

Query: 132 FLRYGTEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKE 174
           F+ Y T E+++KA   M+ KFLDG VIFV+ A+ R E R+ L++
Sbjct: 79  FVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPR-EPRRPLQQ 121

The following BLAST results are available for this feature:

BLAST of Sed0025992 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022998114.1	3.5e-75	85.23	organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita maxima]	[more]
XP_022949592.1	5.1e-74	84.66	organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata]	[more]
KAG6607420.1	6.6e-74	84.66	Organelle RRM domain-containing protein 6, chloroplastic, partial [Cucurbita arg...	[more]
XP_023525166.1	2.5e-73	83.52	organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita pepo su...	[more]
XP_038895072.1	1.7e-69	80.34	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa h...	[more]

BLAST of Sed0025992 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX45	3.8e-32	58.62	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FIU6	1.3e-19	46.67	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q8L440	7.0e-18	51.90	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
C0HFE5	2.7e-17	49.37	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]
Q6YWP9	3.5e-17	44.44	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]

BLAST of Sed0025992 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KDG6	1.7e-75	85.23	organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxim...	[more]
A0A6J1GCJ4	2.5e-74	84.66	organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata O...	[more]
A0A1S3AYF6	2.5e-66	78.09	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
A0A0A0LQB8	6.7e-64	76.11	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV...	[more]
A0A6J1C991	3.3e-63	75.57	organelle RRM domain-containing protein 6, chloroplastic OS=Momordica charantia ...	[more]

BLAST of Sed0025992 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73530.1	2.7e-33	58.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	9.1e-21	46.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	2.9e-19	43.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	5.0e-19	51.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	2.7e-17	48.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 86..159 e-value: 4.8E-4 score: 29.4
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 86..159 e-value: 2.3E-25 score: 100.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 87..156 e-value: 6.7E-18 score: 64.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 85..163 score: 19.501883
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 50..169 e-value: 2.0E-29 score: 104.6
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 3..174
None	No IPR available	PANTHER	PTHR15241:SF328	RNA-BINDING PROTEIN 1	coord: 3..174
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 66..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025992.1	Sed0025992.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900871	chloroplast mRNA modification
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding