Sed0025918 (gene) Chayote v1

Overview


Name	Sed0025918
Type	gene
Organism	Sechium edule (Chayote v1)
Description	zinc finger Ran-binding domain-containing protein 2-like
Location	LG08: 5241394 .. 5242126 (+)
RNA-Seq Expression	Sed0025918
Synteny	Sed0025918

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTGGTCAGCAGGAGACTGGATATGCAACGTTTGCCAAAACGTAAATTTCAAGAAAAGAGAAGCATGTCATCGTTGCAGTTACCCCAAGCATGGAGGCCCAGACCCTTCAACTTACAGTTACATCAAGACAGAGGTCTTGGCTGGAGACTGGTACTGCACCGGCATCAACTGTGGAGCTCACAATTACGCCAGCCGCCCGAACTGCTTTAGATGCGGTGCATTTAAGTCCGTCTATCCTGGTGATTATGGCGCCTACGTGATTGGCTCCGATCAATATGGTTCTGATGCAAGCATCCCGCCTGGATGGAAATCTGGAGACTGGGTTTGTCCTAGGTACACACAATACAGTACACTTTACAGTTAAAGTTGATCAAAATTTTAAAGGGGATTGCATCTTCTCAAGTTATTATTGCATGGTTTTTAAGAGACTTGAATGCAGAAAGTAAGAATCTGCATAAATGAATTCCTGCATTATTTTCAGCTAGAGAACTTTAGTTACTTAAAAAATCATGTTGAAACATAATGTTGTATGGTACAGAATGGGATGTGGAGTACACAATTATGCAAGCAGGATGGAGTGTTTTAAATGCAAAATAGCAAGAGATTTCGGTAAGTTTATATCAACTAAAACATTTACATTTGTTATCCTTATCTGCCACTCAAAAAGTGGTTAATAAAGGCGTCATTTGATAATCATTTTGGCCCCGTTTGATAACCATTTGGTTTTT

mRNA sequence

ATGAGCTGGTCAGCAGGAGACTGGATATGCAACGTTTGCCAAAACGTAAATTTCAAGAAAAGAGAAGCATGTCATCGTTGCAGTTACCCCAAGCATGGAGGCCCAGACCCTTCAACTTACAGTTACATCAAGACAGAGGTCTTGGCTGGAGACTGGTACTGCACCGGCATCAACTGTGGAGCTCACAATTACGCCAGCCGCCCGAACTGCTTTAGATGCGGTGCATTTAAGTCCGTCTATCCTGGTGATTATGGCGCCTACGTGATTGGCTCCGATCAATATGGTTCTGATGCAAGCATCCCGCCTGGATGGAAATCTGGAGACTGGGTTTGTCCTAGAATGGGATGTGGAGTACACAATTATGCAAGCAGGATGGAGTGTTTTAAATGCAAAATAGCAAGAGATTTCGGTAAGTTTATATCAACTAAAACATTTACATTTGTTATCCTTATCTGCCACTCAAAAAGTGGTTAATAAAGGCGTCATTTGATAATCATTTTGGCCCCGTTTGATAACCATTTGGTTTTT

Coding sequence (CDS)

ATGAGCTGGTCAGCAGGAGACTGGATATGCAACGTTTGCCAAAACGTAAATTTCAAGAAAAGAGAAGCATGTCATCGTTGCAGTTACCCCAAGCATGGAGGCCCAGACCCTTCAACTTACAGTTACATCAAGACAGAGGTCTTGGCTGGAGACTGGTACTGCACCGGCATCAACTGTGGAGCTCACAATTACGCCAGCCGCCCGAACTGCTTTAGATGCGGTGCATTTAAGTCCGTCTATCCTGGTGATTATGGCGCCTACGTGATTGGCTCCGATCAATATGGTTCTGATGCAAGCATCCCGCCTGGATGGAAATCTGGAGACTGGGTTTGTCCTAGAATGGGATGTGGAGTACACAATTATGCAAGCAGGATGGAGTGTTTTAAATGCAAAATAGCAAGAGATTTCGGTAAGTTTATATCAACTAAAACATTTACATTTGTTATCCTTATCTGCCACTCAAAAAGTGGTTAA

Protein sequence

MSWSAGDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYSYIKTEVLAGDWYCTGINCGAHNYASRPNCFRCGAFKSVYPGDYGAYVIGSDQYGSDASIPPGWKSGDWVCPRMGCGVHNYASRMECFKCKIARDFGKFISTKTFTFVILICHSKSG

Homology

[Close]

BLAST of Sed0025918 vs. NCBI nr
Match: XP_023516205.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo] >XP_023516206.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302.0 bits (772), Expect = 3.0e-78
Identity = 126/137 (91.97%), Postives = 132/137 (96.35%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYSYIKTEVLAGDWYCTGINCG 60
           MSWSAGDWICNVCQNVNFKKREACHRCSYPK+GGPDPSTYSY KTEVLAGDWYCT +NCG
Sbjct: 1   MSWSAGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCTAVNCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYVIGSDQYGSDASIPPGWKSGDWVCPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYGAY++GSDQYGSDASIPPGWKSGDWVCPR+GCG+HN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWVCPRIGCGIHN 120

Query: 121 YASRMECFKCKIARDFG 138
           YASRMECFKCK  R FG
Sbjct: 121 YASRMECFKCKTPRGFG 137

[Close]

BLAST of Sed0025918 vs. NCBI nr
Match: XP_011656267.2 (zinc finger Ran-binding domain-containing protein 2 isoform X1 [Cucumis sativus] >XP_011656275.1 zinc finger Ran-binding domain-containing protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 8.8e-78
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYSYIKTEVLAGDWYCTGINCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPK+GGPDPSTYSY KTE LAGDWYCT ++CG
Sbjct: 1   MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYVIGSDQYGSDASIPPGWKSGDWVCPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYGAY++GSDQYGSDASIPPGWKSGDW+CPRMGCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120

Query: 121 YASRMECFKCKIARDFG 138
           YASRMECFKCK  RDFG
Sbjct: 121 YASRMECFKCKTPRDFG 137

[Close]

BLAST of Sed0025918 vs. NCBI nr
Match: XP_008465020.2 (PREDICTED: uncharacterized protein LOC103502740 isoform X3 [Cucumis melo])

HSP 1 Score: 300.4 bits (768), Expect = 8.8e-78
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYSYIKTEVLAGDWYCTGINCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPK+GGPDPSTYSY KTE LAGDWYCT ++CG
Sbjct: 69  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 128

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYVIGSDQYGSDASIPPGWKSGDWVCPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYGAY++GSDQYGSDASIPPGWKSGDW+CPRMGCGVHN
Sbjct: 129 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 188

Query: 121 YASRMECFKCKIARDFG 138
           YASRMECFKCK  RDFG
Sbjct: 189 YASRMECFKCKTPRDFG 205

[Close]

BLAST of Sed0025918 vs. NCBI nr
Match: XP_008465021.2 (PREDICTED: uncharacterized protein LOC103502740 isoform X2 [Cucumis melo])

HSP 1 Score: 300.4 bits (768), Expect = 8.8e-78
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYSYIKTEVLAGDWYCTGINCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPK+GGPDPSTYSY KTE LAGDWYCT ++CG
Sbjct: 70  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 129

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYVIGSDQYGSDASIPPGWKSGDWVCPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYGAY++GSDQYGSDASIPPGWKSGDW+CPRMGCGVHN
Sbjct: 130 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 189

Query: 121 YASRMECFKCKIARDFG 138
           YASRMECFKCK  RDFG
Sbjct: 190 YASRMECFKCKTPRDFG 206

[Close]

BLAST of Sed0025918 vs. NCBI nr
Match: XP_004150016.3 (zinc finger Ran-binding domain-containing protein 2 isoform X2 [Cucumis sativus] >KAA0046754.1 zinc finger Ran-binding domain-containing protein 2-like isoform X3 [Cucumis melo var. makuwa] >TYK29693.1 zinc finger Ran-binding domain-containing protein 2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 300.4 bits (768), Expect = 8.8e-78
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYSYIKTEVLAGDWYCTGINCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPK+GGPDPSTYSY KTE LAGDWYCT ++CG
Sbjct: 1   MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYVIGSDQYGSDASIPPGWKSGDWVCPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYGAY++GSDQYGSDASIPPGWKSGDW+CPRMGCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120

Query: 121 YASRMECFKCKIARDFG 138
           YASRMECFKCK  RDFG
Sbjct: 121 YASRMECFKCKTPRDFG 137

[Close]

BLAST of Sed0025918 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-09
Identity = 35/130 (26.92%), Postives = 54/130 (41.54%), Query Frame = 0


Query: 6   GDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYS-YIKTEVLAGDWYCTGINCGAHNY 65
           GDW C +C   NF++R +C RCS+P       +T S     +   G+ Y  G +    NY
Sbjct: 345 GDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIANY 404

Query: 66  ASRPNCFRCGAFKSVYPGDYGAYVIGSDQYGSDASIPPGWKSGDWVCPRMGCGVHNYASR 125
               +       +S      G   +              +++GDW C   GCG HN+A  
Sbjct: 405 GGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFAKN 464

Query: 126 MECFKCKIAR 135
           + C +C  +R
Sbjct: 465 VCCLRCGASR 474

[Close]

BLAST of Sed0025918 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.1e-04
Identity = 28/83 (33.73%), Postives = 35/83 (42.17%), Query Frame = 0


Query: 50  GDWYCTGINCGAHNYASRPNCFRCGAFKSVYPG--DYGAYVIGSDQYGSDASIPPGWKSG 109
           GDW C    CG  N+A R +C RCG  K+        G   IG         +   + + 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGL---FSAN 70

Query: 110 DWVCPRMGCGVHNYASRMECFKC 131
           DW C    CG  N+A R EC  C
Sbjct: 71  DWQCKT--CGNVNWARRSECNMC 88

[Close]

BLAST of Sed0025918 vs. ExPASy TrEMBL
Match: A0A5D3E0T0 (Zinc finger Ran-binding domain-containing protein 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00450 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.3e-78
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYSYIKTEVLAGDWYCTGINCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPK+GGPDPSTYSY KTE LAGDWYCT ++CG
Sbjct: 1   MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYVIGSDQYGSDASIPPGWKSGDWVCPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYGAY++GSDQYGSDASIPPGWKSGDW+CPRMGCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120

Query: 121 YASRMECFKCKIARDFG 138
           YASRMECFKCK  RDFG
Sbjct: 121 YASRMECFKCKTPRDFG 137

[Close]

BLAST of Sed0025918 vs. ExPASy TrEMBL
Match: A0A0A0LWE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G306810 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.3e-78
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYSYIKTEVLAGDWYCTGINCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPK+GGPDPSTYSY KTE LAGDWYCT ++CG
Sbjct: 70  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 129

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYVIGSDQYGSDASIPPGWKSGDWVCPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYGAY++GSDQYGSDASIPPGWKSGDW+CPRMGCGVHN
Sbjct: 130 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 189

Query: 121 YASRMECFKCKIARDFG 138
           YASRMECFKCK  RDFG
Sbjct: 190 YASRMECFKCKTPRDFG 206

[Close]

BLAST of Sed0025918 vs. ExPASy TrEMBL
Match: A0A1S3CPF6 (uncharacterized protein LOC103502740 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502740 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.3e-78
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYSYIKTEVLAGDWYCTGINCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPK+GGPDPSTYSY KTE LAGDWYCT ++CG
Sbjct: 69  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 128

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYVIGSDQYGSDASIPPGWKSGDWVCPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYGAY++GSDQYGSDASIPPGWKSGDW+CPRMGCGVHN
Sbjct: 129 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 188

Query: 121 YASRMECFKCKIARDFG 138
           YASRMECFKCK  RDFG
Sbjct: 189 YASRMECFKCKTPRDFG 205

[Close]

BLAST of Sed0025918 vs. ExPASy TrEMBL
Match: A0A1S3CMY6 (uncharacterized protein LOC103502740 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502740 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.3e-78
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYSYIKTEVLAGDWYCTGINCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPK+GGPDPSTYSY KTE LAGDWYCT ++CG
Sbjct: 70  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 129

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYVIGSDQYGSDASIPPGWKSGDWVCPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYGAY++GSDQYGSDASIPPGWKSGDW+CPRMGCGVHN
Sbjct: 130 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 189

Query: 121 YASRMECFKCKIARDFG 138
           YASRMECFKCK  RDFG
Sbjct: 190 YASRMECFKCKTPRDFG 206

[Close]

BLAST of Sed0025918 vs. ExPASy TrEMBL
Match: A0A1S3CNB1 (uncharacterized protein LOC103502740 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502740 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.3e-78
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYSYIKTEVLAGDWYCTGINCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPK+GGPDPSTYSY KTE LAGDWYCT ++CG
Sbjct: 70  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 129

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYVIGSDQYGSDASIPPGWKSGDWVCPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYGAY++GSDQYGSDASIPPGWKSGDW+CPRMGCGVHN
Sbjct: 130 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 189

Query: 121 YASRMECFKCKIARDFG 138
           YASRMECFKCK  RDFG
Sbjct: 190 YASRMECFKCKTPRDFG 206

[Close]

BLAST of Sed0025918 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-55
Identity = 89/139 (64.03%), Postives = 107/139 (76.98%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYSYIKTEVLAGDWYCTGINCG 60
           MSW+ GDW+C  CQ+ NFKKRE+C +C YPK GG D STY Y +TEV+AGDWYC  +NCG
Sbjct: 1   MSWTGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTEVMAGDWYCGALNCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYPGD-YGAYVIGSDQYGSD-ASIPPGWKSGDWVCPRMGCGV 120
           +HNYASR +C+RCG  K  Y    YGA ++    YG+D A+ PPGWK+GDWVCPR+GCGV
Sbjct: 61  SHNYASRTSCYRCGMIKVEYTEQYYGAQMVA---YGNDGAACPPGWKTGDWVCPRVGCGV 120

Query: 121 HNYASRMECFKCKIARDFG 138
           HNYASR ECFKCK  RD+G
Sbjct: 121 HNYASRAECFKCKTTRDYG 136

[Close]

BLAST of Sed0025918 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 135.2 bits (339), Expect = 4.6e-32
Identity = 65/154 (42.21%), Postives = 85/154 (55.19%), Query Frame = 0


Query: 6   GDWICNVCQNVNFKKREACHRC-------------SYPKHGGPDPSTYSYIK-TEVLAGD 65
           GDW C  C ++NF++R++C RC              +   GG   S + +   ++V  GD
Sbjct: 5   GDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDVRPGD 64

Query: 66  WYCTGINCGAHNYASRPNCFRCGAFK-SVYPGDYGAYVIGSDQYGSD--ASIPPG----- 125
           WYCT  NCG HN+ASR  CF+CG FK     G  G  + G   + +D   S  PG     
Sbjct: 65  WYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPGNGGRS 124

Query: 126 -WKSGDWVCPRMGCGVHNYASRMECFKCKIARDF 137
            WKSGDW+C R+GC  HN+ASRMECF+C   RDF
Sbjct: 125 SWKSGDWICTRIGCNEHNFASRMECFRCNAPRDF 158

[Close]

BLAST of Sed0025918 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-29
Identity = 57/159 (35.85%), Postives = 82/159 (51.57%), Query Frame = 0


Query: 6   GDWICNVCQNVNFKKREACHRCSYPKHGG------------PDPSTYSY-IKTEVLAGDW 65
           GDW C +C ++NF++R++C RC  P+ GG            P  S++ +    +V  GDW
Sbjct: 5   GDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVRPGDW 64

Query: 66  YCTGINCGAHNYASRPNCFRCGAFKSVYPGD----------------YGAYVIGSDQYGS 125
           YC   +CG HN+A+R +CF+CGA K  +                    G +  G    G 
Sbjct: 65  YCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGSSSGG 124

Query: 126 DASIPPGWKSGDWVCPRMGCGVHNYASRMECFKCKIARD 136
             +    WKSGDW+CPR GC  HN+ASR ECF+C   ++
Sbjct: 125 GGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163

[Close]

BLAST of Sed0025918 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-10
Identity = 41/139 (29.50%), Postives = 63/139 (45.32%), Query Frame = 0


Query: 3   WSAGDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYSYIKTEVLAGDWYCTGINCGAH 62
           W +GDWIC  C   N+  R  C +C+      P       + +E LA +W    +N G  
Sbjct: 126 WRSGDWICR-CGFHNYSSRIQCKKCN---EIAPLALGTKRLASEALAHEWDSKRLNQGYT 185

Query: 63  NYASRPNCFRCGAFKSVYPGDYGAYVIG---SDQYGSDASIPPG---WKSGDWVCPRMGC 122
           +  ++   +   +F  +  G    + +      Q+ + A +  G   W+ GDW+C    C
Sbjct: 186 SMQTQSAIY--ASFPGMSLGRVSNWQLPLPFLQQHSTPALLGMGVKQWRDGDWMC--TNC 245

Query: 123 GVHNYASRMECFKCKIARD 136
             HNYASR EC +CK  RD
Sbjct: 246 KNHNYASRAECNRCKTTRD 256

[Close]

BLAST of Sed0025918 vs. TAIR 10
Match: AT1G48570.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-08
Identity = 27/68 (39.71%), Postives = 37/68 (54.41%), Query Frame = 0


Query: 6   GDWICNVCQNVNFKKREACHRCSYPKHGGPDPSTYSYIKTEVLAGDWYCTGINCGAHNYA 65
           GDW+C  C  +NF + ++C +C   K  GP  ++   I  E+  GDW CTG  CG  N+A
Sbjct: 338 GDWLCPECSFLNFTRNQSCLKC---KAKGPKKTSMVNI-VEMKKGDWNCTG--CGYMNFA 397

Query: 66  SRPNCFRC 74
           S   C  C
Sbjct: 398 SNKQCREC 399

The following BLAST results are available for this feature:

BLAST of Sed0025918 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516205.1	3.0e-78	91.97	zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. ...	[more]
XP_011656267.2	8.8e-78	91.24	zinc finger Ran-binding domain-containing protein 2 isoform X1 [Cucumis sativus]...	[more]
XP_008465020.2	8.8e-78	91.24	PREDICTED: uncharacterized protein LOC103502740 isoform X3 [Cucumis melo]	[more]
XP_008465021.2	8.8e-78	91.24	PREDICTED: uncharacterized protein LOC103502740 isoform X2 [Cucumis melo]	[more]
XP_004150016.3	8.8e-78	91.24	zinc finger Ran-binding domain-containing protein 2 isoform X2 [Cucumis sativus]...	[more]

BLAST of Sed0025918 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	4.1e-09	26.92	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q5ZLX5	5.1e-04	33.73	Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=...	[more]

BLAST of Sed0025918 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E0T0	4.3e-78	91.24	Zinc finger Ran-binding domain-containing protein 2-like isoform X3 OS=Cucumis m...	[more]
A0A0A0LWE1	4.3e-78	91.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G306810 PE=4 SV=1	[more]
A0A1S3CPF6	4.3e-78	91.24	uncharacterized protein LOC103502740 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CMY6	4.3e-78	91.24	uncharacterized protein LOC103502740 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CNB1	4.3e-78	91.24	uncharacterized protein LOC103502740 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Sed0025918 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26695.1	1.3e-55	64.03	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT3G15680.1	4.6e-32	42.21	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	1.6e-29	35.85	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	1.3e-10	29.50	zinc finger (Ran-binding) family protein	[more]
AT1G48570.1	2.7e-08	39.71	zinc finger (Ran-binding) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 50..76 e-value: 2.4E-4 score: 30.5 coord: 6..30 e-value: 1.6E-5 score: 34.4 coord: 107..133 e-value: 5.6E-6 score: 35.9
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 49..77 e-value: 5.1E-7 score: 28.9 coord: 4..31 e-value: 2.6E-6 score: 26.6 coord: 105..131 e-value: 7.0E-7 score: 28.5
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 109..130
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 52..73
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 8..27
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 105..136 score: 9.495252
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 48..79 score: 8.97581
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 4..33 score: 9.167777
None	No IPR available	GENE3D	4.10.1060.10		coord: 1..35 e-value: 8.2E-11 score: 43.0 coord: 100..135 e-value: 2.3E-11 score: 44.8 coord: 41..79 e-value: 1.9E-10 score: 41.9
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..139
None	No IPR available	PANTHER	PTHR23111:SF41	ZINC FINGER, RANBP2-TYPE-RELATED	coord: 1..139
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..33
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 46..78
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 101..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025918.1	Sed0025918.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding