Sed0025878 (gene) Chayote v1

Overview


Name	Sed0025878
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA polymerase II-associated protein 3 isoform X1
Location	LG11: 3999337 .. 4007002 (-)
RNA-Seq Expression	Sed0025878
Synteny	Sed0025878

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCGACCGGAGCAAGAGGAACTGCAGTCGGCTGCCGGCTCCGACTTGACGCCTCAATCTCCGTTCTCTCTTTCTCCGTCGATTCCTCCGGTCTCCCATGGCCGATTCCTCCGGCAAGCACCGCCGTGATCAGCCTCTGGTATTTCCCTTTCTCCTTACCTGTTGTACTTCAGAGATTAAACCTTTCTTTCTGTACTTCTAGTTTAGGGTTGAGTTCGTATTCGTTGTTTGTGGAGGTCTGCAAGGTCAGTCTCATTGATAGAGTCCCCCTAGTGGCGGCGCAGTGGTCGTATGCTTCCTTGGAAATTAAATTTCACGGCGACCCTCAATTTTGCTTTCACTCATACGACATATCCCGGCGCCACAGGCTACGGACAAGCCAGTGGTGCCTCTACAATTAGAGCACCAAATCTTAAGTTTCCCGGGTCTATTGATAGAAGTTTGGAGTCTCTAACGTAGTCTCCTAGAGGTTTAGGTTCCAAACCGGCCTGTGAACTTAATTGCAAATACTTATTTGTCTGTCCGTCGGACAGACTCGAGTGCCCTATAGGGACTAACTACTATGCCATATGAATGTCGAAAACCTGACATTAGCCGTATGTAACCCCATTGGCCTAAATGGGAACGACTTTGGTCTACAAAAAAGGTAATCCCAATTATAGATACCCCATCGACTCGAGTGCCCTACAAAAAAGGTATCATTGTCTGTGGAAATTAAGCAACTCCATTGGCCTAAATGGGATTGATTAACTGGCTTGCTGTTTGTCGAACATTGGGATTTGATGGGATATGATAATGTGCACTTCTGTTCAATTGTGTTTCGGTGATTTATAAGCTAAATGTATTGAAGTTGGGGTTAGAGATTGTAAACTGACTTACTACTGTGTTTGTGTTGGCCATGAAATTTTTATTCTTGGTGCGTTATTTAGTCAAATGAATGTGTGTGTTTACTGTCTTTTCTTATTGAGATGTGCGTGTTTCGGGCACTTTCTTTTTCTCCAGGATTTCCAGGGATTTTTGAATGACTTGCAGGATTGGGAATTCTCCCTTAAGGGAAAAGACAAGAAGTTGAAGCCGCAGGCCATTGGTGAAGAAAAGGAGGTATTACTCTATCATGCTTACTGCTTGATTAGGAAATGCATGTTGTAGAACAAGAACCTGCTATACTATAATGATATTGGTTTTCTTCTTCCCCTATGTAGCTTTCATACATCAATGAAAGTAATAAAAATAATATTTATACTGGTCTATATGTTATAAGGATGATAGTTAGACCTGACTTTGAGAACTAAGAGGTAATAAGTTCAATCCATGGTGGCCATTCACATGAATTAGTTTCTTACGGGTTTTTTTTGACAAACAAATGTAGTAGAGGGCCAGACAGTTCTCACCTGAGTGGCACGGATACTTATAGATAAAAAAGTGGATGACAGTTATATCTAACTCTTATTAAGTGAGGTGTTTTAATTTTGTTGCAAGTGGGTAGATTATTAATAATTGTTTGATATCATACTATTATGGACTATTTGAGGGGGGCCTTTAAGTGATGTCTTAGCTAACCAGGGTAGAAGGCAGGTGGAAAAAGCTTCACCAGCTGATTACATGAAGCAGTATGATGCAGTTAACCGGCTTTCTAGAAATTTTCAGACTGAACAGAGTTTTGTTGATGCTGCTTCAGAGAAAGAACAGGTAGGGGCAGCATTATTTTGTTTATGTTTTTATGATAGAGACACAATTGGTACAAAGCAATCATGAAACAACTTGACTCTTGACTTCATGGCGTGTGCAATATCTCTTTATATTCCAGGGTAATGAGTATTTTAAGAAAAAGAAGTTTAAAGAAGCTGTTGACTGCTATTCAAGAAGTATTGCTTTGTCACCAACAGCTGTAGCCTTTGCAAATAGGGCCATGGCGTACCTAAAAATCAGAAGGCAAGTTTCAGTCAATAGATACAAAGCTTTCTTTTAATTTGATGCATTGTTACGAAGTATGTTTGTGATATTTGTTTGAAATGAAACATCACACCTGTCTGGGTTTCTTAGTAACGTTCTGCTATAAGCTGCTTTACCAATTAAACAGTGCTCTTGACGCAAACTACGACTATTATATGTGCTAAATTTATTGTGTGCTTTTTGTTATCCTCTATTCCTCTTATTTCCACTTCCCTTAAGTCAGATTTCAGGAGGCTGAGGATGACTGTACAGAGGCCTTAAACTTAGATGATCGATATATTAAAGCTTATTCACGCAGAGCAACAGCTAGAAAGGAACTTGGGAAGGCTAAAGAAGCCTTGGAGGGTATTAAAACAACACATCTTAATTGCACGTGGGTCTTTTTAAGTTTTTTTTATCTATCTGATATATTTGTCTTTGGCTTTGCTGATTGTAGATGCTGAATTTGCCCAGAGGTTGGAACCTAACAACCAAGAGATCAAGAAGCAACATTCTGACCTCAGAGCTCTTGTTGGGAAAGTAAGTTTTGCTGCATTAATATTTCAGATTGTTTTTCTTAAATATCTTGACCTCTCTTGAGCTAGATACTGGTGAATGTGGGAGAGGGAATTACGATATTTCAGATAAGTGAGTATTGTGGCATATTCCAGATTATTTTGTTAAATATCTGAACCTCCCTTTTACTGGTGAATGTGAGAGAGGGAGTTATGATATTTCAGAAGAGTTATGTTCGCAAGATATTTTCATTTAGTTTTTTTTGTACATGCATTATCCTTTAGGCAATTCTTGATAGAGCATCTGGTGCTTCGAAAAGCTCCACAAAAGATAAGGAGACGGTTGGAAATTCCAACTCTGAAGCAAAAATTCAGGACATCCCTACTGTCTCAAGCAACACACCAAGGACAGGATTATCAACATCTCAAGAACGCTTTGATGTAAGGATTTGGATTACTAATTTGTTGTTTCCTACATCCACTATCCTGTATTTCGTAGGGTTAGACTACTATTTTCCTTTGAGAGTAGTCGAGATGCATGAAGTATTGATAAAAAAAATGTTACTCATTTCCTATAGTTTTCAATGAAGATTCAACTGACTGATGTTTTTTTTTTGTACAAGACATTCGGCTTCTCTCTCTTCTTTCTCAAGTTTTGTGGAAACTATATTTTTCTATAATATTAAAAACAATACTGATGTATAGCTACTTTATAACTCCCTTGGCCTGCTCTCTTTTGTAGTACTGTGGTTTAATCTATTCCTTCGTTGAAATACTCAACAGAGAGAAAAATTGCTGATAGTTAATCACTTATCAGTTATACTGCTGGGCTGTAGAGTACTTCTCTGCATTTATATTGAGTTTATTTTCTCAAGTTTACCGAATAAGATGGACTTCTTTTTGCAAGTTTTTGGGTACTTCATTAAACTGTAGTGGTTATCCTGAAACCGGATGTCAGCCATATGATGTTTGAGCTTTTGAACTCTATTTTTAGGAAAATGGCGAGGAAAAATCCGTCAAGGCATCTGCACGTTTAGAGGTAACTGAGGACAGAAGTACAGGAGCTGAACTCAGATACAAAAGAGAGGCAAAAAATGGTTTTCACATCGACCCAAGTTCACATTTGGGGGCAATAGAGGTCTCTCTTAAGATCTGTTTAAACTATTTTTTATGCTTTTTACACTGTCTTTTAGTTGTTGGTACTTGGTTCCCATTTTTATGTTAGCATATACCAATTTTTTGTCCAAAAGATTCACAAATACGATTGCTGCAATAGTTTCTTGATTGCGAACCGTTGCAGGATTCATCTTAAAAATGTTATTGAAATCAAGTAGAAGTTTGCTTATTTTCCTAATTGGTTTGTTTCCATCACATTCCTTGCTTTGTGAAGTGAGCTCATTCTCTTTACTAAAGACAAGGAAAGTGTAAAAGAAGAAATGAAGTTCCCATGCTTATATTGACCCTTTAAAGAGCCCGTGATCTTTGATGAGAAGTTCAGAATTCACATTCTGATCTTGACTCATTTTTGTTAAAAATTCATGGCCTATTATAATAATGAAGGCATGCTTGAGTATAGTATAGTATAGGATTGAACCATAGGAATTTGAATCATGGAAGAGGCTCAAGTTGATTAATTAAGGTGACTTTAAGTTTAAGTAAGTCTCTCGATTGCTAGACTTGAAAAGTGTTTTCTCAAGCCTATCAATTACAACTGAGTAGGAGATTTGTAGCTCTAAAATTGACTGATGTAGGCCAGATATAACCATTTCTCTCACATGGCTGATATCAGAGTCAGTGCCAACCATACATTTATTCAGGAATTGGGACTAGGAACAAGAGTGCTCTCTTTCGGATTTTCTTGAGGCATTACTCGAAGGCAATAATCTCTTACTGACACGCTCAAGCCTTATTCAAGACTCAAAAGCCAAGAGTTCATGATTAGTCAAATTGAAGCTCGTCCATTTAAAGTTCTACAATTTTAAAAGAACTAAATTATATCAGAGCCGGATGAGGAGACGAAAGGCTTTGATACGTTTTGGGCCTTGGCATTATTAAGGAATAATATAGGGGAATGTTAGCAATTACTTGAGGAGTAATTTAGGGTTTTGTTATAAATAGGAGATGTTAGAGTAGAGTTTAGGCATCCAAATATTGAGTGATTGAGTGATTATCTCAGGGCTCATAGAGAGTATTCTCTTGAGAGGGGAGGTTCCAAGACCTATCAAATCTTGGTTTATCTTGTATTCTTTTACCTTTTTATATTAATCTAGATCCGGGATGATATTAAGCTTCTACTTAACCATCCTCTCACCTTTTATCAATTTGTGAACCATGTCATCAGCTCATGCTTGTTTGGATGCTATAACCCCATATGTATTTTTGCCTCTAAGTCTGTATGACACAATGATTTCTAAATTCTTTTGTTTTCACACCTGAATATTTTCACAGAGAAATCATGTTCCGAGAAAGCAGGAGCTGAAGCCTTCGGTCCAGGAACTTGCTTCTCGGGCAGCTTCTAGAAGTATGGTTGAAGCTGCAAAAAACATTATAGCCCCTGCTACTGCCTATCAGTTTGAAGTTTCTTGGCGAGGATTCTCAGGTGATCATGCACTGCAGGCTTGTCTTTTAAAGGTATGCGATACGATATCCACAGCCAATACTGTCAATGATGTTGTGTTCATTTAGCTATCCACGATAGTATGAATTTATGGTAATTTCCTATAAATTAAAACTGTTGTCTGGTAAATAATAGAAGTGCGGCGCCGTAGAATTCTGTGTTAGTCGGTCAGTCAATTGTTTGATCTCTTAAAATCATATGATAACATCAACTTGTTTTTCAATGGATGTGCTCTAGAGGCCACTTGCTGAGTGTATGAAATCACATGCTGGTTTTGAGTTTTGACTACCTGATATTGTAGGTCTTATAGGTTTCTTCCCATTTTGACTACCTGTTTTTCAATGGATGTGCTCTAGAGGCCACTTGCTGAGTGTATGAAATCACATGCTGGTTTTGAGTTTTGACTACCTGATATTGTAGGTCTTATAGGTTTCTTCCCATTTTCTATCGGTTGGATCATCAATTGGCTGATATATGTGGGTATATAAAAACATTCTTTTCATATCTAAGGTAGCGAGAACTCTGCATTTTGGCATGGCATTGTCAGTAAAAAACGTCTCTATGATAAATGCGTTTATAATGGACACCCATTTAAAAGAGAAAAGAAAGCTCTATGGAGAATATTCTTATCGGCATTTTGGTGGTCTATTTTTGGAGAGTCCGAAATGACTTGGTTTTCACAGAGGAAAATCGGTTGAAAGGAAATATCTTGGAATCTATCACTATATTATATATTACACGGGCTCATCAAATTCCCCATTCAAAGATTATAGCCTTTCTACTTTGCTAACTCATTGGCAAAGTTTTTTGTAATATTTTGTTTTTCTACAAGTAACTTTTCATACATCAATGTAAGTTGTCTACCCCCAAGGGGGCACAGTGGTTGAAGACTTGGGCTTTAAGGGTATGCTCTCCTTAAGGTTCCAAATTCGAGACTCAACTGTGACATTATTCCTTCAATGTCTCTTGGTGCCTGGCCTAGGGACAGGCGTGGCTACCCTTGTTTCAAAAAAAATGTAAGTTATCTGTTTCTTATAAAAAAAACAAAAACAGTAACTAAATGCGTTGGGAAATCCATATAGCTCACTATAGTTGTCATTTTATTCTGTTCCTTTCCACAGTTTTTCCTTTTTGTTTTTTTTAACGCAGTTGTTTTTCTCATTAGGCCATCTCTCCAGCCAACTTGCCTCAGATATTCAAAAATGCACTAACAGCTCCAATTTTAATAGACATTGTTAAGTGCGTGGCAACCTTTTTCACGTAAGTTGAAATTTTCTAACTTGTCCTAAGGTAACATTTAGAATATGATTTAAAACATCAATGGTTAACAGGCCATACTGGCTATATCAATTTGCAGTGAAGAGATGACTTTGGCTATTAGTTTCTTAGAAAATTTAGCTAAGGTCCCAAGATTCAGCATACTCATGATGTGTCTTCCATCCGATGAGAAGTCTGGTAAGTTATAAAACCCTTACCTCTTTTCACTCTTCTTGCATGGTAACATTCATTTAGCATAACTTTCTCTATGAGGTCCCAGGTTCGAAATCCACGAGTGAGTTTAATTGTAAAATTCCTTATTGTCTCCTGGGTTCGAGCCTTGGATGGGTGCGGATGCCCCCGGGTATGTAGTGGAGCTAAGCTCCGATTTTTTGTAATAAAAAAAGTGTTAACTTTTTCCTAATATTTCTAACCTTCATGGTTGGAAGTTTAGCAATTACATTTGCAACCAAACTTATTTTGATAAAAGAACTTTGTTAAGCTAAGATTGATTTGGAGTATTGTAGTCGTTGAATCTGAAGAGGAATGCATTTTGTTACTCCTCTTTCTCTATGATATCAACCAACAATATCTTATCCACACAGCCCCAAATAGTATCAGAAATCTGGAGCTTAGCTTATCCTGGCCGAGTGTTTTAGTTATTTGTACACTAATTTTAAAGCTTTGTGAAACAGATCTTCTCAAGATTTGGGATGAAGTATTTTGTGATGAAGCTGTTCCGATCGAATGCGCAGAAACGCTTGATAGCTTGCGTTCAAAGTACTTCCTTAAACCATGAGAATAAGCTCTATGCCTTTAAATTCTGCCTCTCGTAGGTCAACATGCTGCTTATCTTCAGTATAAAGTACTCAATGACTTCTCTGTTTTTGGGGTCACAATTTGGCATGTTTGACTTCTCGAACTCTTGCTTTGAAGTTTAATGTTATATAAAATGTCCCCTCTCTAGTACAATCTAACTTTCCATTCTCTTTTATTATAACCTTATAAATATGCTTGAAAATGATCAGAATCTGCTAATGGACGAATTCTCGATGACATTCTGAACTTCGAACTCGAGGATATAATTGTACAACCTTGGACAAACATCAAAGTTTTCATGACAAGAAGAATAAGGTAACTAGTTTGTATATTGACTATCCCTGGGTCTACTTATCCAAGATTTAATGTTCTGCAAGTTACTTAGATAACTTTATGTAGTAGAGTGGGATGTTTGATGGAAGTTAGTTAACTATATGTAGTAGAGTCGAATGTATGATTGAAGTCACTAGGTGTGTTTGAAGCAACGGCTGAGTTATTTTAAAGTGAGTTATTAATAATTATAAAC

mRNA sequence

ACCCGACCGGAGCAAGAGGAACTGCAGTCGGCTGCCGGCTCCGACTTGACGCCTCAATCTCCGTTCTCTCTTTCTCCGTCGATTCCTCCGGTCTCCCATGGCCGATTCCTCCGGCAAGCACCGCCGTGATCAGCCTCTGGATTTCCAGGGATTTTTGAATGACTTGCAGGATTGGGAATTCTCCCTTAAGGGAAAAGACAAGAAGTTGAAGCCGCAGGCCATTGGTGAAGAAAAGGAGGGTAGAAGGCAGGTGGAAAAAGCTTCACCAGCTGATTACATGAAGCAGTATGATGCAGTTAACCGGCTTTCTAGAAATTTTCAGACTGAACAGAGTTTTGTTGATGCTGCTTCAGAGAAAGAACAGGGTAATGAGTATTTTAAGAAAAAGAAGTTTAAAGAAGCTGTTGACTGCTATTCAAGAAGTATTGCTTTGTCACCAACAGCTGTAGCCTTTGCAAATAGGGCCATGGCGTACCTAAAAATCAGAAGATTTCAGGAGGCTGAGGATGACTGTACAGAGGCCTTAAACTTAGATGATCGATATATTAAAGCTTATTCACGCAGAGCAACAGCTAGAAAGGAACTTGGGAAGGCTAAAGAAGCCTTGGAGGATGCTGAATTTGCCCAGAGGTTGGAACCTAACAACCAAGAGATCAAGAAGCAACATTCTGACCTCAGAGCTCTTGTTGGGAAAGCAATTCTTGATAGAGCATCTGGTGCTTCGAAAAGCTCCACAAAAGATAAGGAGACGGTTGGAAATTCCAACTCTGAAGCAAAAATTCAGGACATCCCTACTGTCTCAAGCAACACACCAAGGACAGGATTATCAACATCTCAAGAACGCTTTGATGAAAATGGCGAGGAAAAATCCGTCAAGGCATCTGCACGTTTAGAGGTAACTGAGGACAGAAGTACAGGAGCTGAACTCAGATACAAAAGAGAGGCAAAAAATGGTTTTCACATCGACCCAAGTTCACATTTGGGGGCAATAGAGAGAAATCATGTTCCGAGAAAGCAGGAGCTGAAGCCTTCGGTCCAGGAACTTGCTTCTCGGGCAGCTTCTAGAAGTATGGTTGAAGCTGCAAAAAACATTATAGCCCCTGCTACTGCCTATCAGTTTGAAGTTTCTTGGCGAGGATTCTCAGGTGATCATGCACTGCAGGCTTGTCTTTTAAAGGCCATCTCTCCAGCCAACTTGCCTCAGATATTCAAAAATGCACTAACAGCTCCAATTTTAATAGACATTGTTAAGTGCGTGGCAACCTTTTTCACTGAAGAGATGACTTTGGCTATTAGTTTCTTAGAAAATTTAGCTAAGGTCCCAAGATTCAGCATACTCATGATGTGTCTTCCATCCGATGAGAAGTCTGATCTTCTCAAGATTTGGGATGAAGTATTTTGTGATGAAGCTGTTCCGATCGAATGCGCAGAAACGCTTGATAGCTTGCGTTCAAAAATCTGCTAATGGACGAATTCTCGATGACATTCTGAACTTCGAACTCGAGGATATAATTGTACAACCTTGGACAAACATCAAAGTTTTCATGACAAGAAGAATAAGGTAACTAGTTTGTATATTGACTATCCCTGGGTCTACTTATCCAAGATTTAATGTTCTGCAAGTTACTTAGATAACTTTATGTAGTAGAGTGGGATGTTTGATGGAAGTTAGTTAACTATATGTAGTAGAGTCGAATGTATGATTGAAGTCACTAGGTGTGTTTGAAGCAACGGCTGAGTTATTTTAAAGTGAGTTATTAATAATTATAAAC

Coding sequence (CDS)

ATGGCCGATTCCTCCGGCAAGCACCGCCGTGATCAGCCTCTGGATTTCCAGGGATTTTTGAATGACTTGCAGGATTGGGAATTCTCCCTTAAGGGAAAAGACAAGAAGTTGAAGCCGCAGGCCATTGGTGAAGAAAAGGAGGGTAGAAGGCAGGTGGAAAAAGCTTCACCAGCTGATTACATGAAGCAGTATGATGCAGTTAACCGGCTTTCTAGAAATTTTCAGACTGAACAGAGTTTTGTTGATGCTGCTTCAGAGAAAGAACAGGGTAATGAGTATTTTAAGAAAAAGAAGTTTAAAGAAGCTGTTGACTGCTATTCAAGAAGTATTGCTTTGTCACCAACAGCTGTAGCCTTTGCAAATAGGGCCATGGCGTACCTAAAAATCAGAAGATTTCAGGAGGCTGAGGATGACTGTACAGAGGCCTTAAACTTAGATGATCGATATATTAAAGCTTATTCACGCAGAGCAACAGCTAGAAAGGAACTTGGGAAGGCTAAAGAAGCCTTGGAGGATGCTGAATTTGCCCAGAGGTTGGAACCTAACAACCAAGAGATCAAGAAGCAACATTCTGACCTCAGAGCTCTTGTTGGGAAAGCAATTCTTGATAGAGCATCTGGTGCTTCGAAAAGCTCCACAAAAGATAAGGAGACGGTTGGAAATTCCAACTCTGAAGCAAAAATTCAGGACATCCCTACTGTCTCAAGCAACACACCAAGGACAGGATTATCAACATCTCAAGAACGCTTTGATGAAAATGGCGAGGAAAAATCCGTCAAGGCATCTGCACGTTTAGAGGTAACTGAGGACAGAAGTACAGGAGCTGAACTCAGATACAAAAGAGAGGCAAAAAATGGTTTTCACATCGACCCAAGTTCACATTTGGGGGCAATAGAGAGAAATCATGTTCCGAGAAAGCAGGAGCTGAAGCCTTCGGTCCAGGAACTTGCTTCTCGGGCAGCTTCTAGAAGTATGGTTGAAGCTGCAAAAAACATTATAGCCCCTGCTACTGCCTATCAGTTTGAAGTTTCTTGGCGAGGATTCTCAGGTGATCATGCACTGCAGGCTTGTCTTTTAAAGGCCATCTCTCCAGCCAACTTGCCTCAGATATTCAAAAATGCACTAACAGCTCCAATTTTAATAGACATTGTTAAGTGCGTGGCAACCTTTTTCACTGAAGAGATGACTTTGGCTATTAGTTTCTTAGAAAATTTAGCTAAGGTCCCAAGATTCAGCATACTCATGATGTGTCTTCCATCCGATGAGAAGTCTGATCTTCTCAAGATTTGGGATGAAGTATTTTGTGATGAAGCTGTTCCGATCGAATGCGCAGAAACGCTTGATAGCTTGCGTTCAAAAATCTGCTAA

Protein sequence

MADSSGKHRRDQPLDFQGFLNDLQDWEFSLKGKDKKLKPQAIGEEKEGRRQVEKASPADYMKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHSDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSSNTPRTGLSTSQERFDENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHIDPSSHLGAIERNHVPRKQELKPSVQELASRAASRSMVEAAKNIIAPATAYQFEVSWRGFSGDHALQACLLKAISPANLPQIFKNALTAPILIDIVKCVATFFTEEMTLAISFLENLAKVPRFSILMMCLPSDEKSDLLKIWDEVFCDEAVPIECAETLDSLRSKIC

Homology

[Close]

BLAST of Sed0025878 vs. NCBI nr
Match: KAG7021040.1 (RNA polymerase II-associated protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 731.5 bits (1887), Expect = 4.5e-207
Identity = 388/452 (85.84%), Postives = 413/452 (91.37%), Query Frame = 0


Query: 1   MADSSGKHRRDQPLDFQGFLNDLQDWEFSLKGKDKKLKPQAIGEEKEGRRQVEKASPADY 60
           MADSSGKH RDQPLDFQGFLNDLQDWE SL G+DKKLKP AI +EKEG RQ  KA+ ADY
Sbjct: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAADY 60

Query: 61  MKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPTAVAFA 120
           MK YDAVN LS    TEQSFVDAASEKEQGNEYFK+KKFKEA+ CYSRSIALSPTAVAFA
Sbjct: 61  MKHYDAVNSLSTKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPTAVAFA 120

Query: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
           NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180

Query: 181 PNNQEIKKQHSDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSSNTPR 240
           PNNQEIKKQH++LRA VGKAIL++ASGAS+SSTK+K+ VG S+SEAKIQDIP VSS+T R
Sbjct: 181 PNNQEIKKQHAELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAKIQDIPPVSSSTLR 240

Query: 241 TGLSTSQERFDENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHIDPSSHLGAIER 300
           +GLS +QE  +ENG EK+VK SARLE TE RSTGAE+RYKREA NG H DP+S+LGA+ER
Sbjct: 241 SGLSAAQEHVEENGGEKAVKESARLEGTEGRSTGAEIRYKREATNGVHKDPNSNLGALER 300

Query: 301 NHVPRKQELKPSVQELASRAASRSMVEAAKNIIAPATAYQFEVSWRGFSGDHALQACLLK 360
           NHV RKQELKPSVQELASRAASRSMVEAAKNI+AP TAYQFEVSWRGFSGD ALQA LLK
Sbjct: 301 NHVSRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQARLLK 360

Query: 361 AISPANLPQIFKNALTAPILIDIVKCVATFFTEEMTLAISFLENLAKVPRFSILMMCLPS 420
           AISPA LPQIFKNAL+APILIDIVKCVATFFTEEM LAISFLENLAKVPRFSILMMCLPS
Sbjct: 361 AISPAKLPQIFKNALSAPILIDIVKCVATFFTEEMALAISFLENLAKVPRFSILMMCLPS 420

Query: 421 DEKSDLLKIWDEVFCDEAVPIECAETLDSLRS 453
           +EKSDLLKIWDEVFCDEAVPIE AE LDSLRS
Sbjct: 421 NEKSDLLKIWDEVFCDEAVPIEYAEMLDSLRS 452

[Close]

BLAST of Sed0025878 vs. NCBI nr
Match: XP_022937809.1 (RNA polymerase II-associated protein 3 isoform X1 [Cucurbita moschata])

HSP 1 Score: 730.3 bits (1884), Expect = 1.0e-206
Identity = 387/453 (85.43%), Postives = 412/453 (90.95%), Query Frame = 0


Query: 1   MADSSGKHRRDQPLDFQGFLNDLQDWEFSLKGKDKKLKPQAIGEEKEGRRQVEKASPADY 60
           MADSSGKH RDQPLDFQGFLNDLQDWE SL G+DKKLKP AI +EKEG RQ  KA+ ADY
Sbjct: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAADY 60

Query: 61  MKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPTAVAFA 120
           MK YDAVN LS    TEQSFVDAASEKEQGNEYFK+KKFKEA+ CYSRSIALSPTAVAFA
Sbjct: 61  MKHYDAVNSLSTKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPTAVAFA 120

Query: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
           NRAMAYLKIRRFQEAEDDCTEALN DDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 121 NRAMAYLKIRRFQEAEDDCTEALNFDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180

Query: 181 PNNQEIKKQHSDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSSNTPR 240
           PNNQEIKKQH++LRA VGKAIL++ASGAS+SSTK+K+ VG S+SEAKIQDIP VSS+T R
Sbjct: 181 PNNQEIKKQHAELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAKIQDIPPVSSSTLR 240

Query: 241 TGLSTSQERFDENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHIDPSSHLGAIER 300
           +GLS +QE  +ENG EK+VK SARLE TE RSTGAE+RYKREA NG H DP+S+LGA+ER
Sbjct: 241 SGLSAAQEHVEENGGEKAVKESARLEGTEGRSTGAEIRYKREATNGVHKDPNSNLGALER 300

Query: 301 NHVPRKQELKPSVQELASRAASRSMVEAAKNIIAPATAYQFEVSWRGFSGDHALQACLLK 360
           NHV RKQELKPSVQELASRAASRSMVEAAKNI+AP TAYQFEVSWRGFSGD ALQA LLK
Sbjct: 301 NHVSRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQARLLK 360

Query: 361 AISPANLPQIFKNALTAPILIDIVKCVATFFTEEMTLAISFLENLAKVPRFSILMMCLPS 420
           AISPA LPQIFKNAL+APILID VKCVATFFTEEM LAISFLENLAKVPRFSILMMCLPS
Sbjct: 361 AISPAKLPQIFKNALSAPILIDTVKCVATFFTEEMALAISFLENLAKVPRFSILMMCLPS 420

Query: 421 DEKSDLLKIWDEVFCDEAVPIECAETLDSLRSK 454
           +EKSDLLKIWDEVFCDEAVPIE AE LDSLRSK
Sbjct: 421 NEKSDLLKIWDEVFCDEAVPIEYAEMLDSLRSK 453

[Close]

BLAST of Sed0025878 vs. NCBI nr
Match: XP_038890655.1 (RNA polymerase II-associated protein 3 isoform X3 [Benincasa hispida])

HSP 1 Score: 730.3 bits (1884), Expect = 1.0e-206
Identity = 384/453 (84.77%), Postives = 411/453 (90.73%), Query Frame = 0


Query: 1   MADSSGKHRRDQPLDFQGFLNDLQDWEFSLKGKDKKLKPQAIGEEKEGRRQVEKASPADY 60
           MADSSGKH RDQP+DFQGFLNDLQDWE S KGKDKKLKPQAI +EKEGRRQ EKAS ADY
Sbjct: 1   MADSSGKHGRDQPMDFQGFLNDLQDWELSFKGKDKKLKPQAISKEKEGRRQTEKASAADY 60

Query: 61  MKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPTAVAFA 120
           +K YDAVNRLSRNFQT+QSFVDAASEKEQGNEYFK+KKFKEA+DCYSRSIALSPTAVAFA
Sbjct: 61  LKHYDAVNRLSRNFQTDQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 120

Query: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
           NRAMAYLKIRR+QEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDA+FAQRLE
Sbjct: 121 NRAMAYLKIRRYQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDADFAQRLE 180

Query: 181 PNNQEIKKQHSDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSSNTPR 240
           P+NQEIKKQH++LRA VGKAIL++ASGAS+SSTKDKETV  S+SEAKI+DIP VSS+TPR
Sbjct: 181 PHNQEIKKQHAELRAFVGKAILEKASGASRSSTKDKETVRKSDSEAKIKDIPPVSSSTPR 240

Query: 241 TGLSTSQERFDENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHIDPSSHLGAIER 300
           TGLS ++ER DENG E + K SA LE  EDRSTGAE+ YK+ A NGFH D SS+ G +ER
Sbjct: 241 TGLSAARERVDENGGENAAKTSAYLEENEDRSTGAEIAYKKVATNGFHKDSSSYAGELER 300

Query: 301 NHVPRKQELKPSVQELASRAASRSMVEAAKNIIAPATAYQFEVSWRGFSGDHALQACLLK 360
           + VPRKQELKPSVQE AS AASRSMVEAAKNIIAP TAYQFEVSWRGFSGD  LQA LLK
Sbjct: 301 DCVPRKQELKPSVQEFASLAASRSMVEAAKNIIAPTTAYQFEVSWRGFSGDRGLQARLLK 360

Query: 361 AISPANLPQIFKNALTAPILIDIVKCVATFFTEEMTLAISFLENLAKVPRFSILMMCLPS 420
           AI+PA LPQIFKNALTAPIL+DIVKCVA FFTEE  LAISFLENLAKVPRFSILMMCLPS
Sbjct: 361 AIAPAKLPQIFKNALTAPILVDIVKCVAMFFTEEPALAISFLENLAKVPRFSILMMCLPS 420

Query: 421 DEKSDLLKIWDEVFCDEAVPIECAETLDSLRSK 454
            EK DLLKIWDEVFCDEAVPIE AE LDSLRSK
Sbjct: 421 SEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSK 453

[Close]

BLAST of Sed0025878 vs. NCBI nr
Match: XP_022965718.1 (RNA polymerase II-associated protein 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 727.6 bits (1877), Expect = 6.5e-206
Identity = 385/453 (84.99%), Postives = 412/453 (90.95%), Query Frame = 0


Query: 1   MADSSGKHRRDQPLDFQGFLNDLQDWEFSLKGKDKKLKPQAIGEEKEGRRQVEKASPADY 60
           MADSSGKH RDQPLDFQGFLNDLQDWE SL G+DKKLKP AI +EKEG RQ  KA+ ADY
Sbjct: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAADY 60

Query: 61  MKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPTAVAFA 120
           +K YDA+N LS     EQSFVDAASEKEQGNEYFK+KKFKEA+ CYSRSIALSPTAVAFA
Sbjct: 61  VKHYDAINSLSTKSHNEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPTAVAFA 120

Query: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
           NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180

Query: 181 PNNQEIKKQHSDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSSNTPR 240
           PNNQEIKKQH++LRA VGKAIL++ASGAS+SSTKDK+ VG S+SEAKIQDIP VSS+T R
Sbjct: 181 PNNQEIKKQHAELRAFVGKAILEKASGASRSSTKDKKMVGKSDSEAKIQDIPPVSSSTLR 240

Query: 241 TGLSTSQERFDENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHIDPSSHLGAIER 300
           +GLS +QE  +ENG EK+VK SARLE TE RSTGAE+RYKREA NG H DP+S+LGA+ER
Sbjct: 241 SGLSAAQEHVEENGGEKAVKESARLEGTEGRSTGAEIRYKREATNGVHKDPNSNLGALER 300

Query: 301 NHVPRKQELKPSVQELASRAASRSMVEAAKNIIAPATAYQFEVSWRGFSGDHALQACLLK 360
           NHV RKQELKPSVQELASRAASRSMVEAAKNI+AP TAYQFEVSWRGFSGD ALQA LLK
Sbjct: 301 NHVSRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQARLLK 360

Query: 361 AISPANLPQIFKNALTAPILIDIVKCVATFFTEEMTLAISFLENLAKVPRFSILMMCLPS 420
           AISPA LPQIFKNAL+APILIDIVKCVATFFTEEM LAISFLENLAKVPRFSILMMCLPS
Sbjct: 361 AISPAKLPQIFKNALSAPILIDIVKCVATFFTEEMALAISFLENLAKVPRFSILMMCLPS 420

Query: 421 DEKSDLLKIWDEVFCDEAVPIECAETLDSLRSK 454
           +EK DLLKIWDEVFCDEAVPIE AE LDSLRS+
Sbjct: 421 NEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSE 453

[Close]

BLAST of Sed0025878 vs. NCBI nr
Match: XP_038890654.1 (RNA polymerase II-associated protein 3 isoform X2 [Benincasa hispida])

HSP 1 Score: 725.3 bits (1871), Expect = 3.2e-205
Identity = 384/455 (84.40%), Postives = 411/455 (90.33%), Query Frame = 0


Query: 1   MADSSGKHRRDQPLDFQGFLNDLQDWEFSLKGKDKKLKPQAIGEEKEGRRQVEKASPADY 60
           MADSSGKH RDQP+DFQGFLNDLQDWE S KGKDKKLKPQAI +EKEGRRQ EKAS ADY
Sbjct: 1   MADSSGKHGRDQPMDFQGFLNDLQDWELSFKGKDKKLKPQAISKEKEGRRQTEKASAADY 60

Query: 61  MKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPTAVAFA 120
           +K YDAVNRLSRNFQT+QSFVDAASEKEQGNEYFK+KKFKEA+DCYSRSIALSPTAVAFA
Sbjct: 61  LKHYDAVNRLSRNFQTDQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 120

Query: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
           NRAMAYLKIRR+QEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDA+FAQRLE
Sbjct: 121 NRAMAYLKIRRYQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDADFAQRLE 180

Query: 181 PNNQEIKKQHSDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSSNTPR 240
           P+NQEIKKQH++LRA VGKAIL++ASGAS+SSTKDKETV  S+SEAKI+DIP VSS+TPR
Sbjct: 181 PHNQEIKKQHAELRAFVGKAILEKASGASRSSTKDKETVRKSDSEAKIKDIPPVSSSTPR 240

Query: 241 TGLSTSQERFD--ENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHIDPSSHLGAI 300
           TGLS ++ER D  ENG E + K SA LE  EDRSTGAE+ YK+ A NGFH D SS+ G +
Sbjct: 241 TGLSAARERVDVKENGGENAAKTSAYLEENEDRSTGAEIAYKKVATNGFHKDSSSYAGEL 300

Query: 301 ERNHVPRKQELKPSVQELASRAASRSMVEAAKNIIAPATAYQFEVSWRGFSGDHALQACL 360
           ER+ VPRKQELKPSVQE AS AASRSMVEAAKNIIAP TAYQFEVSWRGFSGD  LQA L
Sbjct: 301 ERDCVPRKQELKPSVQEFASLAASRSMVEAAKNIIAPTTAYQFEVSWRGFSGDRGLQARL 360

Query: 361 LKAISPANLPQIFKNALTAPILIDIVKCVATFFTEEMTLAISFLENLAKVPRFSILMMCL 420
           LKAI+PA LPQIFKNALTAPIL+DIVKCVA FFTEE  LAISFLENLAKVPRFSILMMCL
Sbjct: 361 LKAIAPAKLPQIFKNALTAPILVDIVKCVAMFFTEEPALAISFLENLAKVPRFSILMMCL 420

Query: 421 PSDEKSDLLKIWDEVFCDEAVPIECAETLDSLRSK 454
           PS EK DLLKIWDEVFCDEAVPIE AE LDSLRSK
Sbjct: 421 PSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSK 455

[Close]

BLAST of Sed0025878 vs. ExPASy Swiss-Prot
Match: Q5ZKQ3 (RNA polymerase II-associated protein 3 OS=Gallus gallus OX=9031 GN=RPAP3 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.6e-27
Identity = 129/439 (29.38%), Postives = 211/439 (48.06%), Query Frame = 0


Query: 15  DFQGFLND------LQDWEFSLKGKDKKLKPQAIGEEKEGRRQVEKASPADYMKQYDAVN 74
           +FQG   D      L    +  K + KK++ QA+  E   +++ E+A  ++  +      
Sbjct: 216 NFQGAKEDYEKVLELDANNYEAKNELKKIE-QALSSESSEQKEFEEAVRSELTENE---- 275

Query: 75  RLSRNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPT-AVAFANRAMAYL 134
              R  + EQ    A +EK+ GN YFK+ K++ A++CY+R IA   T A+  ANRAMAYL
Sbjct: 276 --RRCIEEEQLKQKAVTEKDLGNGYFKEGKYEAAIECYTRGIAADGTNALLPANRAMAYL 335

Query: 135 KIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIK 194
           KI++++EAE+DCT+AL LD  Y KA++RR  AR  LGK KEA++D E   +LEP N++  
Sbjct: 336 KIQKYEEAENDCTQALLLDASYSKAFARRGAARVALGKLKEAMQDFEAVLKLEPGNKQAI 395

Query: 195 KQHSDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSSNTPRTGLST-- 254
            + + +R  +          A K  +  +E       E++I++I  ++ N P    ST  
Sbjct: 396 NELTKIRNEL----------AEKEQSCHEEYPAVLIKESEIKNIVKLTHN-PLNLKSTKP 455

Query: 255 ----SQERFDE---NGEEKSV-------KASARLEVTE-----DRSTGAELRYKREAKNG 314
               + E  D+   N +  S        K S  +E TE     D+ T  ++   ++ K  
Sbjct: 456 LRRIAVEEVDDDVLNSDFSSSTSLVNNWKNSVNIETTENLDQDDQLTSMDIPKAKQLKIE 515

Query: 315 FHIDPSSHLGAIERNHVPRKQELKPSVQELASRAASRSMVEAAKNIIAPATAYQFEVSWR 374
              D SS         V     L PS+ +   R    S   A+     PA ++Q E  +R
Sbjct: 516 EITDVSSPQLPAGAKGV--SSVLHPSMNKQIERENKASFRSASPVPAIPANSFQLESDFR 575

Query: 375 GFSGDHALQACLLKAISPANLPQIFKNALTAPILIDIVKCVATFF--TEEMTLAISFLEN 424
                       LK I P+  P++F+ +L   +   I++ +  F+   EE +L +  L+ 
Sbjct: 576 KLKDCPEKMYLYLKQIEPSIYPKLFQKSLDPDLFNQILRILHDFYIEKEEPSLILEILQR 634

[Close]

BLAST of Sed0025878 vs. ExPASy Swiss-Prot
Match: Q9D706 (RNA polymerase II-associated protein 3 OS=Mus musculus OX=10090 GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-24
Identity = 106/369 (28.73%), Postives = 178/369 (48.24%), Query Frame = 0


Query: 77  EQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPT-AVAFANRAMAYLKIRRFQEA 136
           +Q    A +EK+ GN +FK+ K+++A++CY+R IA   T A+  ANRAMAYLKI+R++EA
Sbjct: 278 QQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEA 337

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQE---------- 196
           E DCT+A+ LD  Y KA++RR TAR  LGK  EA +D E    LEP N++          
Sbjct: 338 ERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKK 397

Query: 197 --IKKQH-------SDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSS 256
             I+K H       S  R  V KA+ +   G+ K+    K  +  + +  +  D P  S+
Sbjct: 398 ELIEKGHWDDVFLDSTQRHHVVKAVDNPPRGSPKA--LKKVFIEETGNLIETVDAPDSSA 457

Query: 257 NTPRTGLSTSQERFDENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHIDPSSHLG 316
             P +  +T+       G +K+      L    DR     L+ +  +       P + +G
Sbjct: 458 TVPESDRATAAV---GTGTKKNPSEGVSLP-AGDRPRAKVLKIEAVSDTS---APQAQVG 517

Query: 317 AIERNHVPRKQELKPSVQELASRAASRSMVEAAKNIIAPATAYQFEVSWRGFSGDHALQA 376
             +    P  ++     +++  + A+  +         PA ++Q E  +R       +  
Sbjct: 518 VKQDARQPGSEKASVRAEQMPGQLAAAGLPP------VPANSFQLESDFRQLRSSPEMLY 577

Query: 377 CLLKAISPANLPQIFKNALTAPILIDIVKCVATFFTEEMTLAISF--LENLAKVPRFSIL 424
             +K I P+  P++F+  L   +   I+K +  F+ E    A+ F  LE L+++ RF + 
Sbjct: 578 QYVKNIEPSLYPKLFQKNLDPDVFNQIIKILHDFYIEREKPALIFEVLERLSQLRRFDMA 631

[Close]

BLAST of Sed0025878 vs. ExPASy Swiss-Prot
Match: Q6NU95 (RNA polymerase II-associated protein 3 OS=Xenopus laevis OX=8355 GN=rpap3 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-24
Identity = 104/377 (27.59%), Postives = 183/377 (48.54%), Query Frame = 0


Query: 72  RNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPT-AVAFANRAMAYLKIR 131
           +  + +Q    A  +K+ GN YFK+ K++ A++CYS+ +    T A+  ANRAMAYLKI+
Sbjct: 273 KQIEIQQRKQQAIMQKDLGNAYFKEGKYEIAIECYSQGMEADNTNALLPANRAMAYLKIQ 332

Query: 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQH 191
           +++EAE DCT A++LD  Y KA++RR TA   LGK KEA ED E   +L+P N++     
Sbjct: 333 KYKEAEADCTLAISLDASYCKAFARRGTASIMLGKQKEAKEDFEMVLKLDPGNKQ----- 392

Query: 192 SDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAK-----IQDIPTVSSNTPRTGLST 251
                    A+L+ A  + +  + +K+  GN +S  +     ++ +P + S  P   +  
Sbjct: 393 ---------AVLELAKISQELRSIEKDRNGNKDSNQRKLINTVEKLPHLRSTKPLRRMVI 452

Query: 252 SQ-----ERFDENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHIDPSSHLGAIER 311
            +     E F+ + +E + + +  +++T + +T  +L  ++   N   + PS  +  IE 
Sbjct: 453 EEVGGPAEIFNTSLKETNHRKADSVDLTAETNT-QDLNQEQNICNSPDV-PSPKIPKIEE 512

Query: 312 -NHVPRKQELKPSVQELASRAASRSMVEAAKNI---------IAPATAYQFEVSWRGFSG 371
            +  P   E       L SR +   + +                P  ++Q E  +R   G
Sbjct: 513 ISDTPGSCEPTTGEDYLTSRPSPPKIEKVVSTFSESLNIGIPAVPTNSFQLESDFRRLKG 572

Query: 372 DHALQACLLKAISPANLPQIFKNALTAPILIDIVKCVATFF--TEEMTLAISFLENLAKV 426
           +  L    LK I P    ++FK AL   +  DI+  +   F   +   L    L+ L+++
Sbjct: 573 NPDLLYVYLKQIEPTLYGKLFKKALDPDLFSDILTILREQFINKDSPDLIFEILQRLSEL 632

[Close]

BLAST of Sed0025878 vs. ExPASy Swiss-Prot
Match: Q68FQ7 (RNA polymerase II-associated protein 3 OS=Rattus norvegicus OX=10116 GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-24
Identity = 107/374 (28.61%), Postives = 182/374 (48.66%), Query Frame = 0


Query: 83  AASEKEQGNEYFKKKKFKEAVDCYSRSIALSPT-AVAFANRAMAYLKIRRFQEAEDDCTE 142
           A +EK+ GN +FK+ K+++A++CY+R IA   T A+  ANRAMAYLK+++++EAE DCT+
Sbjct: 282 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQ 341

Query: 143 ALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHSDL-RALVGK- 202
           A+ LD  Y KA++RR TAR  LGK  EA +D E    LEP N++   + S + + L+ K 
Sbjct: 342 AILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKKELIEKG 401

Query: 203 ----AILDRASGASKSSTKDKETVGNSNSEAKI-----------QDIPTVSSNTPRT--- 262
                 LD     +     D    G+  +  K+            D P  S+  P +   
Sbjct: 402 RWDDVFLDSTQRHNVVKPVDSPHRGSPKALKKVFIEETGNLIESVDAPESSATVPESDRA 461

Query: 263 --GLSTSQERFDENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHIDPSSHLGAIE 322
              + T +++    G+  S   + R +V +  + G               D S+      
Sbjct: 462 AVAVDTGRKKDFSQGDSVSSGETPRAKVLKIEAVG---------------DSSA-----P 521

Query: 323 RNHVPRKQELKPSVQELASRAASRSMVEAAKNII--APATAYQFEVSWRGFSGDHALQAC 382
           +  V  KQ ++ SV E  S   +++  + A  ++   PA ++Q E  +R       +   
Sbjct: 522 QAQVDVKQGVRQSVSEKTSVRVAQTPGQLAAVVLPPVPANSFQLESDFRQLRSSPEMLYQ 581

Query: 383 LLKAISPANLPQIFKNALTAPILIDIVKCVATFFTEEMTLAISF--LENLAKVPRFSILM 430
            +K I P+  P++F+  L   +   I+K +  F+ E    A+ F  LE L+++ RF + +
Sbjct: 582 YVKKIEPSLYPKLFQKNLDPDVFNQIIKILHDFYVEREKPALIFEVLERLSQLRRFDMAV 634

[Close]

BLAST of Sed0025878 vs. ExPASy Swiss-Prot
Match: Q9H6T3 (RNA polymerase II-associated protein 3 OS=Homo sapiens OX=9606 GN=RPAP3 PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 2.4e-22
Identity = 115/420 (27.38%), Postives = 190/420 (45.24%), Query Frame = 0


Query: 36  KLKPQAIGEEKEGRR--QVEKASPADYMKQYDAVNRLS----RNFQTEQSFVDAASEKEQ 95
           +L+P       E R+  Q   +    Y K+ D V + +    +  + +Q+   A SEK++
Sbjct: 229 ELEPNNFEATNELRKISQALASKENSYPKEADIVIKSTEGERKQIEAQQNKQQAISEKDR 288

Query: 96  GNEYFKKKKFKEAVDCYSRSIAL-SPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDR 155
           GN +FK+ K++ A++CY+R IA     A+  ANRAMAYLKI++++EAE DCT+A+ LD  
Sbjct: 289 GNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGS 348

Query: 156 YIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQE------------IKKQH------ 215
           Y KA++RR TAR  LGK  EA +D E    LEP N++            I+K H      
Sbjct: 349 YSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKELIEKGHWDDVFL 408

Query: 216 -SDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIP--TVSSNTPRTGLSTSQ 275
            S  R  V K I D       +    K  +  + +  +  D+P  T ++      ++ + 
Sbjct: 409 DSTQRQNVVKPI-DNPPHPGSTKPLKKVIIEETGNLIQTIDVPDSTTAAAPENNPINLAN 468

Query: 276 ERFDENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHIDPSSHLGAIERNHVPRKQ 335
                    K   +   L  T D      L+ + E  +   + P + L          KQ
Sbjct: 469 VIAATGTTSKKNSSQDDLFPTSDTPRAKVLKIE-EVSDTSSLQPQASL----------KQ 528

Query: 336 ELKPSVQELASRAASRSMVEAAKNII--APATAYQFEVSWRGFSGDHALQACLLKAISPA 395
           ++  S  E       +   + A  ++   PA ++Q E  +R       +    LK I P+
Sbjct: 529 DVCQSYSEKMPIEIEQKPAQFATTVLPPIPANSFQLESDFRQLKSSPDMLYQYLKQIEPS 588

Query: 396 NLPQIFKNALTAPILIDIVKCVATFF--TEEMTLAISFLENLAKVPRFSILMMCLPSDEK 424
             P++F+  L   +   IVK +  F+   E+  L    L+ L+++ RF + +M +   EK
Sbjct: 589 LYPKLFQKNLDPDVFNQIVKILHDFYIEKEKPLLIFEILQRLSELKRFDMAVMFMSETEK 636

[Close]

BLAST of Sed0025878 vs. ExPASy TrEMBL
Match: A0A6J1FCA0 (RNA polymerase II-associated protein 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444090 PE=4 SV=1)

HSP 1 Score: 730.3 bits (1884), Expect = 4.8e-207
Identity = 387/453 (85.43%), Postives = 412/453 (90.95%), Query Frame = 0


Query: 1   MADSSGKHRRDQPLDFQGFLNDLQDWEFSLKGKDKKLKPQAIGEEKEGRRQVEKASPADY 60
           MADSSGKH RDQPLDFQGFLNDLQDWE SL G+DKKLKP AI +EKEG RQ  KA+ ADY
Sbjct: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAADY 60

Query: 61  MKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPTAVAFA 120
           MK YDAVN LS    TEQSFVDAASEKEQGNEYFK+KKFKEA+ CYSRSIALSPTAVAFA
Sbjct: 61  MKHYDAVNSLSTKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPTAVAFA 120

Query: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
           NRAMAYLKIRRFQEAEDDCTEALN DDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 121 NRAMAYLKIRRFQEAEDDCTEALNFDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180

Query: 181 PNNQEIKKQHSDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSSNTPR 240
           PNNQEIKKQH++LRA VGKAIL++ASGAS+SSTK+K+ VG S+SEAKIQDIP VSS+T R
Sbjct: 181 PNNQEIKKQHAELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAKIQDIPPVSSSTLR 240

Query: 241 TGLSTSQERFDENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHIDPSSHLGAIER 300
           +GLS +QE  +ENG EK+VK SARLE TE RSTGAE+RYKREA NG H DP+S+LGA+ER
Sbjct: 241 SGLSAAQEHVEENGGEKAVKESARLEGTEGRSTGAEIRYKREATNGVHKDPNSNLGALER 300

Query: 301 NHVPRKQELKPSVQELASRAASRSMVEAAKNIIAPATAYQFEVSWRGFSGDHALQACLLK 360
           NHV RKQELKPSVQELASRAASRSMVEAAKNI+AP TAYQFEVSWRGFSGD ALQA LLK
Sbjct: 301 NHVSRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQARLLK 360

Query: 361 AISPANLPQIFKNALTAPILIDIVKCVATFFTEEMTLAISFLENLAKVPRFSILMMCLPS 420
           AISPA LPQIFKNAL+APILID VKCVATFFTEEM LAISFLENLAKVPRFSILMMCLPS
Sbjct: 361 AISPAKLPQIFKNALSAPILIDTVKCVATFFTEEMALAISFLENLAKVPRFSILMMCLPS 420

Query: 421 DEKSDLLKIWDEVFCDEAVPIECAETLDSLRSK 454
           +EKSDLLKIWDEVFCDEAVPIE AE LDSLRSK
Sbjct: 421 NEKSDLLKIWDEVFCDEAVPIEYAEMLDSLRSK 453

[Close]

BLAST of Sed0025878 vs. ExPASy TrEMBL
Match: A0A6J1HPT1 (RNA polymerase II-associated protein 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465531 PE=4 SV=1)

HSP 1 Score: 727.6 bits (1877), Expect = 3.1e-206
Identity = 385/453 (84.99%), Postives = 412/453 (90.95%), Query Frame = 0


Query: 1   MADSSGKHRRDQPLDFQGFLNDLQDWEFSLKGKDKKLKPQAIGEEKEGRRQVEKASPADY 60
           MADSSGKH RDQPLDFQGFLNDLQDWE SL G+DKKLKP AI +EKEG RQ  KA+ ADY
Sbjct: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAADY 60

Query: 61  MKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPTAVAFA 120
           +K YDA+N LS     EQSFVDAASEKEQGNEYFK+KKFKEA+ CYSRSIALSPTAVAFA
Sbjct: 61  VKHYDAINSLSTKSHNEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPTAVAFA 120

Query: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
           NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180

Query: 181 PNNQEIKKQHSDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSSNTPR 240
           PNNQEIKKQH++LRA VGKAIL++ASGAS+SSTKDK+ VG S+SEAKIQDIP VSS+T R
Sbjct: 181 PNNQEIKKQHAELRAFVGKAILEKASGASRSSTKDKKMVGKSDSEAKIQDIPPVSSSTLR 240

Query: 241 TGLSTSQERFDENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHIDPSSHLGAIER 300
           +GLS +QE  +ENG EK+VK SARLE TE RSTGAE+RYKREA NG H DP+S+LGA+ER
Sbjct: 241 SGLSAAQEHVEENGGEKAVKESARLEGTEGRSTGAEIRYKREATNGVHKDPNSNLGALER 300

Query: 301 NHVPRKQELKPSVQELASRAASRSMVEAAKNIIAPATAYQFEVSWRGFSGDHALQACLLK 360
           NHV RKQELKPSVQELASRAASRSMVEAAKNI+AP TAYQFEVSWRGFSGD ALQA LLK
Sbjct: 301 NHVSRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQARLLK 360

Query: 361 AISPANLPQIFKNALTAPILIDIVKCVATFFTEEMTLAISFLENLAKVPRFSILMMCLPS 420
           AISPA LPQIFKNAL+APILIDIVKCVATFFTEEM LAISFLENLAKVPRFSILMMCLPS
Sbjct: 361 AISPAKLPQIFKNALSAPILIDIVKCVATFFTEEMALAISFLENLAKVPRFSILMMCLPS 420

Query: 421 DEKSDLLKIWDEVFCDEAVPIECAETLDSLRSK 454
           +EK DLLKIWDEVFCDEAVPIE AE LDSLRS+
Sbjct: 421 NEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSE 453

[Close]

BLAST of Sed0025878 vs. ExPASy TrEMBL
Match: A0A1S3BWU0 (RNA polymerase II-associated protein 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494093 PE=4 SV=1)

HSP 1 Score: 719.2 bits (1855), Expect = 1.1e-203
Identity = 382/453 (84.33%), Postives = 407/453 (89.85%), Query Frame = 0


Query: 1   MADSSGKHRRDQPLDFQGFLNDLQDWEFSLKGKDKKLKPQAIGEEKEGRRQVEKASPADY 60
           MADSSGKH RD PLDFQGFLNDLQDWE S KGKDKKLKPQAIG+EKE RRQ EKAS ADY
Sbjct: 61  MADSSGKHGRDHPLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADY 120

Query: 61  MKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPTAVAFA 120
           +KQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFK+KKFKEA+DCYSRSIALSPTAVAFA
Sbjct: 121 LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 180

Query: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
           NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 181 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 240

Query: 181 PNNQEIKKQHSDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSSNTPR 240
           PNNQEIKKQH+DLRA VGKAIL++ASGAS+SS KDK+ +  S+S+AKIQDIP VSS+T R
Sbjct: 241 PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR 300

Query: 241 TGLSTSQERFDENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHIDPSSHLGAIER 300
           TGL  ++ER +ENG E +VK SAR+E  ED ST AE+  K+ A NGFH D SS+L A+ER
Sbjct: 301 TGLLAARERVEENGGENAVKTSARVEENEDISTRAEIACKKVATNGFHKDSSSYLWALER 360

Query: 301 NHVPRKQELKPSVQELASRAASRSMVEAAKNIIAPATAYQFEVSWRGFSGDHALQACLLK 360
           +H+PRK ELK SVQELAS+AASRSMVEAAKNIIAP TAYQFEVSWRGFS D ALQACLLK
Sbjct: 361 DHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLK 420

Query: 361 AISPANLPQIFKNALTAPILIDIVKCVATFFTEEMTLAISFLENLAKVPRFSILMMCLPS 420
            ISPA LPQIFKNALTAPILIDIVKCVATFFTEE  LAISFLENL KVPRFSILMMCL S
Sbjct: 421 TISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSS 480

Query: 421 DEKSDLLKIWDEVFCDEAVPIECAETLDSLRSK 454
            EK DLLKIWDEVFCDEAVPIE AE LDSLRSK
Sbjct: 481 SEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSK 513

[Close]

BLAST of Sed0025878 vs. ExPASy TrEMBL
Match: A0A6J1DUX9 (RNA polymerase II-associated protein 3 OS=Momordica charantia OX=3673 GN=LOC111023318 PE=4 SV=1)

HSP 1 Score: 717.2 bits (1850), Expect = 4.2e-203
Identity = 379/455 (83.30%), Postives = 411/455 (90.33%), Query Frame = 0


Query: 1   MADSSGKHRRDQPLDFQGFLNDLQDWEFSLKGKDKKLKPQAIGEEKEGRRQVEKASPADY 60
           MADSSGKH RD  LDFQGFLND+QDWE SLKGKDKKLKPQA G+EKEGRR+ EKAS ADY
Sbjct: 1   MADSSGKHGRDSSLDFQGFLNDMQDWELSLKGKDKKLKPQAFGKEKEGRRRAEKASAADY 60

Query: 61  MKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPTAVAFA 120
           +K YDAVN LSRNFQTEQSFVDAASEKE+GNEYFK+KKFKEA+DCYSRSIALSPTAVAFA
Sbjct: 61  LKHYDAVNHLSRNFQTEQSFVDAASEKERGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 120

Query: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
           NRAMAYLKI+RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 121 NRAMAYLKIKRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180

Query: 181 PNNQEIKKQHSDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSSNTPR 240
           P+NQEIKKQH++LRA VGK+IL++ASGAS+SS++DKE VG S+SEAKIQD+  VSS+T R
Sbjct: 181 PHNQEIKKQHAELRAFVGKSILEKASGASRSSSQDKEKVGKSDSEAKIQDVHPVSSSTLR 240

Query: 241 TGLSTSQERFDENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHID--PSSHLGAI 300
           TGL  +QE  +EN  +K+VKAS RL+ TEDRS  AE+RYKREA NGFH D  PS +LG +
Sbjct: 241 TGLQAAQEHIEENVRQKAVKASTRLQDTEDRSMEAEIRYKREATNGFHKDASPSLNLGGL 300

Query: 301 ERNHVPRKQELKPSVQELASRAASRSMVEAAKNIIAPATAYQFEVSWRGFSGDHALQACL 360
           ERNHV RKQELKPSVQELASRAASRSMVEAAKNI AP TAYQFEVSWRGFSGD ALQA L
Sbjct: 301 ERNHVTRKQELKPSVQELASRAASRSMVEAAKNITAPTTAYQFEVSWRGFSGDCALQARL 360

Query: 361 LKAISPANLPQIFKNALTAPILIDIVKCVATFFTEEMTLAISFLENLAKVPRFSILMMCL 420
           LKAISPA LPQIFKNALTAP+LIDIVKCVA+FFTEEM LAI+FLENL +VPRF ILMMCL
Sbjct: 361 LKAISPAKLPQIFKNALTAPMLIDIVKCVASFFTEEMALAINFLENLTQVPRFGILMMCL 420

Query: 421 PSDEKSDLLKIWDEVFCDEAVPIECAETLDSLRSK 454
           PS EK DLLKIWDEVFCDEAVPIE AE LDSLRSK
Sbjct: 421 PSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSK 455

[Close]

BLAST of Sed0025878 vs. ExPASy TrEMBL
Match: A0A0A0LGI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034580 PE=4 SV=1)

HSP 1 Score: 709.9 bits (1831), Expect = 6.8e-201
Identity = 379/453 (83.66%), Postives = 406/453 (89.62%), Query Frame = 0


Query: 1   MADSSGKHRRDQPLDFQGFLNDLQDWEFSLKGKDKKLKPQAIGEEKEGRRQVEKASPADY 60
           MADSS KH RDQ LDFQGFLNDLQDWE S KGKDKKLKPQAIG+EKE RRQ EKAS ADY
Sbjct: 1   MADSSAKHGRDQLLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADY 60

Query: 61  MKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPTAVAFA 120
           MKQYDAVNRLSRNFQTE SFVDAASEKEQGNEYFK+KKFKEA+DCYSRSIALSPTAVAFA
Sbjct: 61  MKQYDAVNRLSRNFQTEGSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 120

Query: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
           NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180

Query: 181 PNNQEIKKQHSDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSSNTPR 240
           PNNQEIKKQH+DLRA VGKAIL++ASGAS+SSTK+K+T+  S+S+AKIQDIP VSS+T R
Sbjct: 181 PNNQEIKKQHADLRAFVGKAILEKASGASRSSTKNKKTLKKSDSDAKIQDIPPVSSSTSR 240

Query: 241 TGLSTSQERFDENGEEKSVKASARLEVTEDRSTGAELRYKREAKNGFHIDPSSHLGAIER 300
           TGL  ++ER +ENG   +VK SARLE +ED S+GAE+  K+ A NGFH D SS+L A+ER
Sbjct: 241 TGLLAARERVEENGGGNAVKTSARLEESEDTSSGAEITSKKVATNGFHKDSSSYLSALER 300

Query: 301 NHVPRKQELKPSVQELASRAASRSMVEAAKNIIAPATAYQFEVSWRGFSGDHALQACLLK 360
           +H+PRKQELK SV ELAS+AASRSMVEAAKNIIAP TAYQFEVSWRGFSGD ALQA LLK
Sbjct: 301 DHLPRKQELKASVYELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSGDQALQARLLK 360

Query: 361 AISPANLPQIFKNALTAPILIDIVKCVATFFTEEMTLAISFLENLAKVPRFSILMMCLPS 420
            ISPA LPQIFK+ALTAPILIDIVKCVATFF EE  LAISFLENL  VPRFSILMMCL S
Sbjct: 361 TISPAKLPQIFKDALTAPILIDIVKCVATFFIEEPALAISFLENLVNVPRFSILMMCLSS 420

Query: 421 DEKSDLLKIWDEVFCDEAVPIECAETLDSLRSK 454
            EK DLLKIWDEVFCDEAVPIE AE LDSLRSK
Sbjct: 421 SEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSK 453

[Close]

BLAST of Sed0025878 vs. TAIR 10
Match: AT1G56440.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 441.0 bits (1133), Expect = 1.1e-123
Identity = 250/479 (52.19%), Postives = 331/479 (69.10%), Query Frame = 0


Query: 1   MADSSGKHRRDQPLDFQGFLNDLQDWEFSLKGKDKKLKPQAIGEEKEGRRQVEKASPA-- 60
           MA S  KH RDQ  DFQGF NDLQDWE SLK KDKK+K Q              +     
Sbjct: 1   MARSPSKHGRDQTQDFQGFFNDLQDWELSLKDKDKKIKQQPANSSNPSSETFRPSGSGKY 60

Query: 61  DYMKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPTAVA 120
           D+ K+Y ++  LS +   E S +D++SEKEQGNE+FK+KKF EA+DCYSRSIALSP AV 
Sbjct: 61  DFAKKYRSIRDLSSSLIGE-SLLDSSSEKEQGNEFFKQKKFNEAIDCYSRSIALSPNAVT 120

Query: 121 FANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQR 180
           +ANRAMAYLKI+R++EAE DCTEALNLDDRYIKAYSRRATARKELG  KEA EDAEFA R
Sbjct: 121 YANRAMAYLKIKRYREAEVDCTEALNLDDRYIKAYSRRATARKELGMIKEAKEDAEFALR 180

Query: 181 LEPNNQEIKKQHSDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSSNT 240
           LEP +QE+KKQ++D+++L+ K I+++A+GA +S+   +E +  S  + KIQ   T  ++ 
Sbjct: 181 LEPESQELKKQYADIKSLLEKEIIEKATGAMQSTA--QELLKTSGLDKKIQKPKTEMTSK 240

Query: 241 PRTGLSTSQERF---------------------DENGEEKSVKASARLEVTEDRS-TGAE 300
           P T ++ +                         +E  +E S+K  A  E+ + +  T   
Sbjct: 241 PVTLVAKTNRDIVQPVLGSNESSGKKLIENIQPEEKSKEGSMKIPAITEILDSKKVTPGS 300

Query: 301 LRYKREAKNGFHIDPSSHLGAIERNHVPRKQELKPSVQELASRAASRSMVEAAKNIIAPA 360
             Y++EAK     D +    +   N V ++ ELKPSVQELA+ AAS +M EA+KNI  P 
Sbjct: 301 QSYEKEAKPS---DRNGTQPSGPENQVSKQLELKPSVQELAAHAASLAMTEASKNIKTPK 360

Query: 361 TAYQFEVSWRGFSGDHALQACLLKAISPANLPQIFKNALTAPILIDIVKCVATFFTEEMT 420
           +AY+FE SWR FSGD AL++ LLK  +P++LPQIFKNALT+P+L+DI+KCVA+FFTE+M 
Sbjct: 361 SAYEFENSWRSFSGDSALRSQLLKVTTPSSLPQIFKNALTSPVLVDIIKCVASFFTEDMD 420

Query: 421 LAISFLENLAKVPRFSILMMCLPSDEKSDLLKIWDEVFCDEAVPIECAETLDSLRSKIC 456
           LA+ ++ENL KVPRF++L+MCL S EK++LLKIW++VFC++A P+E AE LD LRS+ C
Sbjct: 421 LAVKYIENLTKVPRFNMLVMCLTSTEKNELLKIWEDVFCNKATPMEYAEVLDKLRSRYC 473

[Close]

BLAST of Sed0025878 vs. TAIR 10
Match: AT1G56440.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 433.7 bits (1114), Expect = 1.8e-121
Identity = 252/497 (50.70%), Postives = 331/497 (66.60%), Query Frame = 0


Query: 1   MADSSGKHRRDQPLDFQGFLNDLQDWEFSLKGKDKKLKPQAIGEEKEGRRQVEKASPA-- 60
           MA S  KH RDQ  DFQGF NDLQDWE SLK KDKK+K Q              +     
Sbjct: 1   MARSPSKHGRDQTQDFQGFFNDLQDWELSLKDKDKKIKQQPANSSNPSSETFRPSGSGKY 60

Query: 61  DYMKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKKKKFKEAVDCYSRSIALSPTAVA 120
           D+ K+Y ++  LS +   E S +D++SEKEQGNE+FK+KKF EA+DCYSRSIALSP AV 
Sbjct: 61  DFAKKYRSIRDLSSSLIGE-SLLDSSSEKEQGNEFFKQKKFNEAIDCYSRSIALSPNAVT 120

Query: 121 FANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQR 180
           +ANRAMAYLKI+R++EAE DCTEALNLDDRYIKAYSRRATARKELG  KEA EDAEFA R
Sbjct: 121 YANRAMAYLKIKRYREAEVDCTEALNLDDRYIKAYSRRATARKELGMIKEAKEDAEFALR 180

Query: 181 LEPNNQEIKKQHSDLRALVGKAILDRASGASKSSTKDKETVGNSNSEAKIQDIPTVSSNT 240
           LEP +QE+KKQ++D+++L+ K I+++A+GA +S+   +E +  S  + KIQ   T  ++ 
Sbjct: 181 LEPESQELKKQYADIKSLLEKEIIEKATGAMQSTA--QELLKTSGLDKKIQKPKTEMTSK 240

Query: 241 PRT--------------GLSTSQER-------------------------FDENGEEKSV 300
           P T              G + S  +                           E  +E S+
Sbjct: 241 PVTLVAKTNRDIVQPVLGSNESSGKKLIENIQPEHRWNFRELISLYLSCYLQEKSKEGSM 300

Query: 301 KASARLEVTEDRS-TGAELRYKREAKNGFHIDPSSHLGAIERNHVPRKQELKPSVQELAS 360
           K  A  E+ + +  T     Y++EAK     D +    +   N V ++ ELKPSVQELA+
Sbjct: 301 KIPAITEILDSKKVTPGSQSYEKEAKPS---DRNGTQPSGPENQVSKQLELKPSVQELAA 360

Query: 361 RAASRSMVEAAKNIIAPATAYQFEVSWRGFSGDHALQACLLKAISPANLPQIFKNALTAP 420
            AAS +M EA+KNI  P +AY+FE SWR FSGD AL++ LLK  +P++LPQIFKNALT+P
Sbjct: 361 HAASLAMTEASKNIKTPKSAYEFENSWRSFSGDSALRSQLLKVTTPSSLPQIFKNALTSP 420

Query: 421 ILIDIVKCVATFFTEEMTLAISFLENLAKVPRFSILMMCLPSDEKSDLLKIWDEVFCDEA 456
           +L+DI+KCVA+FFTE+M LA+ ++ENL KVPRF++L+MCL S EK++LLKIW++VFC++A
Sbjct: 421 VLVDIIKCVASFFTEDMDLAVKYIENLTKVPRFNMLVMCLTSTEKNELLKIWEDVFCNKA 480

[Close]

BLAST of Sed0025878 vs. TAIR 10
Match: AT3G17970.1 (translocon at the outer membrane of chloroplasts 64-III )

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-18
Identity = 51/109 (46.79%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 87  KEQGNEYFKKKKFKEAVDCYSRSIALSP-TAVAFANRAMAYLKIRRFQEAEDDCTEALNL 146
           KE+GN+ FK+K +++A+  YS +I LS   A  ++NRA AYL++  F +AE+DCT+A+ L
Sbjct: 478 KEKGNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITL 537

Query: 147 DDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHSDLR 195
           D + +KAY RR TAR+ LG  K A+ED  +A  LEPNN+        LR
Sbjct: 538 DKKNVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNNKRASLSAERLR 586

[Close]

BLAST of Sed0025878 vs. TAIR 10
Match: AT5G09420.1 (translocon at the outer membrane of chloroplasts 64-V )

HSP 1 Score: 79.7 bits (195), Expect = 6.6e-15
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 87  KEQGNEYFKKKKFKEAVDCYSRSIALS-PTAVAFANRAMAYLKIRRFQEAEDDCTEALNL 146
           KE+GN  +K K++ +AV+ Y+ +I L+   A  + NRA A+L++  FQ+AE DCT+A+ +
Sbjct: 492 KEKGNAAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCFQQAEQDCTKAMLI 551

Query: 147 DDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHSDLR 195
           D + +KAY RR TAR+ L + KEA  D   A  LEP N+  K     LR
Sbjct: 552 DKKNVKAYLRRGTARESLVRYKEAAADFRHALVLEPQNKTAKVAEKRLR 600

[Close]

BLAST of Sed0025878 vs. TAIR 10
Match: AT2G42810.1 (protein phosphatase 5.2 )

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-14
Identity = 50/133 (37.59%), Postives = 75/133 (56.39%), Query Frame = 0


Query: 75  QTEQSFVDAASE-KEQGNEYFKKKKFKEAVDCYSRSIAL-SPTAVAFANRAMAYLKIRRF 134
           + E S V  A E K Q NE FK  K+  A+D Y+++I L S  AV +ANRA A+ K+  +
Sbjct: 4   KNENSDVSRAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEY 63

Query: 135 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHSD 194
             A  D ++A+ +D RY K Y RR  A   +GK K+AL+D +  +RL PN+ +  ++  +
Sbjct: 64  GSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSPNDPDATRKLKE 123

Query: 195 LRALVGKAILDRA 206
               V K   + A
Sbjct: 124 CEKAVMKLKFEEA 136

The following BLAST results are available for this feature:

BLAST of Sed0025878 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021040.1	4.5e-207	85.84	RNA polymerase II-associated protein 3, partial [Cucurbita argyrosperma subsp. a...	[more]
XP_022937809.1	1.0e-206	85.43	RNA polymerase II-associated protein 3 isoform X1 [Cucurbita moschata]	[more]
XP_038890655.1	1.0e-206	84.77	RNA polymerase II-associated protein 3 isoform X3 [Benincasa hispida]	[more]
XP_022965718.1	6.5e-206	84.99	RNA polymerase II-associated protein 3 isoform X1 [Cucurbita maxima]	[more]
XP_038890654.1	3.2e-205	84.40	RNA polymerase II-associated protein 3 isoform X2 [Benincasa hispida]	[more]

BLAST of Sed0025878 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZKQ3	5.6e-27	29.38	RNA polymerase II-associated protein 3 OS=Gallus gallus OX=9031 GN=RPAP3 PE=2 SV...	[more]
Q9D706	1.5e-24	28.73	RNA polymerase II-associated protein 3 OS=Mus musculus OX=10090 GN=Rpap3 PE=1 SV...	[more]
Q6NU95	1.5e-24	27.59	RNA polymerase II-associated protein 3 OS=Xenopus laevis OX=8355 GN=rpap3 PE=2 S...	[more]
Q68FQ7	2.6e-24	28.61	RNA polymerase II-associated protein 3 OS=Rattus norvegicus OX=10116 GN=Rpap3 PE...	[more]
Q9H6T3	2.4e-22	27.38	RNA polymerase II-associated protein 3 OS=Homo sapiens OX=9606 GN=RPAP3 PE=1 SV=...	[more]

BLAST of Sed0025878 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCA0	4.8e-207	85.43	RNA polymerase II-associated protein 3 isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1HPT1	3.1e-206	84.99	RNA polymerase II-associated protein 3 isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A1S3BWU0	1.1e-203	84.33	RNA polymerase II-associated protein 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1DUX9	4.2e-203	83.30	RNA polymerase II-associated protein 3 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A0A0LGI8	6.8e-201	83.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034580 PE=4 SV=1	[more]

BLAST of Sed0025878 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56440.1	1.1e-123	52.19	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G56440.2	1.8e-121	50.70	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G17970.1	1.7e-18	46.79	translocon at the outer membrane of chloroplasts 64-III	[more]
AT5G09420.1	6.6e-15	43.12	translocon at the outer membrane of chloroplasts 64-V	[more]
AT2G42810.1	1.1e-14	37.59	protein phosphatase 5.2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 146..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	PANTHER	PTHR47329	OS05G0129900 PROTEIN	coord: 8..445
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 73..106 e-value: 5.8E-4 score: 29.2 coord: 107..139 e-value: 0.082 score: 22.0 coord: 140..173 e-value: 0.064 score: 22.4
IPR019734	Tetratricopeptide repeat	PFAM	PF13181	TPR_8	coord: 80..104 e-value: 0.09 score: 13.0 coord: 108..136 e-value: 0.22 score: 11.8
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 140..173 score: 8.0539
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 73..106 score: 10.0009
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 57..171 e-value: 1.4E-34 score: 120.5
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 74..189
IPR025986	RNA-polymerase II-associated protein 3-like, C-terminal domain	PFAM	PF13877	RPAP3_C	coord: 324..413 e-value: 2.5E-25 score: 88.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025878.1	Sed0025878.1	mRNA
Sed0025878.2	Sed0025878.2	mRNA
Sed0025878.3	Sed0025878.3	mRNA
Sed0025878.4	Sed0025878.4	mRNA
Sed0025878.5	Sed0025878.5	mRNA
Sed0025878.6	Sed0025878.6	mRNA
Sed0025878.7	Sed0025878.7	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding