Sed0025863 (gene) Chayote v1

Overview


Name	Sed0025863
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA polymerase II transcription factor B subunit 4
Location	LG05: 11690677 .. 11696408 (+)
RNA-Seq Expression	Sed0025863
Synteny	Sed0025863

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAACCCATTTCTAATCAACCATCCAGTGGAAAAGAAGGGTCACCCGGTTCGATTGGGTTTCTTCTCCGTAAACTGATCCGACACGTTTTTGCCTCTATTACACTTGGCGTCTTCTCTCCGTTGCCTTTTTCTGAAACAACCATGGCTTCTGCACCTTTGAAACTCTATGCAGGTTCCTTCTCCAATCCCTCTCTCTGTCTCTATAGGCACTCGGGTACTATTTTGAAGTTGCAGAAACTTACCTTATTTTGTGATCTTTTGATTGTTTTGTTGCAGATGATGTGAGCCTTTTGGTGGTTTTGCTGGATACGAATCCATTTTTCTGGAGCACATCTTCTCTCCCATTCTCCAAGTTTCTCTCTCATGTAATTGAGAAATGATTTCTCCACCTGTGAATTCATTGTTCTATCAAGTAGGTATTTCAAATAGAATTGTGATGCATTTTGGTACTTTTTCTGTTTTGGGCGTGTAGGTACTTGCTTTTCTGAACTCCATTTTAGTTATGAATCAACTTAATGAGGTTGTGGTTATTGGTACTGGATATGCCTCGTGTAAGTATCTATATAACTCGTCTTCGCATTCAAATCGTGGTCTTGAAGATGGTAGAATGCCTGCACTTTGTATTCGTTTATTGAAGAATTTGGAGGAGTTCATGATTGGGGATGAGAAGTCCATCAAGGAAGATCCCAGAGGAGGGACTATGTCTTCACTTCTATCTGGATCACTCTCCATGGCCTTGTGTTGTATCCTTGTTCATGATTTTTGGTACTGATTGTTTGCTTATTGATAGAGTTTTAGAGAGAGAAAGAGAGAATTGTATCGAGGAAAAGATGGAGGCTACATTGTGCCACCTACATTTACAATTGAAACCTTGAACATTAAATAGTAAACCATAAAACCTAAAGGAGCTAATGGGCTAATACTCTAACAATTGTTTATGCTAATAGCTTCTTGTCATCTTTGCAATAGTAAAACTTCATTAGGTTCTAGAATTAGAATGTTTCAGGATCATCTAGGTTGAGTAACAGCACATAGAAATTGGCATTAAGCAATATCTATGGAGATGACTGATGAGAGTTGCATTTGGAAGTTATCTTTCATTTGTATATTTAATTGATATCCGTGGCACTGAGTAATGGTTGGCAGCAAACGGCTGTGAAAGATATGGTTGCCACTCTTTAAATTCAGCTTGAGTAATCTTGCTAATGTTCACCAAGATATTATTTTTCTTCAAATTCCTGACCTTGTATGTAGATATACAGAAAGTTTTCCGCTCGGGGTCACTCCATCCCCATCCTCGAGTAAGCACTTGTTTTTTTGTTCTGCACTGCACCATTTACTGCAAAATTTCATTTTCTATTTCAGCATTGTATTCTTCATTTCTTTTGTTTGTTGCGTGCATGTACTATTTGTTCCAAAGTTAGCTTTGTTTTTTTTAAACGTGACTAATCTATGTGAATGTATTTACTTTGGAGTGTAGATCCTTTGCTTGCAGGGATCCCCAGATGGACCTGAACAGTAAGCCTTTTCTGATCTTGTATATTGAATTTGCTTTTATTTTTTTTTATTCATTGATTTTTAATGTAATTTTCTTTAACAAATTGTAAAATCTTTTTCCAGTAATTGTTTTTTCTTTCCAGATATGTCGCAATCATGAATGCCATCTTTTCTGCTCAACGTTCAATGGTTGGTATTTCTAGTTCACTTCTAAGTTCGCTGTGTTGTTATATTATATGGTTTTATTATCTTCTATTAATCACCAACTCTTTAAATTGAACCGGTTAAGCATCAGTAAGTAGTGGTAATGTAGTCTCCAGATATTTTTCTGGAAATGCTTGATATAAATTTCATCTCTATTTAACTTGTTCTTTGTCTGGTCTTGATACTAGAACGTTGTGGACTAAACTTGTTTGTAGGTTTCTTCCCCTATAATTTTTGGAATCAAATTCAAGAGATTCATTAACAAATTTGAATTTAAATGCATCCACGAGACTACAATAATGTTTATCATCATACTTGCTTGCTGCAGTGAATAACTGAAAGACTGAATATCTGGTTTCGTTTTAGGATTGAAGTCCAGTATTTAGGAATTTCTTTATTTCTATGGTCTTGTCCCATGGATGGAAAATTGATGGATATCTGGCAGCTCTCTGTCAAATGTGAAAATTGGAAATTAACCTTGCAAGATAATGGCAGCTCTCTGTCAAATGTGAAGAAAATGAAGACATCTATTTATAGGTATGCATGCAACTTGCAAGTGTATGCATATAAAATATGAAATGAGAATACCATTAGGGAGAAAATACTTTATAAAAGAATAGGGAGGATACGGAGTTTTCTTGAAGGAACAGATGCGAGAACAAAGGTTTATAAGAAAAACAGTCCAAGTTCTCAACGAAGTAGAGAAGTTACAAAATCCTTGTCTAAGCCTAGGCACTCCAAAGGCTCCAGAAGTTGTGAAAAAAAGTCCTGAAAGAATCAATAAAAGATTTATTTCCAAATTGGAAAAAAATATAGATAAAGATGCAGTATCAAATTACTCCCTCCAACATGTATCAACCTCAAAGATTCAAATTGTTCGAGATTTTTTCCATGTTCATGATAGTATTAATCATGTTTTTTTTTTAGAATTGATAGTAGTGGTCATTTAATAAAAATGCAAAAAGTCCATTGTCTGAAATTTTGTCAGAAATGCAAATCTCTAGTTGTTTTAAACATTCATGTGTGCTAGCCTTCATTTGAAGTTCGAGATAACTGTCTGTTTACAGTTCCATATTGCTACTCTAAACAACATTCAAATGCATTCAAGTATACTACCCTGTATAATTTATTACTCCTGCTTCAGGTTCCTATTGATTCATGTTACATTGGGTCACACAATTCTGCATTTCTTCAGCAGGTCTGTACATTGTTTTGTACTGTTAATGGACCTTTTATTTTCCCTCATAGTCTTACTATCCTATCCTCTATTTATTTGCTGACAGTAGTTTGATTCATGATGCTGTATAGGCTTCTTATATAACTGGCGGAGTATATTTGAAGCCTCAACAAATGGACGGGCTATTTCAATATCTCTCTGTAAGTTATGTTTGTCGGTGGCTTTCTATTTCTCCCTCCAACTTCAAAGTGTCCGTTTACTTTTCTCATAGGCTCAGGGTTTTAAGTTACAGATTATTGGATTCAACAACTTATTTGAAAACTTCGATTGGATGTTGTCCATGAGGCTTTCCCTTTTTCTAAATAATATCTAGAGCCCTGATGTGATATTGTGTTCTTTTTCTGTAGACTGTTTTTGCTACCGATTTGCATTCCCGAACCTTTTTACAGCTTCCAAAGTCCGTTGGTGTGGATTTTCGAGCATCGTAAGTTGGAGTCAGTCTTGTGAATATATGCTTCTGTGGTTTGTGCATAATATTTGCTCTGCTTACTGTGACCTTTTATCGTTTGAACCTCTTATCGTAATTTGTTCCTTTTCTATATCCAAAAGATAAGGAAATTGCTTGTGTTTAATAAATTAAGAACTTGCAGGTGTTTTTGCCACAAGAAAACAATTGATATGGGTTATGTCTGTTCTGTTTGCTTATCTATATTCTGCCAGCATCACAAGAAATGTTCTACCTGTGGGTAAGTGAATGTCAACACCGTAATTATCATTTTAGTACATTAAAATTTCTTGAAAGGTAATTTGGCTTTTGAGAATGTTGTCATATGTTGGGATTATAACTGTGGATATGAAGAGGAAGCTGATTTTTGAGAAGTCATTATGCTAGAAATTTTTTTTCTTGGCTAAATAATGTTTGTACTCGGGAAATTTTGGAAGAACACTTCGCTATGACCTGATGTCATGTCATGACACATGAGGAAGCTTTGGAACTTCGTACATGTTATCTTGCCCATGGATAATGGTTGCCTAAATACAATGCTAAAAGATTCTGTCGCCTCAAAAATTTTCCATCCTTTCTCTAAACCCACTTTCTCTCTAAAATCTCCCAAGGAATTGCCCTAAATATGCCTCTGTCTTCTTTCCTCCTCCTTCAGTGCTGCGCCCTTCCGGCACCATGAAGTTTCTTCAATGATTCCTTCGGTTTGCGATGCAAATTTTGATGGTTGTCCTTTTTGGCCACTTCGCGTTTTTACTCCCTGCATATCAACTAGCCCTCTCATTGGTGCTATGCTAACCCATGGCATGAAGACAACTCCTCATTCGATACCATTTCCTTTGGCGCTTCTAGCGGTCGCGACTTGGCAACTTGTTGTCGATCATGACGTGTTGTGAGCAATGACATCTTCCTCTCTGGCATATTTGTCTCCATTTAGCATTTTTTTCACAGGAATCACATCACTCCTCCTATTCATACTTGACCTTTACCCGACACCAGCATCTATCGCTTTGTCTACTCTTTACCGGCCAACTTCCGAGTTTTGAGATTTGAGGAATTTTTTTTTGAAATAAGGGTAACCATGTCCGTCCCTAGGCCAGACACCGAAAGACATCGAAGGAGTAAACTCACTGGTGAGTTTCGAATTTGGGACTTTGAAGGGAGCATACTTTCAAAGCTCAAGTCTTCAATCACTGTGCCACCCCTTGGGGACAACAGAGAGAGATTGTATTTTCGGTTTTGTTTTTTGTATTTGCTTCAGATGGGCCATTGTTTATCGGTTTCTTCATTCTCTTGTTTCGATTGGCAAGTTGTGCAACACTTTCAATAATTGTTGAATTTTTGTTTTCTAACAAAAAAAAAAAAAAAAAAAATCTGTCGCTTCTCTAGTTCTTTATCAGTTTTTTTTGCTATCTTGCCGCCATAGTTTAAACTCTTGGATTTGAATTTCGGATAGTAAGAAATTATAATTTTTAGACAACTTTGATCAAATAAGGGGGTAATACAATGCAAAAAAAGACCCTTCAGAAATGCTCAGACAACAACATTGGACATTGTTGGCTTATTATTGCGTAGAGAATTTCTGACGAGTGTCTATATTCTATAGTACGTTTTTCTCCTTCAAACAAGGCTTTTGTGATTATTATTGACGAGTTTGATTTCATTCAGGTCAGTTTTTGGTGAAACCCCAGTAGAAGTCGATTCAGTGTCTAAACAGAAGAGAAAAACTCCAGAAGCATGATTTCACTGTACCTGTAAGTTGTGAAAATGTTGATGGATCATTTCATGAAATTTTAGAGTTATTTTAACATGACTTTGTACTGACTATTTTGAGCTATTTGGAATTAGAAATTGTTTTTGCCAAATTATGGAATTTATTTCATATAGGCTTGAGCAGGAGACGAATTAAAACAACGGTTGCTGAAAAAGGGTTGGCTGTTTGCTTTGACATCGGATGATGCAATCATGAGTTTGAACATTCTAAACTAGCAGTTAAACTCGGATGGGGTAGTATGGAATGACAGAAAGCAAGGTCGTTCACCCGTATTCATCTCTACAGTTTGACATTAATCTGGTAACGAAGATTTCTGTGCTGGAAAAGTTTTGAAGTATGCATAAATTAAGTTTTTTCTTTCGGTTTGACAACATTTCATAAATTGCTGATTTTTAGTGACCTGAAATACGTTATTAGTTTACTCTTTAGTAGGACCTCATATGTTGAGATTTCACATCTGAAACAAACCAGTTTATGTACTAATCAAGGAGGATTCGAGAGCTTCCATTACTAATTAGATAAACACTCGCCTTCTCTGATCCTAAATGCAAAATGACCAACGACAATTGGGGTGCAC

mRNA sequence

ATAACCCATTTCTAATCAACCATCCAGTGGAAAAGAAGGGTCACCCGGTTCGATTGGGTTTCTTCTCCGTAAACTGATCCGACACGTTTTTGCCTCTATTACACTTGGCGTCTTCTCTCCGTTGCCTTTTTCTGAAACAACCATGGCTTCTGCACCTTTGAAACTCTATGCAGATGATGTGAGCCTTTTGGTGGTTTTGCTGGATACGAATCCATTTTTCTGGAGCACATCTTCTCTCCCATTCTCCAAGTTTCTCTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTTATGAATCAACTTAATGAGGTTGTGGTTATTGGTACTGGATATGCCTCGTGTAAGTATCTATATAACTCGTCTTCGCATTCAAATCGTGGTCTTGAAGATGGTAGAATGCCTGCACTTTGTATTCGTTTATTGAAGAATTTGGAGGAGTTCATGATTGGGGATGAGAAGTCCATCAAGGAAGATCCCAGAGGAGGGACTATGTCTTCACTTCTATCTGGATCACTCTCCATGGCCTTGTGTTATATACAGAAAGTTTTCCGCTCGGGGTCACTCCATCCCCATCCTCGAATCCTTTGCTTGCAGGGATCCCCAGATGGACCTGAACAATATGTCGCAATCATGAATGCCATCTTTTCTGCTCAACGTTCAATGGTTCCTATTGATTCATGTTACATTGGGTCACACAATTCTGCATTTCTTCAGCAGGCTTCTTATATAACTGGCGGAGTATATTTGAAGCCTCAACAAATGGACGGGCTATTTCAATATCTCTCTACTGTTTTTGCTACCGATTTGCATTCCCGAACCTTTTTACAGCTTCCAAAGTCCGTTGGTGTGGATTTTCGAGCATCGTGTTTTTGCCACAAGAAAACAATTGATATGGGTTATGTCTGTTCTGTTTGCTTATCTATATTCTGCCAGCATCACAAGAAATGTTCTACCTGTGGGTCAGTTTTTGGTGAAACCCCAGTAGAAGTCGATTCAGTGTCTAAACAGAAGAGAAAAACTCCAGAAGCATGATTTCACTGTACCTGCTTGAGCAGGAGACGAATTAAAACAACGGTTGCTGAAAAAGGGTTGGCTGTTTGCTTTGACATCGGATGATGCAATCATGAGTTTGAACATTCTAAACTAGCAGTTAAACTCGGATGGGGTAGTATGGAATGACAGAAAGCAAGGTCGTTCACCCGTATTCATCTCTACAGTTTGACATTAATCTGGTAACGAAGATTTCTGTGCTGGAAAAGTTTTGAAGTATGCATAAATTAAGTTTTTTCTTTCGGTTTGACAACATTTCATAAATTGCTGATTTTTAGTGACCTGAAATACGTTATTAGTTTACTCTTTAGTAGGACCTCATATGTTGAGATTTCACATCTGAAACAAACCAGTTTATGTACTAATCAAGGAGGATTCGAGAGCTTCCATTACTAATTAGATAAACACTCGCCTTCTCTGATCCTAAATGCAAAATGACCAACGACAATTGGGGTGCAC

Coding sequence (CDS)

ATGGCTTCTGCACCTTTGAAACTCTATGCAGATGATGTGAGCCTTTTGGTGGTTTTGCTGGATACGAATCCATTTTTCTGGAGCACATCTTCTCTCCCATTCTCCAAGTTTCTCTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTTATGAATCAACTTAATGAGGTTGTGGTTATTGGTACTGGATATGCCTCGTGTAAGTATCTATATAACTCGTCTTCGCATTCAAATCGTGGTCTTGAAGATGGTAGAATGCCTGCACTTTGTATTCGTTTATTGAAGAATTTGGAGGAGTTCATGATTGGGGATGAGAAGTCCATCAAGGAAGATCCCAGAGGAGGGACTATGTCTTCACTTCTATCTGGATCACTCTCCATGGCCTTGTGTTATATACAGAAAGTTTTCCGCTCGGGGTCACTCCATCCCCATCCTCGAATCCTTTGCTTGCAGGGATCCCCAGATGGACCTGAACAATATGTCGCAATCATGAATGCCATCTTTTCTGCTCAACGTTCAATGGTTCCTATTGATTCATGTTACATTGGGTCACACAATTCTGCATTTCTTCAGCAGGCTTCTTATATAACTGGCGGAGTATATTTGAAGCCTCAACAAATGGACGGGCTATTTCAATATCTCTCTACTGTTTTTGCTACCGATTTGCATTCCCGAACCTTTTTACAGCTTCCAAAGTCCGTTGGTGTGGATTTTCGAGCATCGTGTTTTTGCCACAAGAAAACAATTGATATGGGTTATGTCTGTTCTGTTTGCTTATCTATATTCTGCCAGCATCACAAGAAATGTTCTACCTGTGGGTCAGTTTTTGGTGAAACCCCAGTAGAAGTCGATTCAGTGTCTAAACAGAAGAGAAAAACTCCAGAAGCATGA

Protein sequence

MASAPLKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVMNQLNEVVVIGTGYASCKYLYNSSSHSNRGLEDGRMPALCIRLLKNLEEFMIGDEKSIKEDPRGGTMSSLLSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPVEVDSVSKQKRKTPEA

Homology

[Close]

BLAST of Sed0025863 vs. NCBI nr
Match: XP_022141943.1 (RNA polymerase II transcription factor B subunit 4 isoform X1 [Momordica charantia] >XP_022141944.1 RNA polymerase II transcription factor B subunit 4 isoform X1 [Momordica charantia] >XP_022141945.1 RNA polymerase II transcription factor B subunit 4 isoform X1 [Momordica charantia])

HSP 1 Score: 577.8 bits (1488), Expect = 5.4e-161
Identity = 282/295 (95.59%), Postives = 289/295 (97.97%), Query Frame = 0


Query: 1   MASAPLKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVMNQLNEVVVI 60
           MAS P KLYADDVSLL+VLLDTNPFFWSTSSLPFSKFLSHVLAFLNSIL +NQLNEVVVI
Sbjct: 1   MASVPSKLYADDVSLLMVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILDLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCIRLLKNLEEFMIGDEKSIKEDPRGGTMSSL 120
           GTGYASCKYLYNSSSHSNRGLEDGRMPALC RLLKNLEEF+I DE+S+KEDPRGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCTRLLKNLEEFVIADEQSVKEDPRGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSR FLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRAFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPVEVDSVSKQKRKTPE 296
           SCFCHKKTIDMGYVCSVCLSIFC+HHKKCSTCGSVFGETPV+VDSVSKQKRKTPE
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVDVDSVSKQKRKTPE 295

[Close]

BLAST of Sed0025863 vs. NCBI nr
Match: KAG6578972.1 (LysM domain-containing GPI-anchored protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 573.9 bits (1478), Expect = 7.8e-160
Identity = 282/295 (95.59%), Postives = 288/295 (97.63%), Query Frame = 0


Query: 1   MASAPLKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVMNQLNEVVVI 60
           MASAP KLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILV+NQLNEVVVI
Sbjct: 552 MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 611

Query: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCIRLLKNLEEFMIGDEKSIKEDPRGGTMSSL 120
           GTGYASCKYLYNSSS+SNR LEDGRMPALC RLL NLEEFMIGDE+SIKEDPRGGTMSSL
Sbjct: 612 GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIKEDPRGGTMSSL 671

Query: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMN+IFSAQRSMVPIDSC
Sbjct: 672 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNSIFSAQRSMVPIDSC 731

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA
Sbjct: 732 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 791

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPVEVDSVSKQKRKTPE 296
           SCFCHKKTIDMG+VCSVCLSIFC+HHKKCSTCGSVFGETPV VDSVSK KRKTPE
Sbjct: 792 SCFCHKKTIDMGFVCSVCLSIFCKHHKKCSTCGSVFGETPVAVDSVSKLKRKTPE 846

[Close]

BLAST of Sed0025863 vs. NCBI nr
Match: XP_023550583.1 (RNA polymerase II transcription factor B subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 573.9 bits (1478), Expect = 7.8e-160
Identity = 282/295 (95.59%), Postives = 288/295 (97.63%), Query Frame = 0


Query: 1   MASAPLKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVMNQLNEVVVI 60
           MASAP KLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILV+NQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCIRLLKNLEEFMIGDEKSIKEDPRGGTMSSL 120
           GTGYASCKYLYNSSS+SNR LEDGRMPALC RLL NLEEFMIGDE+SIKEDPRGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIKEDPRGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMN+IFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNSIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPVEVDSVSKQKRKTPE 296
           SCFCHKKTIDMG+VCSVCLSIFC+HHKKCSTCGSVFGETPV VDSVSK KRKTPE
Sbjct: 241 SCFCHKKTIDMGFVCSVCLSIFCKHHKKCSTCGSVFGETPVAVDSVSKLKRKTPE 295

[Close]

BLAST of Sed0025863 vs. NCBI nr
Match: XP_004152842.1 (general transcription and DNA repair factor IIH subunit TFB4 [Cucumis sativus] >XP_011648981.1 general transcription and DNA repair factor IIH subunit TFB4 [Cucumis sativus])

HSP 1 Score: 573.9 bits (1478), Expect = 7.8e-160
Identity = 281/295 (95.25%), Postives = 289/295 (97.97%), Query Frame = 0


Query: 1   MASAPLKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVMNQLNEVVVI 60
           MASAP KLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILV+NQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCIRLLKNLEEFMIGDEKSIKEDPRGGTMSSL 120
           GTGYASCKYLYNSSS+SN GLEDGRMPALC RLLKNLEEF+IGDE+SIKEDP+GGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVF TDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPVEVDSVSKQKRKTPE 296
           SCFCHKKTIDMGYVCSVCLSIFC+HHKKCSTCGSVFGETPVE+DSVSK KRKTPE
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRKTPE 295

[Close]

BLAST of Sed0025863 vs. NCBI nr
Match: XP_038886688.1 (general transcription and DNA repair factor IIH subunit TFB4 [Benincasa hispida] >XP_038886689.1 general transcription and DNA repair factor IIH subunit TFB4 [Benincasa hispida])

HSP 1 Score: 570.5 bits (1469), Expect = 8.6e-159
Identity = 278/295 (94.24%), Postives = 288/295 (97.63%), Query Frame = 0


Query: 1   MASAPLKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVMNQLNEVVVI 60
           MASAP KLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILV+NQLNEVVVI
Sbjct: 1   MASAPPKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCIRLLKNLEEFMIGDEKSIKEDPRGGTMSSL 120
           GTGYASCKYLYNSSS+SN GLEDGRMPALC RLL NLEEF+I DE+S+KEDP+GGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLNNLEEFVISDEQSLKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVF TDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPVEVDSVSKQKRKTPE 296
           SCFCHKKTIDMGYVCSVCLSIFC+HHKKCSTCGSVFGE+P+E+DSVSKQKRKTPE
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGESPIELDSVSKQKRKTPE 295

[Close]

BLAST of Sed0025863 vs. ExPASy Swiss-Prot
Match: Q8LF41 (General transcription and DNA repair factor IIH subunit TFB4 OS=Arabidopsis thaliana OX=3702 GN=TFB4 PE=2 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 3.4e-118
Identity = 212/299 (70.90%), Postives = 248/299 (82.94%), Query Frame = 0


Query: 1   MASAPLKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVMNQLNEVVVI 60
           M +   K Y+DDVSLLV+LLDTNP FWST+S+ FS+FLSHVLAFLN++L +NQLN+VVVI
Sbjct: 1   MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSHSNRGLEDGR---MPALCIRLLKNLEEFMIGDEKSIKEDPRGGTM 120
            TGY+SC Y+Y+SS  SN G  +     MPA+   LLK LEEF+  DE+  KE+     +
Sbjct: 61  ATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRI 120

Query: 121 -SSLLSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVP 180
            S LLSGSLSMALCYIQ+VFRSG LHP PRILCLQGSPDGPEQYVA+MN+IFSAQR MVP
Sbjct: 121 PSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVP 180

Query: 181 IDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGV 240
           IDSCYIG  NSAFLQQASYITGGV+  P+Q+DGLFQYL+T+FATDLHSR F+QLPK +GV
Sbjct: 181 IDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGV 240

Query: 241 DFRASCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPV-EVDSVSKQKRKTP 295
           DFRASCFCHKKTIDMGY+CSVCLSIFC+HHKKCSTCGSVFG++ + +  S S +KRK P
Sbjct: 241 DFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRKAP 299

[Close]

BLAST of Sed0025863 vs. ExPASy Swiss-Prot
Match: Q86IB5 (General transcription factor IIH subunit 3 OS=Dictyostelium discoideum OX=44689 GN=gtf2h3 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.4e-49
Identity = 104/257 (40.47%), Postives = 149/257 (57.98%), Query Frame = 0


Query: 34  FSKFLSHVLAFLNSILVMNQLNEVVVIGTGYASCKYLYNSSSHSNRGLEDGRMPALCIRL 93
           F+KFL H + F+N+ L++NQ N++ +I +      +++  S+      E   +     R 
Sbjct: 92  FNKFLEHFMVFINAYLMLNQENQLAIICSKIGESSFVFPQSNIDQYQQEQQELEQ---RQ 151

Query: 94  LKNLEEFMIGDEKSIK--------------EDPRGGTMSSLLSGSLSMALCYIQKVFRSG 153
           L    E +    K+I+              +  +   +SS  S S+S+ALCYI ++ R  
Sbjct: 152 LNENGELLPTPNKTIQGQILAKLQKLDLEIKHDQTDILSSSFSASMSIALCYINRIKRE- 211

Query: 154 SLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGG 213
           +    PRIL    SPD   QY+++MN IFS+Q+  +P+DSC +   +S FLQQAS++T G
Sbjct: 212 TPTIKPRILVFNISPDVSSQYISVMNCIFSSQKQSIPVDSCILSQSDSTFLQQASHLTSG 271

Query: 214 VYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCL 273
           +YLKPQ+ + L QYL T F  D  SR  L  P    VD+RASCFCHK+ +D+GYVCSVCL
Sbjct: 272 IYLKPQKQELLSQYLLTTFLLDTLSRKSLAYPTLKSVDYRASCFCHKRIVDIGYVCSVCL 331

Query: 274 SIFCQHHKKCSTCGSVF 277
           SIFC H   CSTCG+ F
Sbjct: 332 SIFCGHSSSCSTCGTKF 344

[Close]

BLAST of Sed0025863 vs. ExPASy Swiss-Prot
Match: Q13889 (General transcription factor IIH subunit 3 OS=Homo sapiens OX=9606 GN=GTF2H3 PE=1 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 1.0e-45
Identity = 114/306 (37.25%), Postives = 169/306 (55.23%), Query Frame = 0


Query: 11  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVMNQLNEVVVIGTGYA 70
           D+++LLV+++D NP +W   +L  S+F     +  V+   NS L MN+ N++ VI +   
Sbjct: 6   DELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQ 65

Query: 71  SCKYLY---------------NSSSHSNRGLEDGRMPALCIRLLKNLEEFMIGDEKSI-- 130
             ++LY               N    +  G +DG+       LL +  E ++ + K +  
Sbjct: 66  ESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGK-----YELLTSANEVIVEEIKDLMT 125

Query: 131 KEDPRGGTMSSLLSGSLSMALCYIQKVFR--SGSLHPHPRILCLQGSPDGPEQYVAIMNA 190
           K D +G    +LL+GSL+ ALCYI ++ +    +     RIL ++ + D   QY+  MN 
Sbjct: 126 KSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV 185

Query: 191 IFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRT 250
           IF+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  VF  D   R+
Sbjct: 186 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 245

Query: 251 FLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPVEVDSV 293
            L LP  V VD+RA+CFCH+  I++GYVCSVCLSIFC     C+TC + F    + +  V
Sbjct: 246 QLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF---KISLPPV 302

[Close]

BLAST of Sed0025863 vs. ExPASy Swiss-Prot
Match: Q8VD76 (General transcription factor IIH subunit 3 OS=Mus musculus OX=10090 GN=Gtf2h3 PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.0e-45
Identity = 115/305 (37.70%), Postives = 167/305 (54.75%), Query Frame = 0


Query: 11  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVMNQLNEVVVIGTGYA 70
           D+++LLV+++DTNP +W   +L  S+F     +  V+   NS L MN+ N++ VI +   
Sbjct: 6   DELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANSHLFMNRSNQLAVIASHIQ 65

Query: 71  SCKYLY---------------NSSSHSN-RGLEDGRMPALCIRLLKNLEEFMIGDEKSIK 130
             + LY               N+    N  G +DG+   L +      EE     +   K
Sbjct: 66  ESRLLYPGKNGGLGDFFGDPGNALPDCNPSGSKDGKYELLTVANEVIAEEI---KDLMTK 125

Query: 131 EDPRGGTMSSLLSGSLSMALCYIQKVFRS--GSLHPHPRILCLQGSPDGPEQYVAIMNAI 190
            D +G    +LL+GSL+ ALCYI +V ++   +     RIL ++ + D   QY+  MN I
Sbjct: 126 SDIKGQHTETLLAGSLAKALCYIHRVNKAVKDNQEMKSRILVIKAAEDSALQYMNFMNVI 185

Query: 191 FSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTF 250
           F+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  VF  D   R+ 
Sbjct: 186 FAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ 245

Query: 251 LQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPVEVDSVS 293
           L LP  + VD+RA+CFCH+  I++GYVCSVCLSIFC     C+TC + F  +   V    
Sbjct: 246 LILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPVLKAK 305

[Close]

BLAST of Sed0025863 vs. ExPASy Swiss-Prot
Match: Q05B56 (General transcription factor IIH subunit 3 OS=Bos taurus OX=9913 GN=GTF2H3 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.7e-45
Identity = 116/307 (37.79%), Postives = 168/307 (54.72%), Query Frame = 0


Query: 11  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVMNQLNEVVVIGTGYA 70
           D+++LLV+++DTNP +W   +L  S+F     +  V+   NS L MN+ N++ VI +   
Sbjct: 6   DELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQ 65

Query: 71  SCKYLY----------------NSSSHSNRGLEDGRMPALCIRLLKNLEEFMIGDEKSI- 130
             ++LY                 SS  +  G +DG+       LL    E +  + K + 
Sbjct: 66  ESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDGK-----YELLTAANEVIAEEIKDLM 125

Query: 131 -KEDPRGGTMSSLLSGSLSMALCYIQKVFR--SGSLHPHPRILCLQGSPDGPEQYVAIMN 190
            K D  G    +LL+GSL+ ALCYI ++ +    +     RIL ++ + D   QY+  MN
Sbjct: 126 TKSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMN 185

Query: 191 AIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSR 250
            IF+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  VF  D   R
Sbjct: 186 VIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQR 245

Query: 251 TFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPVEVDS 293
           + L LP  V VD+RA+CFCH+  I++GYVCSVCLSIFC     C+TC + F    + +  
Sbjct: 246 SQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF---KISLPP 303

[Close]

BLAST of Sed0025863 vs. ExPASy TrEMBL
Match: A0A6J1CM09 (RNA polymerase II transcription factor B subunit 4 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012196 PE=3 SV=1)

HSP 1 Score: 577.8 bits (1488), Expect = 2.6e-161
Identity = 282/295 (95.59%), Postives = 289/295 (97.97%), Query Frame = 0


Query: 1   MASAPLKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVMNQLNEVVVI 60
           MAS P KLYADDVSLL+VLLDTNPFFWSTSSLPFSKFLSHVLAFLNSIL +NQLNEVVVI
Sbjct: 1   MASVPSKLYADDVSLLMVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILDLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCIRLLKNLEEFMIGDEKSIKEDPRGGTMSSL 120
           GTGYASCKYLYNSSSHSNRGLEDGRMPALC RLLKNLEEF+I DE+S+KEDPRGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCTRLLKNLEEFVIADEQSVKEDPRGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSR FLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRAFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPVEVDSVSKQKRKTPE 296
           SCFCHKKTIDMGYVCSVCLSIFC+HHKKCSTCGSVFGETPV+VDSVSKQKRKTPE
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVDVDSVSKQKRKTPE 295

[Close]

BLAST of Sed0025863 vs. ExPASy TrEMBL
Match: A0A0A0LMM2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072450 PE=3 SV=1)

HSP 1 Score: 573.9 bits (1478), Expect = 3.8e-160
Identity = 281/295 (95.25%), Postives = 289/295 (97.97%), Query Frame = 0


Query: 1   MASAPLKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVMNQLNEVVVI 60
           MASAP KLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILV+NQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCIRLLKNLEEFMIGDEKSIKEDPRGGTMSSL 120
           GTGYASCKYLYNSSS+SN GLEDGRMPALC RLLKNLEEF+IGDE+SIKEDP+GGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVF TDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPVEVDSVSKQKRKTPE 296
           SCFCHKKTIDMGYVCSVCLSIFC+HHKKCSTCGSVFGETPVE+DSVSK KRKTPE
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRKTPE 295

[Close]

BLAST of Sed0025863 vs. ExPASy TrEMBL
Match: A0A6J1JZK7 (RNA polymerase II transcription factor B subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111489720 PE=3 SV=1)

HSP 1 Score: 570.1 bits (1468), Expect = 5.4e-159
Identity = 280/295 (94.92%), Postives = 287/295 (97.29%), Query Frame = 0


Query: 1   MASAPLKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVMNQLNEVVVI 60
           MASAP KLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILV+NQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCIRLLKNLEEFMIGDEKSIKEDPRGGTMSSL 120
           GTGYASCKYLYNSSS+SNR LEDGRMPALC RLL NLEEFMIGDE+SIKEDPR GTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIKEDPREGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCY+QKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMN+IFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYLQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNSIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPVEVDSVSKQKRKTPE 296
           SCFCHKKTIDMG+VCSVCLSIFC+HHKKCSTCGSVFGETPV VDSVSK KRKTPE
Sbjct: 241 SCFCHKKTIDMGFVCSVCLSIFCKHHKKCSTCGSVFGETPVAVDSVSKLKRKTPE 295

[Close]

BLAST of Sed0025863 vs. ExPASy TrEMBL
Match: A0A6J1FJQ6 (RNA polymerase II transcription factor B subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111444867 PE=3 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 2.7e-158
Identity = 281/296 (94.93%), Postives = 288/296 (97.30%), Query Frame = 0


Query: 1   MASAPLKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVMNQLNEVVVI 60
           MASAP KLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILV+NQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCIRLLKNLEEFMIGDEKSIKEDPRGGTMSSL 120
           GTGYASCKYLYNSSS+SNR LEDGRMPALC RLL NLEEFMIGDE+SI+EDPRGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMN+IFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNSIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPVEVDS-VSKQKRKTPE 296
           SCFCHKKTIDMG+VCSVCLSIFC+HHKKCSTCGSVFGETPV VDS VSK KRKTPE
Sbjct: 241 SCFCHKKTIDMGFVCSVCLSIFCKHHKKCSTCGSVFGETPVAVDSVVSKLKRKTPE 296

[Close]

BLAST of Sed0025863 vs. ExPASy TrEMBL
Match: A0A1S3B4H7 (LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 4 OS=Cucumis melo OX=3656 GN=LOC103485913 PE=3 SV=1)

HSP 1 Score: 567.4 bits (1461), Expect = 3.5e-158
Identity = 278/295 (94.24%), Postives = 287/295 (97.29%), Query Frame = 0


Query: 1   MASAPLKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVMNQLNEVVVI 60
           MASAP KLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILV+NQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCIRLLKNLEEFMIGDEKSIKEDPRGGTMSSL 120
           GTGYASCKYLYNSSS+SN GLEDGRMPALC RLLKNLEEF+IGDE+SIKEDP+GGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMNAIFSAQRSMV IDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYL+TVF TDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPVEVDSVSKQKRKTPE 296
           SCFCH KTIDMGYVCSVCLSIFC+HHKKCSTCGSVFGETPVE+DS+SK KRKTPE
Sbjct: 241 SCFCHXKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE 295

[Close]

BLAST of Sed0025863 vs. TAIR 10
Match: AT1G18340.1 (basal transcription factor complex subunit-related )

HSP 1 Score: 426.0 bits (1094), Expect = 2.4e-119
Identity = 212/299 (70.90%), Postives = 248/299 (82.94%), Query Frame = 0


Query: 1   MASAPLKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVMNQLNEVVVI 60
           M +   K Y+DDVSLLV+LLDTNP FWST+S+ FS+FLSHVLAFLN++L +NQLN+VVVI
Sbjct: 1   MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSHSNRGLEDGR---MPALCIRLLKNLEEFMIGDEKSIKEDPRGGTM 120
            TGY+SC Y+Y+SS  SN G  +     MPA+   LLK LEEF+  DE+  KE+     +
Sbjct: 61  ATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRI 120

Query: 121 -SSLLSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVP 180
            S LLSGSLSMALCYIQ+VFRSG LHP PRILCLQGSPDGPEQYVA+MN+IFSAQR MVP
Sbjct: 121 PSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVP 180

Query: 181 IDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGV 240
           IDSCYIG  NSAFLQQASYITGGV+  P+Q+DGLFQYL+T+FATDLHSR F+QLPK +GV
Sbjct: 181 IDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGV 240

Query: 241 DFRASCFCHKKTIDMGYVCSVCLSIFCQHHKKCSTCGSVFGETPV-EVDSVSKQKRKTP 295
           DFRASCFCHKKTIDMGY+CSVCLSIFC+HHKKCSTCGSVFG++ + +  S S +KRK P
Sbjct: 241 DFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRKAP 299

The following BLAST results are available for this feature:

BLAST of Sed0025863 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141943.1	5.4e-161	95.59	RNA polymerase II transcription factor B subunit 4 isoform X1 [Momordica charant...	[more]
KAG6578972.1	7.8e-160	95.59	LysM domain-containing GPI-anchored protein 1, partial [Cucurbita argyrosperma s...	[more]
XP_023550583.1	7.8e-160	95.59	RNA polymerase II transcription factor B subunit 4 [Cucurbita pepo subsp. pepo]	[more]
XP_004152842.1	7.8e-160	95.25	general transcription and DNA repair factor IIH subunit TFB4 [Cucumis sativus] >...	[more]
XP_038886688.1	8.6e-159	94.24	general transcription and DNA repair factor IIH subunit TFB4 [Benincasa hispida]...	[more]

BLAST of Sed0025863 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LF41	3.4e-118	70.90	General transcription and DNA repair factor IIH subunit TFB4 OS=Arabidopsis thal...	[more]
Q86IB5	3.4e-49	40.47	General transcription factor IIH subunit 3 OS=Dictyostelium discoideum OX=44689 ...	[more]
Q13889	1.0e-45	37.25	General transcription factor IIH subunit 3 OS=Homo sapiens OX=9606 GN=GTF2H3 PE=...	[more]
Q8VD76	1.0e-45	37.70	General transcription factor IIH subunit 3 OS=Mus musculus OX=10090 GN=Gtf2h3 PE...	[more]
Q05B56	1.7e-45	37.79	General transcription factor IIH subunit 3 OS=Bos taurus OX=9913 GN=GTF2H3 PE=2 ...	[more]

BLAST of Sed0025863 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CM09	2.6e-161	95.59	RNA polymerase II transcription factor B subunit 4 isoform X1 OS=Momordica chara...	[more]
A0A0A0LMM2	3.8e-160	95.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072450 PE=3 SV=1	[more]
A0A6J1JZK7	5.4e-159	94.92	RNA polymerase II transcription factor B subunit 4 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FJQ6	2.7e-158	94.93	RNA polymerase II transcription factor B subunit 4 OS=Cucurbita moschata OX=3662...	[more]
A0A1S3B4H7	3.5e-158	94.24	LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 4 OS=Cucum...	[more]

BLAST of Sed0025863 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18340.1	2.4e-119	70.90	basal transcription factor complex subunit-related	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004600	TFIIH subunit Tfb4/GTF2H3	PFAM	PF03850	Tfb4	coord: 13..273 e-value: 3.9E-92 score: 308.6
IPR004600	TFIIH subunit Tfb4/GTF2H3	PANTHER	PTHR12831	TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED	coord: 1..280
IPR036465	von Willebrand factor A-like domain superfamily	GENE3D	3.40.50.410	von Willebrand factor, type A domain	coord: 10..221 e-value: 2.5E-62 score: 212.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025863.1	Sed0025863.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0070816	phosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000439	transcription factor TFIIH core complex
cellular_component	GO:0005675	transcription factor TFIIH holo complex
molecular_function	GO:0046872	metal ion binding