Sed0025923 (gene) Chayote v1

Overview


Name	Sed0025923
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	LG14: 6500049 .. 6512109 (-)
RNA-Seq Expression	Sed0025923
Synteny	Sed0025923

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGCCACCGCCGCCGCGTCCTCGTTCATCGCCACCCGCCTCGCCGACGCACGGCGGGGGTCCGGCAAAGGCAAAGTAGAAGCCCGGTTCTCGTTCGGCAAGAAGAAAGCCGGTCCGGCGAAGAAAAAGGCGTCCTCGAAGAGGGTTCCGGACCGGCCGCTGTGGTACCCGGGAGCGAAGGCGCCGGAGTGGCTGGACGGGAGCCTGGTCGGGGACTACGGGTTCGACCCGTTCGGGCTGGGTAAACCGGCGGAGTATTTGCAGTACGAATTGGACTCGCTGGACCAGAACTTGGCGAAGAACTCGGCGGGCGATCTAATCGGGACGAGATTTGAGAACTCGGAGGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTGTTTGGACTGCAGAGATTTCGTGAGTGTGAACTCATTCATGGACGGTGGGCCATGTTGGCCACTCTCGGCGCTCTCTCGGTTGAGTGGCTCACTGGCATCACTTGGCAAGACGCTGGAAAAGTGAGCTCTATTTTCTTTTCTTTTTTTTATTTAATTACTCATGTTCAAACAAGATTTTGACTATAACTCACTATACAAAAACTAAATTCAAACGAGTTTTTGACACAAATTTCAATTTTTAGCTACTCAATCTAACTTCTTAACCTAAAAACTACTTAAATATGTCAAACAAACATCGTAGATTCTTCTCGCATAAGATCTTAATATCAATTTTCAGAATGAAACCAATATGGATAGCCATAAATTTAATTTTTAATAAACCATTTTCACCTTTTAGTATTTTTCCTATTATTATTATTATTATCAATAGAATATATGTAGCAAGTGATTTAAAATCATGGTGAAGTAAATTTAAAGGATTAAGAGCCATTAATTTTTGTCTTTCTAATAATATTTAATATAAAATAAGTGATTGTTTCATAAAAATAGTGTACCTATGGGAATGCATATATTTTATATGGATAATATTGTAGGTAGAATTAGTGGAAGGTTCATCATACCTGGGTCAGCCGCTGCCATTCACCGTAACGACATTGATCTGGATCGAAGTGCTTGTGATTGGATACATCGAATTCCAAAGAAACGCGGAGTTGGAGCCAGAGAAGAGGTTGTACCCAGGCGGGAAGTTCTTCGACCCATTGGGCCTGGCGGAGGACCCGGAGAAGAAAGTCGTCCTACAGTTGGCTGAGATCAAGCACGCTCGCCTCGCCATGGTTGCCTTTCTCGGCTTTGCGGTCCAGGCCGCCGTCACCGGCAAAGGCCCGCTCAACAACTGGGCCACCCATTTGAGCGACCCGCTCCACACCACCATCATCGACTCCTTCTCTTCTTAGTTTTAAACCCTCTCGATCTACGTGTTTGTAAAAACTTCATTTTCAGGTTTTTTTTATATATATATATGTTAATTATAAGCCTTTCGACAACATCGAGTTGTTATTTATGTTTTGGATGGTGGTTCATTTATAAGACTTTATCTAACAAGATTAATAGTTTAATTAATATAATTGTGTATCGCCAACAAAAGAAATAGCTTAGCCGTATCTGTCTACACCTCATGACCAAGAGGTCACAGAGAATCAGTATTTATCCCCTCCCCAAATATGTATTTAAAAAAAATAATTGCAATTTTGTTATTTTCACCTACTTGATTTCTTGTTCAATTGTCATATGCGATCGCCGGCGGCAGTCATCGCGTTCGTATTTCTCAGTTACATTCTTCTCTGGAATTTCATTGTACAGTCAATCATCCGATCTTTATCTTCTTTTTACATTGATTTCCTATAAATTTATTTTTGGAAAAGAGACAATTTCATGAATACATGAAATTACAATAAAACATAATAGACAACTAGAGATCAAATAAGTGATCTACAGTGGTTAAGTAGTGTATCAAAACTAGAAGCAGTAAATAGAGAATTAAGTTTGCACCAGGATATAACTTGTAGAGTAATTGTGTCAAAAAAACAAGAGAAAGATGAGTATTTGTCTTGAAAGATCCTCTTGTTCCTCTCCAACCAAATGTTCCAGCAAAAAGACGAAATGCTCCCATAGTAGTTTCTTTTCCTTCTTGAAAGGATGACCGAGTAAGGCAAATTGAAGCAATGGGTAAGGTTCAGAATTGAGAGTAATAGGCCACCTGAAGGCACTTCTAATATAATTCCAAAACAATGTGGCATAAGTACAATTACTAATTAGATGTGAGCTAGATTCTGATGCCTTTCGACAAATAGAGCACCATTGAGGGGAGATGGATTTATTGACAAGTCTCATTTGTAATTTATCATGCGTTAAAATAGCCCCGTGTGATAATTCCCATAAGAAAATTTTAATTTTCTTAGGGTATTTCCTTTTCCAAATTGCATCATACAAGGAATAAGGTTGTTCCATTGGGTTAAGAGACATGAACTTAACCATAGATCGGACCGAAAACCGCCTCGATGGCTCCTCCCTCCATAAAGCAATGTTGTCACCTTCCTCGAAATGCACGGCATTAAGCATGTCCGATAAAGTACTAAATTCTTCTATTTCTTCCTCCTTCAATTTTCTTCTAAACCCAAGGTTCAAAGTCTGTTGTTCATTGTCCAACAACAAATTAATCACCCTTCTTTTTTGCTTGAAAAATGAGTATAGCAGGGAAAAGTTGGGCCAATGGAGACTCGTGGATCCATACATCTTCCCATAACAGGATATCCCTACCATTCTTCATAATAAAATATATTCTATCAAGGACCGATTGCATCAAAGGAATGATGGATCTCCATGGACCCTTGGATGATTTTCGAGTCATTAATCCTGGCATGTAAATGCTATCTGACTGTCCAAATTTTGCATCAATCAATTTTTTCCAAAGAGCACCTCTTTCAGCCCCATATCTCCAAATCCATTTCGATAACAGAGCCTCGTTCTTGGTCTTCATATTGGTTATTCCGAGTCCACCTTATTCGAATGAAAGAGAAATTGTTTTCTTGTTAAGTAGATGAAGCCCTTTTATTGTCAGTGATGCCTTTCCATAAGAAGTTTCAGATCAATCTTTCAAGGTGATGGATGGCTTTAATGGGGATTTTGAATAGAGACATGAAATAGGTAGGGAGGTTTGCGAAAGTAACTTGGATTAATGTAAGCCTTCCACCTTTTGAAATAAAGCTACTCTTCCAAGATGAGATCTTCTTTTCAACTTTCTTAAGCATAGTGTTGGAATCTTCACTAGTTAAGAATATTAGAATTCTTACCATTTAAGAATATTTGTCATAATTGTAAGATAATTGTTATTATCATATTTATTCCTTGCCATTGTTGTAATGTTTCCATGATTGTAAAAGGTCTCTCTCCTATATAAGAAAACCTAGTGTGAATATATTTTAATCAAGCAATACATGATAATTGCTCTCAATATCAGAGCGGGAATCTTAGAAACTCCAATCGGAACCCTAGTCGTCGTCTCTAAAACGACACATCCTACTTCCGGTGGTTTCCTCGCATATTTTCTCTTCATCTATTCGTTCAACATCTACAACGAGGTGATTCTTACATCTATTCAAGTTGCTCGTCAGCCCATTCATAATTGCAGGAAAAGGAGCTATTACATTGATTGACAAAATATCCTTGCAGTCTGTTCTCCATGTTCCTAAATTATCCTACAATCTTTTATCTGTCAGTAAGCTTTCTAGAGATTCTAATTGTCGTGTAATTTTCTTTGAATCTCACTTTATTTTTCAAGATCAGAAATCAGAGAGGATGATTGGGAGTGCTAGGATGCTTGATGGTCTCTACTACTTTGATGAAGGTTCTTTTAGCAATAAAATAACTCAGGGTCTAAGTAGCATTAGTTCTCTCCCTGGTAAAGAACAGATCATGCTTTAGCATCGTAGGTTAGCACATCCTAATTTTTCTTACCTCAAGCATGTGTTTCCAAATTTATTTAAGGGGAATCAATTGCACCTCATTTGATTGTGAAAGTTGCATTTTAGCAAAAAATCATCGTTCCACATATTTTCCAAAACCTTACAAAGCTTCCAAACCCTTTAATCTAATACATAGTGATGTTTGGGGTGCTCTAAAATTAGGACTCATAGTGGAAAACGATGGTTTGTTACATTCATTGACGACCATACTCGTCTTTCTTGGGTTTATTTAATGGAAAAAAAATCTGAGGTGAAAGATATTTTTCAAATATTTTATAATATGATTGAAACCCAATTTCAAGCCAAAATTTGCATCTTACGCTCTGATAATGGAACTGAGTATTTTAATGAATTTTTGGGTAATTTCATAAAAGAAAAAGGTATTATTCATCAATCTACTTGTCGAGACACTCCTCAACAGAATGGGATTGCTAAAGAAAAAATAGGCATTTACTTGAAGTTGCTCGTGCAATAATGTTTTCTATGAATGTTTCAAAATATTTATGGGTTGAAGCTATTCTTACAGTTACTTACCTTATAAATAGGATGCCTAGTAAGATTTTGAATTTTAAAACTCCCATTGATTGTTCTAAAACTATTTTTCCAATGTCTCGCATATACTCTGATTTGCCTCTCAAAGTTTTTGGGTGTACCACTTATGTTCACATCCCTAATCATTTTCGCTCAAAACTTGACCATGGAGCTATTAAGTATATTTTCTTGGGTTACTCTTCTAATAAAAAAGGTTGTAAATGTTTTGATCCTCAGACCAAAAAAATATTTTTCAGCATGGATGTGTCTTTTCTTAAAAATCACCCTTACTTTACCCATAATTCTCTTCAAAGGGAGAAACAAATATTAGAAGAGAATTTTTGGGATACTTCTACCCCATTCCCCAATCTTTTATGTCCGATTGTTACTAGTCCTTCTATGCCAAGTCTAGAAACTTCTCAATCAGGGGGAGAAATACTACAAAATGATCCTATCGATCAAGTTCCTGAGTTACAATTTTATACTCGAAGAAAATTCAATCAAAGGAACCAAGACCAGATAGATGATCCTCCACAACTACAATCCGAGACTCTGACAGATGAAACTGAAAAACTTGTTAATCATTCTTCCATGCCTATTTCGTCAATTGAACATCCTTCTACTATTCAAAATACATTATCTGTTGTACCTGATCTGATTTTCCTATAGCCATTAGGAAAGGTACTGGAAGTTGTACGAACTATCCTATTGCAAATTACATGTCATATCAAAACTTATCAAATAATCATTGAGCCTTCACATCTAGGATTAATGATTTATTTGTTCCAAGAAATATACATGAAGCATTAGAGGATAAAAATTGGAAAGTAGCAGTTATGGATGAAATGACTGCTCTAAAAGAGAATGAGACATGGGAAATTGTGGAATTGCTAAGAGATAAGAAACCAATGGGTTGTAAATGGGTGTTTATAATTAAATGTAATGCAGATGGAAATGTTGAAAGATACAAGGCTAGACTGGTAGCTAAGGGTTTACTCAGACATATGTGATTGACTATCAAGAAACTTTTGCTCCTGTTGCTAAAATTAACTCAATTAGAGTTCTTTTGTCACTTGCAACTAATTTAGATTGGCCACTTTACCAACTTGACGTGAAAAATGCCTTCCTTAATGGCGATCTCGAGGAGGAAGTTTACATGAACGTGCCACCAGGTTTTGAAAAAGAACTTGGATACAATAGAACTTGCAAATTAAAGAAATCTCTTTACAGTCTGAAACAGTCTCCTAGAGCATGGTTTGAACGGTTTGGAAAAGTTGTATCTAGTTATGGATTTCTTCAAAGTCAAGCATATCATACTATATTCTATAAACATTGTGAGAATAATAAAATCTCAATTCTGATTGTCTATGTAGATGATATTATACTCATAGGCGATGATAACATTGGTTTAGCATATCTCAAGAAAAATCTCGCAAGAGACTTTCAAATCAAGGATTTGGGAATATTGAAGTATATTATGGGAATGGAGTTTGCAAGATCAAAGAAGGGTATTTTCGTAAATCAAAGAAAATATGTTCTTGATTTACTTGGAGAAACTGGATTGCTTGGTTGCAAGGTCGCTGAAACTCCTAGTGAACCCAATATGAAGTTACAAGTAGCAAAGTCGGAAGAAATAAAAGATAGAGAACGATACCAAAGGCTTGTAGGAAGGTTAATTTATCTATCTCATACGCGTCCTGATATTGCATATACCGTGACTATGGTAAGTCAATTTATGCATGCACCTGGACCGAGTCATTTTGAAGCTGCCTATAGAATTTTGAGGTATCTAAAAGAAACTCCTGGAAAAGGTATTCTATTCAAAAAGCAAAATCATTTTCGAATAAAAGGAACTCCTGGAAAAGGTAAAGACCCATTGCATATTTGGGTCATACTTTATCCCACCGAAACAAATCCAAATCTATTTACGAAAGAGAGTTAATGGCCATTGTTCTCGCCGTCCAAAAATGGCGACCCTATCTCTTAGGCCACAAGTTCAAGGTCAGGATGGACCAACAAGCCCTCAAACATTTGCTAGAACAAAGAGAGATATAACCGGAATACCAGAAATGGTTATATAAACTGTTGGGCTACGACTTTGAGGTAGAATATTGACCATGGCTTGAGAACAAAGCTGCTGATGGACTGTCCCGAGTTCCCCTTGCACCAGATCTAGCATCGCCAACGATCCCATATATATTGGACCTCGACATCGTTCAACACGAAGTAGAAGCAAATTCAGATTTGCGAAACAACATCATTGACCTACAATCCAATCTAGAGAGCTGGTCGCATTTCACTATCAAACAAGGGAGGTTATTGTACAAGAACCGTTTGATCCTAACTGCCCAATCGAAATTAAGAGCAACAGTTATGCACGTGTATCACGATTCGATCTTAGGAACAAAGCTACTGATGGACTGTCCCGAGTTCCCCCTGCACCACATCTAGCATCACCAACGGTCCCACATATATTGGACCTCGATATCGTTCAACACGAAGTTGAAATAGATCCAAATTTGCAAAACATCATCATTGACCTACAATCCAATCCATAGAGTTGACCACATTTCACTATCAAACAAGGGAGGCTATTGTACAATAACCGTTCGGTCCTAATCGCCCAATCAAAATTAAGAGCAGCAGTTATGCACGCGTATCACGATTCGATCTTAGGAGGCCACTCGGGGTTTTTGAGAACCTATAAGCGACTGACATGAGAACTATATTGGGTTGGAATGAAGAACGATGTTCAAAAATATTGTGAGGAATGTTTCATTTGCCAGAGGAATAAAACATCCACTCAATCCCCTACCGGCTTGTACAACCATTCCCTCACCCTGACCGCATCTGGGAGGACATTTCAATGGACTTCGTAGAGGGATTGCCTAAATCTTTAGGGACCGAAACAATCATGGTAGTGGTTGATCATTTGAGTAAGTATGCCCACTTTGTAGCCTTGAGACACTCTTACTCGGCTAAAATTCTAGCGTCCACATTTGTCTAGGAAGTCATCCGATTACACGGGTTCCCGTGATCAATTGTCTCTAACAGGGACAAAATCGTTATTAGCCACTTATGGACCGAGCTTTTCTGCCTACAGGGCACTAAGTTACACCGAAGCACCATCTATCATCCTCAAATGGATGGACAAACAAAACTAGTAAACAAGTGTGTAGAAACGTATTTCAGGTGTTTATGTAGAGAGAATACTAACTACCACCGTCTCTCAACATCACCCCATTCCAAGTAGTATATGGGCGTGCACCACCACCAGTGATGTTTTATGGGGATCAACGCACGACGAATGCAACCTTAGATGAACAACTCAGGGAAAGGGATGACATGCTAGACAAAATTAAGGAACAGCTTTGCAAGGCACAAAATCGAATGAAGAAAAGTGCGGACAAGAAACGAAGAGACGTGGAATTCGAGAAAGGAGAATCGGTATTTCTTAAGTTACGACCATATAGACAGACTTCTATGGCTAAAAGACGAAATGAGAAACTCAACCCAAAGTTTTTTGGACCATACCCAATTGTGGCTCGCATTGGCACAGTAGCATCAAACTAGAATTACCCCCAGAGTCATCCATCCACATGGTCTTTCACGTCTCACAACTCAAAAGGGAAATAGGACCAAATGATATGGCGCAAATTTTGGGACCAATGCTCACGGATATTGAATGGATAGCTCAACCCCAAGAAGTGTATGCTTATCAGTGCAATGAGCAAACTGAAGAAGTTGATGTCTTGATCGCATGGAAAGGCCTTCTAGCCCATGAATTGGGAATGAACTGCCTTGATCTGCCAACAATTCCCAGCCTTCCACCTTGAGGACAAGGTGGATTCCAACATCGGGGGATATGTTAGACCCCCTATCAAGAACGTTTACCAAAGAAGAGGAAGAAACGACAACTAACCGGTAGCATTTATTATAGCCGTTAGGCTTATGCTTGTTATTTCTATTTAAGTCATTTTGTGTTCTAGGTTAAAGCACACTTAATATCTGGTATTCGTCTGTTGGCAAAGTTGGAGAGCTTCATCCTCTCAAAAGGTGGAAGATCTATGTTTTGTGGCTGAATTCTGTAATCGCAAAGTTCTAATAGAATTACTAACTTTTGGTGCCTTAACACAAACCTTCAGCTAAATTTTTTTTTATTTCTATAATGTATGACAGGGTCAATGTCACAATTGGTGAACAAGAAAAACGGATGATGACCACAGGACTACACATCGTTGTTGACATATTTTGTGTTGGTTGTGACTCAATTATGGCCTGGAAATATGTAAGAACTTTTTTTTTTTTTGAAACAATGTAAGAACTTATTTTCTTTCTTGCTTTCTTGATTATCAAATATTTTCCTAATACCTCTCTGTTGAATTAGGAGGTTGCCTTTGACAAATCCCAAAAGTACAAGGAAGGGAAATATATCCTTGAAATTTGAGGCCCAATGCACATACTTGTTAGTTTTTTTTATATCAGAAAATTCTGTGAATGAAGGATGGAATTTTTAGTTCACTGACAACATTCTTAACATCTGCTTGTTTATTAAGCTTCAATGATGACCATCATGGTTTGACCTAGTGGTCGAGTGAGTCTTCAAAAATTAAAAAAAATATGAGTTAAATTTATGGTAGCCACCTATTTAAGAATTAATTTTTGCGGGTTTTCTTAACATCCAAATGTTGTAAGGTAAGACATGTTATTCCATGAGTATAGTTGAGGTCTGGTCCAAACATGGATATATAAAAAAAGAAAGAAATGACCTTTGGTCAAATATCAAACTTATTTCATGTTATGATCCATCTGATGTAAAGAATTTTCCTCTGTATCGCCACAAACACGATTCTTGATTTCTTTGTGGTCTTTGGAAAAAAAAAATCTTTGCAGGTTTAAGGTGTTGGATCCTTATGGAATCATCTACTTAGCAACTCATGATCCACCACTTGCACTAAGTGATGACGAAGATGCTTGATCTGTTGTCGAGTTTCGACGTAAATATAATCATTTTTCGCAACCTCTTTTTTGTTTCATCTATTTGCCATTTAGCTGTTCCTTGAACTTTTTGGTACACTGCTTCTGCAGTTTTGGCTGGCAACACAAGAACAACCCTATTTGTCATTCTTCTTTTTCAGGTCTTTTTTAATGTGACATTAATTGAAAACTATTCTTATTCAAGAATATTTGTGGAAGCCAAACTTGTTGTGATATTGAATGAAGACTATAAGAGTACTCTATCCATTGCACTAATTGAAGCAATCAAACTCAACTTTTTAGTTGGGAACATTACGACTAGAAGCAATGAAAACACTTCATTTCTTTAATGTTTGAACTAAGATATTTAGTTTTTTAAACAACATAATTGAAGCACCAAATTGAGTTCGAATTCTAAATTTGTTCGTTTCAGTTTAGTCTTTAAACATCCTCTACAATAATTTCAATCATGACCTTAGAGAGAAAATAGATTAAATCAATACCAAATTAGATAATCACCAACCCATGTAAGATAATATTAATAATTCTTTTTCATCCCAACTATAAACAATAATTATAATCACTCTCTATTTTTCCGACTAATTATTTTCAATTTCAAACTAAAACAAATCCTAAAGAAACCACAGCCACAAACTTTGGAAACAAAAATCGAGTGAAACGTAGTCGGATAAGGCAAAGATAAGGGCAGGACACAGAAGGGCCGTCAGATGGATTCGCATCCAAATCCAACGGAGACAAACTCACACCCGCAGATTACGTGGCAAAGCGGCGATCACAATTCCGCACATAATAACCGAACCAAAAGGCCTCCAAATTCCCATCTCACAAATTCGCCCACCTCTGAAAGCTCGCCGTCGCAATGGCCGCCGCCACCGCCGCCGCGTCCTCGTTCATCGCCACCCGCCTCGCCGACGCACGGCGGGGGTCCGGCAAAGGCAAAGTAGAAGCCCGGTTCTCGTTCGGCAAGAAGAAAGCCGGTCCGGCGAAGAAAAAGGCGTCCTCGAAGAGGGTTCCGGACCGGCCGCTGTGGTACCCGGGAGCGAAGGCGCCGGAGTGGCTGGACGGGAGCCTGGTCGGGGACTACGGGTTCGACCCGTTCGGGCTGGGTAAACCGGCGGAGTATTTGCAGTACGAATTGGACTCGCTGGACCAGAACTTGGCGAAGAACTCGGCGGGCGATCTAATCGGGACGAGATTTGAGAACTCGGAGGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTGTTTGGACTGCAGAGATTTCGTGAGTGTGAACTCATTCATGGACGGTGGGCCATGTTGGCCACTCTCGGCGCTCTCTCGGTTGAGTGGCTCACTGGCATCACTTGGCAAGACGCTGGAAAAGTGAGCTCTATTTTCTTTTCTTTTTTTTATTTAATTACTCATGTTCAAACAAGATTTTGACTATAACTCACTATACAAAAACTAAATTCAAACGAGTTTTTGACACAAATTTCAATTTTTAGCTACTCAATCTAACTTCTTAACCTAAAAACTACTTAAATATGTCAAACAAACATCGTAGATTCTTCTCGCATAAGATCTTAATATCAATTTTCAGAATGAAACCAATATGGATAGCCATAAATTTAATTTTTAATAAACCATTTTCACCTTTTAGTATTTTTCCTATTATTATTATTATTATCAATAGAATATATGTAGCAAGTGATTTAAAATCATGGTGAAGTAAATTTAAAGGATTAAGAGCCATTAATTTTTGTCTTTCTAATAATATTTAATATAAAATAAGTGATTGTTTCATAAAAATAGTGTACCTATGGGAATGCATATATTTTATATGGATAATATTGTAGGTAGAATTAGTGGAAGGTTCATCATACCTGGGTCAGCCGCTGCCATTCACCGTAACGACATTGATCTGGATCGAAGTGCTTGTGATTGGATACATCGAATTCCAAAGAAACGCGGAGTTGGAGCCAGAGAAGAGGTTGTACCCAGGCGGGAAGTTCTTCGACCCATTGGGCCTGGCGGAGGACCCGGAGAAGAAAGTCGTCCTACAGTTGGCTGAGATCAAGCACGCTCGCCTCGCCATGGTTGCCTTTCTCGGCTTTGCGGTCCAGGCCGCCGTCACCGGCAAAGGCCCGCTCAACAACTGGGCCACCCATTTGAGCGACCCGCTCCACACCACCATCATCGACTCCTTCTCTTCTTAGTTAATTTACGTGTTTGTTAAAACTTCACCTTTCAATTATGTGATGAGTTGTAAGTACTTTCATTTTCATATTATAAGGTTTTCCACAATACCTAGTTATTATTTTTGTTTTGGATGGTGGTTGATTTATATGACTTTATCTAACAAGATTAATATTTTTTTTTTTAAACAAGGGTAACCACACCCGTCTTTAGGCCAGAC

mRNA sequence

ATGGCCGCCGCCACCGCCGCCGCGTCCTCGTTCATCGCCACCCGCCTCGCCGACGCACGGCGGGGGTCCGGCAAAGGCAAAGTAGAAGCCCGGTTCTCGTTCGGCAAGAAGAAAGCCGGTCCGGCGAAGAAAAAGGCGTCCTCGAAGAGGGTTCCGGACCGGCCGCTGTGGTACCCGGGAGCGAAGAAAAAGGCGTCCTCGAAGAGGGTTCCGGACCGGCCGCTGTGGTACCCGGGAGCGAAGGCGCCGGAGTGGCTGGACGGGAGCCTGGTCGGGGACTACGGGTTCGACCCGTTCGGGCTGGGTAAACCGGCGGAGTATTTGCAGTACGAATTGGACTCGCTGGACCAGAACTTGGCGAAGAACTCGGCGGGCGATCTAATCGGGACGAGATTTGAGAACTCGGAGGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTGTTTGGACTGCAGAGATTTCGTGAGTGTGAACTCATTCATGGACGGTGGGCCATGTTGGCCACTCTCGGCGCTCTCTCGGTTGAGTGGCTCACTGGCATCACTTGGCAAGACGCTGGAAAAGTAGAATTAGTGGAAGGTTCATCATACCTGGGTCAGCCGCTGCCATTCACCGTAACGACATTGATCTGGATCGAAGTGCTTGTGATTGGATACATCGAATTCCAAAGAAACGCGGAGTTGGAGCCAGAGAAGAGGTTGTACCCAGGCGGGAAGTTCTTCGACCCATTGGGCCTGGCGGAGGACCCGGAGAAGAAAGTCGTCCTACAGTTGGCTGAGATCAAGCACGCTCGCCTCGCCATGGTTGCCTTTCTCGGCTTTGCGGTCCAGGCCGCCGTCACCGGCAAAGGCCCGCTCAACAACTGGGCCACCCATTTGAGCGACCCGCTCCACACCACCATCATCGACTCCTTCTCTTCTTAGTTAATTTACGTGTTTGTTAAAACTTCACCTTTCAATTATGTGATGAGTTGTAAGTACTTTCATTTTCATATTATAAGGTTTTCCACAATACCTAGTTATTATTTTTGTTTTGGATGGTGGTTGATTTATATGACTTTATCTAACAAGATTAATATTTTTTTTTTTAAACAAGGGTAACCACACCCGTCTTTAGGCCAGAC

Coding sequence (CDS)

ATGGCCGCCGCCACCGCCGCCGCGTCCTCGTTCATCGCCACCCGCCTCGCCGACGCACGGCGGGGGTCCGGCAAAGGCAAAGTAGAAGCCCGGTTCTCGTTCGGCAAGAAGAAAGCCGGTCCGGCGAAGAAAAAGGCGTCCTCGAAGAGGGTTCCGGACCGGCCGCTGTGGTACCCGGGAGCGAAGAAAAAGGCGTCCTCGAAGAGGGTTCCGGACCGGCCGCTGTGGTACCCGGGAGCGAAGGCGCCGGAGTGGCTGGACGGGAGCCTGGTCGGGGACTACGGGTTCGACCCGTTCGGGCTGGGTAAACCGGCGGAGTATTTGCAGTACGAATTGGACTCGCTGGACCAGAACTTGGCGAAGAACTCGGCGGGCGATCTAATCGGGACGAGATTTGAGAACTCGGAGGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTGTTTGGACTGCAGAGATTTCGTGAGTGTGAACTCATTCATGGACGGTGGGCCATGTTGGCCACTCTCGGCGCTCTCTCGGTTGAGTGGCTCACTGGCATCACTTGGCAAGACGCTGGAAAAGTAGAATTAGTGGAAGGTTCATCATACCTGGGTCAGCCGCTGCCATTCACCGTAACGACATTGATCTGGATCGAAGTGCTTGTGATTGGATACATCGAATTCCAAAGAAACGCGGAGTTGGAGCCAGAGAAGAGGTTGTACCCAGGCGGGAAGTTCTTCGACCCATTGGGCCTGGCGGAGGACCCGGAGAAGAAAGTCGTCCTACAGTTGGCTGAGATCAAGCACGCTCGCCTCGCCATGGTTGCCTTTCTCGGCTTTGCGGTCCAGGCCGCCGTCACCGGCAAAGGCCCGCTCAACAACTGGGCCACCCATTTGAGCGACCCGCTCCACACCACCATCATCGACTCCTTCTCTTCTTAG

Protein sequence

MAAATAAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYPGAKKKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLAKNSAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGITWQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

Homology

[Close]

BLAST of Sed0025923 vs. NCBI nr
Match: XP_022966541.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita maxima] >XP_023517083.1 chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7027389.1 Chlorophyll a-b binding protein CP29.2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 516.5 bits (1329), Expect = 1.5e-142
Identity = 260/307 (84.69%), Postives = 273/307 (88.93%), Query Frame = 0


Query: 1   MAAATAAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYPG 60
           MAA +AA SSFI TRLAD R  S  G+V+ARFSFGKKK+                     
Sbjct: 1   MAATSAATSSFIGTRLADVR--SSSGRVQARFSFGKKKS--------------------P 60

Query: 61  AKKKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLA 120
           AKK  SSK++PDRPLW+PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQY+LDSLDQNLA
Sbjct: 61  AKKSPSSKQIPDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLA 120

Query: 121 KNSAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG 180
           KN AGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGAL+VEWLTG
Sbjct: 121 KNVAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG 180

Query: 181 ITWQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGKF 240
           +TWQDAGKVELVEGSSYLGQPLPF++T LIWIEVLVIGYIEFQRNAELEPEKRLYPGGKF
Sbjct: 181 VTWQDAGKVELVEGSSYLGQPLPFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKF 240

Query: 241 FDPLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTT 300
           FDPLGLAEDPEKK VLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTT
Sbjct: 241 FDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTT 285

Query: 301 IIDSFSS 308
           IID+FSS
Sbjct: 301 IIDNFSS 285

[Close]

BLAST of Sed0025923 vs. NCBI nr
Match: XP_022931964.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 515.8 bits (1327), Expect = 2.6e-142
Identity = 260/307 (84.69%), Postives = 273/307 (88.93%), Query Frame = 0


Query: 1   MAAATAAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYPG 60
           MAA +AA SSFI TRLAD R  S  G+V+ARFSFGKKK+                     
Sbjct: 1   MAATSAATSSFIGTRLADVR--SSSGRVQARFSFGKKKS--------------------P 60

Query: 61  AKKKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLA 120
           AKK  SSK++PDRPLW+PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQY+LDSLDQNLA
Sbjct: 61  AKKLPSSKQIPDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLA 120

Query: 121 KNSAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG 180
           KN AGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGAL+VEWLTG
Sbjct: 121 KNVAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG 180

Query: 181 ITWQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGKF 240
           +TWQDAGKVELVEGSSYLGQPLPF++T LIWIEVLVIGYIEFQRNAELEPEKRLYPGGKF
Sbjct: 181 VTWQDAGKVELVEGSSYLGQPLPFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKF 240

Query: 241 FDPLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTT 300
           FDPLGLAEDPEKK VLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTT
Sbjct: 241 FDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTT 285

Query: 301 IIDSFSS 308
           IID+FSS
Sbjct: 301 IIDNFSS 285

[Close]

BLAST of Sed0025923 vs. NCBI nr
Match: XP_022151483.1 (chlorophyll a-b binding protein CP29.1, chloroplastic [Momordica charantia])

HSP 1 Score: 509.6 bits (1311), Expect = 1.9e-140
Identity = 259/310 (83.55%), Postives = 271/310 (87.42%), Query Frame = 0


Query: 1   MAAAT---AAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLW 60
           MAAAT   AA SSFI TRL D R  S  G+V+ARFSFGKKK  P                
Sbjct: 1   MAAATATAAATSSFIGTRLPDVRPSS--GRVQARFSFGKKKTAP---------------- 60

Query: 61  YPGAKKKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQ 120
                 K SSK++ DRPLW+PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQY+LDSLDQ
Sbjct: 61  ------KKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQ 120

Query: 121 NLAKNSAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEW 180
           NLAKN AGD+IGTRFENS+VKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEW
Sbjct: 121 NLAKNVAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEW 180

Query: 181 LTGITWQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPG 240
           LTG+TWQDAGKVELVEGSSYLGQPLPF++TTLIWIEVLVIGYIEFQRNAEL+PEKRLYPG
Sbjct: 181 LTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPG 240

Query: 241 GKFFDPLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPL 300
           GKFFDPLGLAEDPEKK VLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPL
Sbjct: 241 GKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPL 286

Query: 301 HTTIIDSFSS 308
           HTTIIDSFSS
Sbjct: 301 HTTIIDSFSS 286

[Close]

BLAST of Sed0025923 vs. NCBI nr
Match: XP_038882769.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 505.4 bits (1300), Expect = 3.5e-139
Identity = 254/305 (83.28%), Postives = 269/305 (88.20%), Query Frame = 0


Query: 3   AATAAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYPGAK 62
           A  AA SSFI TRLA+ R  S  G+V+ARF FGKKK+ P                    K
Sbjct: 2   ATAAATSSFIGTRLAELRPCS--GRVQARFGFGKKKSPP--------------------K 61

Query: 63  KKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLAKN 122
           K  SSK + DRPLW+PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQY+LDSLDQNLAKN
Sbjct: 62  KSPSSKTISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKN 121

Query: 123 SAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGIT 182
            AGD+IGTRFE++EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG+T
Sbjct: 122 VAGDIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVT 181

Query: 183 WQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFD 242
           WQDAGKVELVEGSSYLGQPLPF++TTLIWIEVLVIGYIEFQRNAEL+PEKRLYPGGKFFD
Sbjct: 182 WQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFD 241

Query: 243 PLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII 302
           PLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII
Sbjct: 242 PLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII 284

Query: 303 DSFSS 308
           D+FSS
Sbjct: 302 DNFSS 284

[Close]

BLAST of Sed0025923 vs. NCBI nr
Match: XP_008449241.1 (PREDICTED: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucumis melo] >KAA0045037.1 chlorophyll a-b binding protein CP29.1 [Cucumis melo var. makuwa] >TYJ96289.1 chlorophyll a-b binding protein CP29.1 [Cucumis melo var. makuwa])

HSP 1 Score: 500.7 bits (1288), Expect = 8.7e-138
Identity = 252/305 (82.62%), Postives = 267/305 (87.54%), Query Frame = 0


Query: 3   AATAAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYPGAK 62
           A  AA SSFI TRLA+    S  G+V+ARF FGKKK+ P                    K
Sbjct: 2   ATAAATSSFIGTRLAEIVPSS--GRVQARFGFGKKKSPP--------------------K 61

Query: 63  KKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLAKN 122
           K  SSK + DRPLW+PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQY+LDSLDQNLAKN
Sbjct: 62  KSPSSKGISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKN 121

Query: 123 SAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGIT 182
            AGD+IGTRFE++EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG+T
Sbjct: 122 VAGDIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVT 181

Query: 183 WQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFD 242
           WQDAGKVELVEGSSYLGQPLPF++TTLIWIEVLVIGYIEFQRNAEL+PEKRLYPGGKFFD
Sbjct: 182 WQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFD 241

Query: 243 PLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII 302
           PLGLAEDPEKK VLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII
Sbjct: 242 PLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII 284

Query: 303 DSFSS 308
           D+FSS
Sbjct: 302 DNFSS 284

[Close]

BLAST of Sed0025923 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 1.3e-128
Identity = 232/306 (75.82%), Postives = 253/306 (82.68%), Query Frame = 0


Query: 2   AAATAAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYPGA 61
           +AA AAASS + TR+A      G G+  A F FGKKKA P                    
Sbjct: 5   SAAAAAASSIMGTRVAPGIH-PGSGRFTAVFGFGKKKAAP-------------------- 64

Query: 62  KKKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLAK 121
           KK A      DRPLWYPGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+++DSLDQNLAK
Sbjct: 65  KKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAK 124

Query: 122 NSAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGI 181
           N AGD+IGTR E ++ KSTPFQPY+EVFG+QRFRECELIHGRWAMLATLGALSVEWLTG+
Sbjct: 125 NLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV 184

Query: 182 TWQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFF 241
           TWQDAGKVELV+GSSYLGQPLPF+++TLIWIEVLVIGYIEFQRNAEL+ EKRLYPGGKFF
Sbjct: 185 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFF 244

Query: 242 DPLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTI 301
           DPLGLA DPEK   LQLAEIKHARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTI
Sbjct: 245 DPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTI 289

Query: 302 IDSFSS 308
           ID+FSS
Sbjct: 305 IDTFSS 289

[Close]

BLAST of Sed0025923 vs. ExPASy Swiss-Prot
Match: Q9XF88 (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.3e-123
Identity = 224/305 (73.44%), Postives = 248/305 (81.31%), Query Frame = 0


Query: 3   AATAAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYPGAK 62
           +  AAASS + TR+  +   S   +  ARF FG KKA P K K                 
Sbjct: 5   STAAAASSIMGTRVV-SDISSNSSRFTARFGFGTKKASPKKAKTV--------------- 64

Query: 63  KKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLAKN 122
                  + DRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ++LDSLDQNLAKN
Sbjct: 65  -------ISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKN 124

Query: 123 SAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGIT 182
             G++IGTR E  + KSTPFQPY+EVFGLQRFRECELIHGRWAMLATLGA++VEWLTG+T
Sbjct: 125 LYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVT 184

Query: 183 WQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFD 242
           WQDAGKVELV+GSSYLGQPLPF+++TLIWIEVLVIGYIEFQRNAEL+ EKRLYPGGKFFD
Sbjct: 185 WQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFD 244

Query: 243 PLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII 302
           PLGLA DP KK  LQLAEIKHARLAMV FLGFAVQAA TGKGPLNNWATHLSDPLHTTII
Sbjct: 245 PLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTII 286

Query: 303 DSFSS 308
           D+FSS
Sbjct: 305 DTFSS 286

[Close]

BLAST of Sed0025923 vs. ExPASy Swiss-Prot
Match: Q9S7W1 (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.3 PE=2 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 1.0e-104
Identity = 200/292 (68.49%), Postives = 230/292 (78.77%), Query Frame = 0


Query: 1   MAAATAAASSFI-ATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYP 60
           MA  TAAA+S I   R+ D R G+G+ +    FSFGKKK  P  KK  S++V D      
Sbjct: 1   MATTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKK--SRQVQDD----- 60

Query: 61  GAKKKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNL 120
                       DR +W+PGA  PEWLDGS++GD GFDPFGLGKPAEYLQY+ D LDQNL
Sbjct: 61  -----------GDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNL 120

Query: 121 AKNSAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLT 180
           AKN AGD+IG   E+SE+K TPFQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LT
Sbjct: 121 AKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALT 180

Query: 181 GITWQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGK 240
           GI WQDAGKVELVEGSSYLGQPLPF++TTLIWIEVLV+GYIEFQRN+EL+PEKR+YPGG 
Sbjct: 181 GIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG- 240

Query: 241 FFDPLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWAT 292
           +FDPLGLA DPEK   L+LAEIKH+RLAMVAFL FA+QAA TGKGP++  AT
Sbjct: 241 YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

[Close]

BLAST of Sed0025923 vs. ExPASy Swiss-Prot
Match: Q93WD2 (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 243.4 bits (620), Expect = 3.3e-63
Identity = 136/259 (52.51%), Postives = 167/259 (64.48%), Query Frame = 0


Query: 36  KKKAGPAKKKASSKRVPDRPLWYPGAKK-KASSKRVPDRPLWYPGAKAPEWLDGSLVGDY 95
           +KKAG    K + K    +     G +      ++     LW P    PEWLDGSL GD 
Sbjct: 12  QKKAGTTATKPAPKATTKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDR 71

Query: 96  GFDPFGLGKPAEYLQYELDSLDQNLAKNSAGDLIG-TRFENSEVKS-TPFQPYTEVFGLQ 155
           GFDP GL KP+E++   +D  DQN AKN+ G +    +    EV S     PY+EVFGL 
Sbjct: 72  GFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLA 131

Query: 156 RFRECELIHGRWAMLATLGALSVEWLTGITWQDAGKVELVEGSSYLGQPLPFTVTTLIWI 215
           RFRECELIHGRWAMLA LGAL  E  TG++W +AGKVEL +G+SY G  LPF++T LIWI
Sbjct: 132 RFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWI 191

Query: 216 EVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLA-EDPEKKVVLQLAEIKHARLAMVAF 275
           EV+++G  EF RN+E  PEKR YPGG  FDPL LA ED E+   L+ AEIKHARLAMV+F
Sbjct: 192 EVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSF 251

Query: 276 LGFAVQAAVTGKGPLNNWA 291
            G+ VQA  TG+G L + A
Sbjct: 252 FGYGVQALSTGEGALGSLA 268

[Close]

BLAST of Sed0025923 vs. ExPASy Swiss-Prot
Match: Q01667 (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.2e-38
Identity = 97/233 (41.63%), Postives = 128/233 (54.94%), Query Frame = 0


Query: 76  WYPGAKAPEWLDGSLVGDYGFDPFGLGK-PAEYLQYELDSLDQNLAKNSAGDLIGTRFEN 135
           W PG   P +LDGS  GD+GFDP GLG+ PA                             
Sbjct: 48  WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPA----------------------------- 107

Query: 136 SEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGITWQDAGKVELVEG 195
                           L+R++E ELIH RWAMLA  G L  E L    W  A +   + G
Sbjct: 108 ---------------NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPG 167

Query: 196 --SSYLGQPLPF-TVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPE 255
             ++YLG P+P+ T+ T++ IE L I ++E QR+ E +PEK+ YPGG  FDPLG ++DP+
Sbjct: 168 GQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPK 227

Query: 256 KKVVLQLAEIKHARLAMVAFLGFAV-QAAVTGKGPLNNWATHLSDPLHTTIID 304
           K   L++ EIK+ RLA++AF+GF V Q+A  G GPL N ATHL+DP H  I D
Sbjct: 228 KLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 235

[Close]

BLAST of Sed0025923 vs. ExPASy TrEMBL
Match: A0A6J1HPL7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466190 PE=3 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 7.4e-143
Identity = 260/307 (84.69%), Postives = 273/307 (88.93%), Query Frame = 0


Query: 1   MAAATAAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYPG 60
           MAA +AA SSFI TRLAD R  S  G+V+ARFSFGKKK+                     
Sbjct: 1   MAATSAATSSFIGTRLADVR--SSSGRVQARFSFGKKKS--------------------P 60

Query: 61  AKKKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLA 120
           AKK  SSK++PDRPLW+PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQY+LDSLDQNLA
Sbjct: 61  AKKSPSSKQIPDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLA 120

Query: 121 KNSAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG 180
           KN AGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGAL+VEWLTG
Sbjct: 121 KNVAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG 180

Query: 181 ITWQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGKF 240
           +TWQDAGKVELVEGSSYLGQPLPF++T LIWIEVLVIGYIEFQRNAELEPEKRLYPGGKF
Sbjct: 181 VTWQDAGKVELVEGSSYLGQPLPFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKF 240

Query: 241 FDPLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTT 300
           FDPLGLAEDPEKK VLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTT
Sbjct: 241 FDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTT 285

Query: 301 IIDSFSS 308
           IID+FSS
Sbjct: 301 IIDNFSS 285

[Close]

BLAST of Sed0025923 vs. ExPASy TrEMBL
Match: A0A6J1EVQ5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111438232 PE=3 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 1.3e-142
Identity = 260/307 (84.69%), Postives = 273/307 (88.93%), Query Frame = 0


Query: 1   MAAATAAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYPG 60
           MAA +AA SSFI TRLAD R  S  G+V+ARFSFGKKK+                     
Sbjct: 1   MAATSAATSSFIGTRLADVR--SSSGRVQARFSFGKKKS--------------------P 60

Query: 61  AKKKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLA 120
           AKK  SSK++PDRPLW+PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQY+LDSLDQNLA
Sbjct: 61  AKKLPSSKQIPDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLA 120

Query: 121 KNSAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG 180
           KN AGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGAL+VEWLTG
Sbjct: 121 KNVAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG 180

Query: 181 ITWQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGKF 240
           +TWQDAGKVELVEGSSYLGQPLPF++T LIWIEVLVIGYIEFQRNAELEPEKRLYPGGKF
Sbjct: 181 VTWQDAGKVELVEGSSYLGQPLPFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKF 240

Query: 241 FDPLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTT 300
           FDPLGLAEDPEKK VLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTT
Sbjct: 241 FDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTT 285

Query: 301 IIDSFSS 308
           IID+FSS
Sbjct: 301 IIDNFSS 285

[Close]

BLAST of Sed0025923 vs. ExPASy TrEMBL
Match: A0A6J1DCA5 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019415 PE=3 SV=1)

HSP 1 Score: 509.6 bits (1311), Expect = 9.1e-141
Identity = 259/310 (83.55%), Postives = 271/310 (87.42%), Query Frame = 0


Query: 1   MAAAT---AAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLW 60
           MAAAT   AA SSFI TRL D R  S  G+V+ARFSFGKKK  P                
Sbjct: 1   MAAATATAAATSSFIGTRLPDVRPSS--GRVQARFSFGKKKTAP---------------- 60

Query: 61  YPGAKKKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQ 120
                 K SSK++ DRPLW+PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQY+LDSLDQ
Sbjct: 61  ------KKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQ 120

Query: 121 NLAKNSAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEW 180
           NLAKN AGD+IGTRFENS+VKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEW
Sbjct: 121 NLAKNVAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEW 180

Query: 181 LTGITWQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPG 240
           LTG+TWQDAGKVELVEGSSYLGQPLPF++TTLIWIEVLVIGYIEFQRNAEL+PEKRLYPG
Sbjct: 181 LTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPG 240

Query: 241 GKFFDPLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPL 300
           GKFFDPLGLAEDPEKK VLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPL
Sbjct: 241 GKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPL 286

Query: 301 HTTIIDSFSS 308
           HTTIIDSFSS
Sbjct: 301 HTTIIDSFSS 286

[Close]

BLAST of Sed0025923 vs. ExPASy TrEMBL
Match: A0A5D3BBB3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00840 PE=3 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 4.2e-138
Identity = 252/305 (82.62%), Postives = 267/305 (87.54%), Query Frame = 0


Query: 3   AATAAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYPGAK 62
           A  AA SSFI TRLA+    S  G+V+ARF FGKKK+ P                    K
Sbjct: 2   ATAAATSSFIGTRLAEIVPSS--GRVQARFGFGKKKSPP--------------------K 61

Query: 63  KKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLAKN 122
           K  SSK + DRPLW+PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQY+LDSLDQNLAKN
Sbjct: 62  KSPSSKGISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKN 121

Query: 123 SAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGIT 182
            AGD+IGTRFE++EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG+T
Sbjct: 122 VAGDIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVT 181

Query: 183 WQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFD 242
           WQDAGKVELVEGSSYLGQPLPF++TTLIWIEVLVIGYIEFQRNAEL+PEKRLYPGGKFFD
Sbjct: 182 WQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFD 241

Query: 243 PLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII 302
           PLGLAEDPEKK VLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII
Sbjct: 242 PLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII 284

Query: 303 DSFSS 308
           D+FSS
Sbjct: 302 DNFSS 284

[Close]

BLAST of Sed0025923 vs. ExPASy TrEMBL
Match: A0A1S3BMH8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491174 PE=3 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 4.2e-138
Identity = 252/305 (82.62%), Postives = 267/305 (87.54%), Query Frame = 0


Query: 3   AATAAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYPGAK 62
           A  AA SSFI TRLA+    S  G+V+ARF FGKKK+ P                    K
Sbjct: 2   ATAAATSSFIGTRLAEIVPSS--GRVQARFGFGKKKSPP--------------------K 61

Query: 63  KKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLAKN 122
           K  SSK + DRPLW+PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQY+LDSLDQNLAKN
Sbjct: 62  KSPSSKGISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKN 121

Query: 123 SAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGIT 182
            AGD+IGTRFE++EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG+T
Sbjct: 122 VAGDIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVT 181

Query: 183 WQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFD 242
           WQDAGKVELVEGSSYLGQPLPF++TTLIWIEVLVIGYIEFQRNAEL+PEKRLYPGGKFFD
Sbjct: 182 WQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFD 241

Query: 243 PLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII 302
           PLGLAEDPEKK VLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII
Sbjct: 242 PLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII 284

Query: 303 DSFSS 308
           D+FSS
Sbjct: 302 DNFSS 284

[Close]

BLAST of Sed0025923 vs. TAIR 10
Match: AT5G01530.1 (light harvesting complex photosystem II )

HSP 1 Score: 460.7 bits (1184), Expect = 9.3e-130
Identity = 232/306 (75.82%), Postives = 253/306 (82.68%), Query Frame = 0


Query: 2   AAATAAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYPGA 61
           +AA AAASS + TR+A      G G+  A F FGKKKA P                    
Sbjct: 5   SAAAAAASSIMGTRVAPGIH-PGSGRFTAVFGFGKKKAAP-------------------- 64

Query: 62  KKKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLAK 121
           KK A      DRPLWYPGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+++DSLDQNLAK
Sbjct: 65  KKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAK 124

Query: 122 NSAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGI 181
           N AGD+IGTR E ++ KSTPFQPY+EVFG+QRFRECELIHGRWAMLATLGALSVEWLTG+
Sbjct: 125 NLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV 184

Query: 182 TWQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFF 241
           TWQDAGKVELV+GSSYLGQPLPF+++TLIWIEVLVIGYIEFQRNAEL+ EKRLYPGGKFF
Sbjct: 185 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFF 244

Query: 242 DPLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTI 301
           DPLGLA DPEK   LQLAEIKHARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTI
Sbjct: 245 DPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTI 289

Query: 302 IDSFSS 308
           ID+FSS
Sbjct: 305 IDTFSS 289

[Close]

BLAST of Sed0025923 vs. TAIR 10
Match: AT3G08940.2 (light harvesting complex photosystem II )

HSP 1 Score: 444.1 bits (1141), Expect = 9.0e-125
Identity = 224/305 (73.44%), Postives = 248/305 (81.31%), Query Frame = 0


Query: 3   AATAAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYPGAK 62
           +  AAASS + TR+  +   S   +  ARF FG KKA P K K                 
Sbjct: 5   STAAAASSIMGTRVV-SDISSNSSRFTARFGFGTKKASPKKAKTV--------------- 64

Query: 63  KKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLAKN 122
                  + DRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ++LDSLDQNLAKN
Sbjct: 65  -------ISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKN 124

Query: 123 SAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGIT 182
             G++IGTR E  + KSTPFQPY+EVFGLQRFRECELIHGRWAMLATLGA++VEWLTG+T
Sbjct: 125 LYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVT 184

Query: 183 WQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFD 242
           WQDAGKVELV+GSSYLGQPLPF+++TLIWIEVLVIGYIEFQRNAEL+ EKRLYPGGKFFD
Sbjct: 185 WQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFD 244

Query: 243 PLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII 302
           PLGLA DP KK  LQLAEIKHARLAMV FLGFAVQAA TGKGPLNNWATHLSDPLHTTII
Sbjct: 245 PLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTII 286

Query: 303 DSFSS 308
           D+FSS
Sbjct: 305 DTFSS 286

[Close]

BLAST of Sed0025923 vs. TAIR 10
Match: AT2G40100.1 (light harvesting complex photosystem II )

HSP 1 Score: 381.3 bits (978), Expect = 7.2e-106
Identity = 200/292 (68.49%), Postives = 230/292 (78.77%), Query Frame = 0


Query: 1   MAAATAAASSFI-ATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYP 60
           MA  TAAA+S I   R+ D R G+G+ +    FSFGKKK  P  KK  S++V D      
Sbjct: 1   MATTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKK--SRQVQDD----- 60

Query: 61  GAKKKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNL 120
                       DR +W+PGA  PEWLDGS++GD GFDPFGLGKPAEYLQY+ D LDQNL
Sbjct: 61  -----------GDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNL 120

Query: 121 AKNSAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLT 180
           AKN AGD+IG   E+SE+K TPFQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LT
Sbjct: 121 AKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALT 180

Query: 181 GITWQDAGKVELVEGSSYLGQPLPFTVTTLIWIEVLVIGYIEFQRNAELEPEKRLYPGGK 240
           GI WQDAGKVELVEGSSYLGQPLPF++TTLIWIEVLV+GYIEFQRN+EL+PEKR+YPGG 
Sbjct: 181 GIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG- 240

Query: 241 FFDPLGLAEDPEKKVVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWAT 292
           +FDPLGLA DPEK   L+LAEIKH+RLAMVAFL FA+QAA TGKGP++  AT
Sbjct: 241 YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

[Close]

BLAST of Sed0025923 vs. TAIR 10
Match: AT3G08940.1 (light harvesting complex photosystem II )

HSP 1 Score: 233.4 bits (594), Expect = 2.4e-61
Identity = 124/202 (61.39%), Postives = 143/202 (70.79%), Query Frame = 0


Query: 3   AATAAASSFIATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYPGAK 62
           +  AAASS + TR+  +   S   +  ARF FG KKA P K K                 
Sbjct: 5   STAAAASSIMGTRVV-SDISSNSSRFTARFGFGTKKASPKKAKTV--------------- 64

Query: 63  KKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLAKN 122
                  + DRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ++LDSLDQNLAKN
Sbjct: 65  -------ISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKN 124

Query: 123 SAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGIT 182
             G++IGTR E  + KSTPFQPY+EVFGLQRFRECELIHGRWAMLATLGA++VEWLTG+T
Sbjct: 125 LYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVT 183

Query: 183 WQDAGKVELVEGSSYLGQPLPF 205
           WQDAGKV  +  SS L   L F
Sbjct: 185 WQDAGKVSPLFFSSLLRLCLAF 183

[Close]

BLAST of Sed0025923 vs. TAIR 10
Match: AT2G40100.2 (light harvesting complex photosystem II )

HSP 1 Score: 224.2 bits (570), Expect = 1.5e-58
Identity = 120/191 (62.83%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 1   MAAATAAASSFI-ATRLADARRGSGKGKVEARFSFGKKKAGPAKKKASSKRVPDRPLWYP 60
           MA  TAAA+S I   R+ D R G+G+ +    FSFGKKK  P  KK  S++V D      
Sbjct: 1   MATTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKK--SRQVQDD----- 60

Query: 61  GAKKKASSKRVPDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNL 120
                       DR +W+PGA  PEWLDGS++GD GFDPFGLGKPAEYLQY+ D LDQNL
Sbjct: 61  -----------GDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNL 120

Query: 121 AKNSAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLT 180
           AKN AGD+IG   E+SE+K TPFQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LT
Sbjct: 121 AKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALT 173

Query: 181 GITWQDAGKVE 191
           GI WQDAGKVE
Sbjct: 181 GIAWQDAGKVE 173

The following BLAST results are available for this feature:

BLAST of Sed0025923 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022966541.1	1.5e-142	84.69	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita maxima] >X...	[more]
XP_022931964.1	2.6e-142	84.69	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022151483.1	1.9e-140	83.55	chlorophyll a-b binding protein CP29.1, chloroplastic [Momordica charantia]	[more]
XP_038882769.1	3.5e-139	83.28	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida]	[more]
XP_008449241.1	8.7e-138	82.62	PREDICTED: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucumis m...	[more]

BLAST of Sed0025923 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07473	1.3e-128	75.82	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9XF88	1.3e-123	73.44	Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9S7W1	1.0e-104	68.49	Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q93WD2	3.3e-63	52.51	Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhc...	[more]
Q01667	6.2e-38	41.63	Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Sed0025923 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HPL7	7.4e-143	84.69	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1EVQ5	1.3e-142	84.69	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1DCA5	9.1e-141	83.55	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A5D3BBB3	4.2e-138	82.62	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BMH8	4.2e-138	82.62	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Sed0025923 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01530.1	9.3e-130	75.82	light harvesting complex photosystem II	[more]
AT3G08940.2	9.0e-125	73.44	light harvesting complex photosystem II	[more]
AT2G40100.1	7.2e-106	68.49	light harvesting complex photosystem II	[more]
AT3G08940.1	2.4e-61	61.39	light harvesting complex photosystem II	[more]
AT2G40100.2	1.5e-58	62.83	light harvesting complex photosystem II	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 63..259 e-value: 3.2E-50 score: 170.8
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 57..288 e-value: 7.8E-69 score: 233.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..51
None	No IPR available	PANTHER	PTHR21649:SF71	CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC	coord: 2..288
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 49..286
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 2..288

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025923.1	Sed0025923.1	mRNA
Sed0025923.2	Sed0025923.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding