Sed0025850 (gene) Chayote v1

Overview


Name	Sed0025850
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG07: 2821963 .. 2824373 (-)
RNA-Seq Expression	Sed0025850
Synteny	Sed0025850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATTTCATTTTCTCGACTGGGAAATTCCATCCCCTTCTCCGGAATTTTCAGGTAATTCCTCAAAAAAAGTTTCTAGAAATTCTCTTACGATTATTAGTTGCCGAAGATTTACTGTAAATGTTAAACTTTATGATAAAGAACTGGGGATTTTCCCGATGAATAATGTTGGTTTTGTTGACAATCGCGTTGGTCGCATTCTTGTTAATTTTTAATATTGATATCATGGGGAGTGTATGGATTTCATTATGTGTATCATTATTGTTTTTACGAGATCCTTCGTTGATTATCCAACACCGTTAATCAGCCAAATTTTGTTTATTTTCTCAGCCCTTTATCGTCTAGATTTTGTTTATGATTTGGAAATTTGGAGTTTTGCTCCTCTAAACTCGTTGCACCATCAACCCATCTCTAGAATTAGGCACCGGAAGACATTGTTGAACCGAAAGTGAAATTGGGGGTCGACTTGCGAATTAATTCCCACGGCCACTTTGAACTTAAGACCTCAGGGGGAGCACACCCTCACGGTCCCGATGCTCAACTACCGTGCCACACCTGGGGGACTCATATACTTACCAATTTGATTTTGTCGCAGATTGTCTTCTCATCCATTTGTCTACTATCATTCTGATTCTTTTGTCTCACGATTCTTCCGGCTAACAACACTAATTAGTGTGTTGCTCTTCCCTTCTCTCCTCTTACTATATCTAACAGAAGGTGTGATTAACTGGTCTATCGTATTTTCTTATGCATTACCGAGCCCTGTCATTCTCTCATTGTTAAGCGTGTTGTTCTCGTCCTCACTTATCTCCTCTCAACACCTACCGTAGGCGAGATTATTCCGGTCTCACTCTTGCATATTGGGCTTCTCTTCTCTTTTCTCTCTCTCCCATAGAGCACTGATTTCACCCTTTGTTTTTAGAACAATTCTACATGATGATAGAAATCCACTTCTGTTCCCTTTTCTTTCTATCAAGGACATATGGAAGGTCTTTCCTTCTCATCTCAAATTCTTTGGCGACATCGTCAAGAAAGGCTACACCAACATACCACTCTCTCTTATTCCTTTGTGTATTAGCTTGTATTTACTGGTTTATCCTACGGTTAATTAAAAGAACAATCAATGTAACACTTTCATATATCAATGAATTGGTTTGTTTCCTATAAAAAAGCTGGGGTTTTGGTAGCTTTTGAGGGTGTTTGTGGCTTTTTTATTTCGTTTACTCGAGAGGTGCCAAATTATAAAATATAAAATTGTAGTTACTTTGCTTTGCTTATGATGCATTACTAAGATTCATTAAGGTGAGGGTGTTTTAATGGGAAGTTATGATTTAGTACGAACCATCATAGCTTGGCCTAGTGGTCAAAGAGGATTTTGAGAATTAAGAATTTTTTGATTCAATCCATGGTGGCCACCAACGTAGGAATTAATTTCCTTGACAACCGAATATCGTAGGGTCAAGATAATAATAGAAAAAAAAACTATGATTTAGTATTTGATGTGTTCTGAGTTTCTTCTTCCATGTGAGCTGACGGATTCGAATTCTAAAACATCAGTAGTTAAGACCCCGTTTGATAACAATTTGGTTTTTGTTTTTGAAATTTAAGTCTATTCTAACTCAAATTTTCTACAATGTGTTCCACCTTTCCTACAATGTATCCATCTTTCCTTAAGAAAAGTATGTGAATGATAAACAACTTTAAAAAACAAAAACAAGCTTTTGGAAGCTACTTTTTTTTTGTTTCTAAATTTTGGTTTGATTTCTACAAATATAGGTGAGAGGTAGATATCCAAGTAAGAAAAAACACATGGTAAGATAATTGTTGTAGGCTTAAAGTTCAAAAATCAAATGGTTATCAAACAAGGCCTAAATGATCCAAATACAGTTCTTGACGGTGTTTAGTGGATTTGTTCCTGCCTTATTTTAAGATGACAACTTTAGTAGTGTTCTGATAAAACAGTTTTTGGTGGATGGAACAAAATTTCAACTGAACTTGGTTTTGTTAACTACTTTTTCAAATTTGTTCTCTTGATGTTTTCATGGATGGGCTATTTCAAATTATTCATGTGTGTGAATATCGATTTTGAGTGCAGTGCATACTAACTCTGAATATTAAAAAAGTGCAGAATAACCTTAACTTTACAACCCGCCTAATTATTTCTAACTGAAATTTAAAAACATAAGCATTAAGTTGTAGGACAACTTTAATGTTTTTCTTTCTACATATAGGCAACTGGAACAAGAGATGGAAACTGTCATAAGTGTTTTGCAGCCTGGAGCTTTGGGAATTATTGAACACAAGTTTTCTGTGGAGGAGATCCGCCGGGCTCAATCCACTGTTCGCGAAGCAGTTAATAATTGGCGAAGGAATGCAAGTATTGAAAAACAAAGTAGTATTTACAAATAA

mRNA sequence

ATGGCGATTTCATTTTCTCGACTGGGAAATTCCATCCCCTTCTCCGGAATTTTCAGGCAACTGGAACAAGAGATGGAAACTGTCATAAGTGTTTTGCAGCCTGGAGCTTTGGGAATTATTGAACACAAGTTTTCTGTGGAGGAGATCCGCCGGGCTCAATCCACTGTTCGCGAAGCAGTTAATAATTGGCGAAGGAATGCAAGTATTGAAAAACAAAGTAGTATTTACAAATAA

Coding sequence (CDS)

ATGGCGATTTCATTTTCTCGACTGGGAAATTCCATCCCCTTCTCCGGAATTTTCAGGCAACTGGAACAAGAGATGGAAACTGTCATAAGTGTTTTGCAGCCTGGAGCTTTGGGAATTATTGAACACAAGTTTTCTGTGGAGGAGATCCGCCGGGCTCAATCCACTGTTCGCGAAGCAGTTAATAATTGGCGAAGGAATGCAAGTATTGAAAAACAAAGTAGTATTTACAAATAA

Protein sequence

MAISFSRLGNSIPFSGIFRQLEQEMETVISVLQPGALGIIEHKFSVEEIRRAQSTVREAVNNWRRNASIEKQSSIYK

Homology

[Close]

BLAST of Sed0025850 vs. NCBI nr
Match: XP_038876733.1 (uncharacterized protein LOC120069118 [Benincasa hispida])

HSP 1 Score: 132.1 bits (331), Expect = 2.0e-27
Identity = 66/77 (85.71%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MAISFSRLGNSIPFSGIFRQLEQEMETVISVLQPGALGIIEHKFSVEEIRRAQSTVREAV 60
          M ISFSRLGNSIPFSG+FRQLEQEMETVI VLQPG LGIIEHKFS EE+R+AQSTVREAV
Sbjct: 1  MPISFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRQAQSTVREAV 60

Query: 61 NNWRRNASIEKQSSIYK 78
          NNWRRN SIEKQS  +K
Sbjct: 61 NNWRRNTSIEKQSKYFK 77

[Close]

BLAST of Sed0025850 vs. NCBI nr
Match: XP_011659338.1 (uncharacterized protein LOC101214859 [Cucumis sativus] >KGN44894.1 hypothetical protein Csa_015958 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 2.7e-27
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MAISFSRLGNSIPFSGIFRQLEQEMETVISVLQPGALGIIEHKFSVEEIRRAQSTVREAV 60
          MAISFSRLG+SIPFSG+FRQLEQEMETVI VLQPG LGIIEHKFS EE+RRAQSTVREAV
Sbjct: 1  MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60

Query: 61 NNWRRNASIEKQSSI 76
          NNWRRN  IEKQSSI
Sbjct: 61 NNWRRNTIIEKQSSI 75

[Close]

BLAST of Sed0025850 vs. NCBI nr
Match: XP_008451625.1 (PREDICTED: uncharacterized protein LOC103492858 [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 2.7e-27
Identity = 67/75 (89.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MAISFSRLGNSIPFSGIFRQLEQEMETVISVLQPGALGIIEHKFSVEEIRRAQSTVREAV 60
          MAISFSRLGNSIPFSG+FRQLEQEMETVI VLQPG LGIIEHKFS EE+RRAQSTVREAV
Sbjct: 1  MAISFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60

Query: 61 NNWRRNASIEKQSSI 76
          NNWRRN  IEKQS I
Sbjct: 61 NNWRRNTLIEKQSCI 75

[Close]

BLAST of Sed0025850 vs. NCBI nr
Match: KAG6593168.1 (hypothetical protein SDJN03_12644, partial [Cucurbita argyrosperma subsp. sororia] >KAG6593174.1 hypothetical protein SDJN03_12650, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025565.1 hypothetical protein SDJN02_12061, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.0 bits (328), Expect = 4.5e-27
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MAISFSRLGNSIPFSGIFRQLEQEMETVISVLQPGALGIIEHKFSVEEIRRAQSTVREAV 60
          M + FSRLGNSIPFSG+FRQLEQEMETVI VLQPG LGIIEHKFS EEIRRAQ+TVREAV
Sbjct: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV 60

Query: 61 NNWRRNASIEKQSSI 76
          NNWRRN SIEKQSS+
Sbjct: 61 NNWRRNTSIEKQSSV 75

[Close]

BLAST of Sed0025850 vs. NCBI nr
Match: XP_023513754.1 (uncharacterized protein LOC111778268 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.2 bits (326), Expect = 7.7e-27
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MAISFSRLGNSIPFSGIFRQLEQEMETVISVLQPGALGIIEHKFSVEEIRRAQSTVREAV 60
          M + FSRLGNSIPFSG+FRQLEQEMETVI VLQPG LGIIEHKFS EEIRRAQ+TVREAV
Sbjct: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV 60

Query: 61 NNWRRNASIEKQSSI 76
          NNWRRN SIEKQSS+
Sbjct: 61 NNWRRNTSIEKQSSM 75

[Close]

BLAST of Sed0025850 vs. ExPASy TrEMBL
Match: A0A0A0K7N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394630 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-27
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MAISFSRLGNSIPFSGIFRQLEQEMETVISVLQPGALGIIEHKFSVEEIRRAQSTVREAV 60
          MAISFSRLG+SIPFSG+FRQLEQEMETVI VLQPG LGIIEHKFS EE+RRAQSTVREAV
Sbjct: 1  MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60

Query: 61 NNWRRNASIEKQSSI 76
          NNWRRN  IEKQSSI
Sbjct: 61 NNWRRNTIIEKQSSI 75

[Close]

BLAST of Sed0025850 vs. ExPASy TrEMBL
Match: A0A1S3BRC3 (uncharacterized protein LOC103492858 OS=Cucumis melo OX=3656 GN=LOC103492858 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-27
Identity = 67/75 (89.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MAISFSRLGNSIPFSGIFRQLEQEMETVISVLQPGALGIIEHKFSVEEIRRAQSTVREAV 60
          MAISFSRLGNSIPFSG+FRQLEQEMETVI VLQPG LGIIEHKFS EE+RRAQSTVREAV
Sbjct: 1  MAISFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60

Query: 61 NNWRRNASIEKQSSI 76
          NNWRRN  IEKQS I
Sbjct: 61 NNWRRNTLIEKQSCI 75

[Close]

BLAST of Sed0025850 vs. ExPASy TrEMBL
Match: A0A6J1H9I7 (uncharacterized protein LOC111460845 OS=Cucurbita moschata OX=3662 GN=LOC111460845 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.1e-26
Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 5  FSRLGNSIPFSGIFRQLEQEMETVISVLQPGALGIIEHKFSVEEIRRAQSTVREAVNNWR 64
          FSRLGNSIPFSG+FRQLEQEMETVI VLQPG LGIIEHKFS EEIR+AQ+TVREAVNNWR
Sbjct: 5  FSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRQAQATVREAVNNWR 64

Query: 65 RNASIEKQSSI 76
          RN SIEKQSS+
Sbjct: 65 RNTSIEKQSSM 75

[Close]

BLAST of Sed0025850 vs. ExPASy TrEMBL
Match: A0A6J1KSW4 (uncharacterized protein LOC111497926 OS=Cucurbita maxima OX=3661 GN=LOC111497926 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MAISFSRLGNSIPFSGIFRQLEQEMETVISVLQPGALGIIEHKFSVEEIRRAQSTVREAV 60
          M + FSRLGNSIPFSG+FRQLEQEMETVI VLQPG LGIIEHKFS EEIR AQ+TVREAV
Sbjct: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRWAQATVREAV 60

Query: 61 NNWRRNASIEKQSSI 76
          NNWRRN  IEKQSS+
Sbjct: 61 NNWRRNTCIEKQSSM 75

[Close]

BLAST of Sed0025850 vs. ExPASy TrEMBL
Match: A0A6J1D4Y2 (uncharacterized protein LOC111017642 OS=Momordica charantia OX=3673 GN=LOC111017642 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.1e-25
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MAISFSRLGNSIPFSGIFRQLEQEMETVISVLQPGALGIIEHKFSVEEIRRAQSTVREAV 60
          M IS SRLGNSIPFSG FRQLEQEM TVI VLQPG LGIIEHKFS EE+R+AQSTVREAV
Sbjct: 1  MPISLSRLGNSIPFSGTFRQLEQEMXTVIRVLQPGPLGIIEHKFSAEEMRQAQSTVREAV 60

Query: 61 NNWRRNASIEKQSSI 76
          NNW RN SIEKQSSI
Sbjct: 61 NNWXRNTSIEKQSSI 75

[Close]

BLAST of Sed0025850 vs. TAIR 10
Match: AT3G62920.1 (unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 92.0 bits (227), Expect = 2.2e-19
Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 3  ISFSRLGNSIPFSGIFRQLEQEMETVISVLQPGALGIIEHKFSVEEIRRAQSTVREAVNN 62
          +S  R+  ++PFSGI RQLE+E ETVI+VLQPG LGIIEHKFS +EIR A++TV  AV++
Sbjct: 1  MSIYRIARALPFSGILRQLEKEAETVINVLQPGPLGIIEHKFSAQEIREAKATVSRAVDS 60

Query: 63 WRRNASIEKQSSIYK 78
          WRR++ +E  + + K
Sbjct: 61 WRRHSEVEHANGLLK 75

The following BLAST results are available for this feature:

BLAST of Sed0025850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876733.1	2.0e-27	85.71	uncharacterized protein LOC120069118 [Benincasa hispida]	[more]
XP_011659338.1	2.7e-27	89.33	uncharacterized protein LOC101214859 [Cucumis sativus] >KGN44894.1 hypothetical ...	[more]
XP_008451625.1	2.7e-27	89.33	PREDICTED: uncharacterized protein LOC103492858 [Cucumis melo]	[more]
KAG6593168.1	4.5e-27	86.67	hypothetical protein SDJN03_12644, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023513754.1	7.7e-27	86.67	uncharacterized protein LOC111778268 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0025850 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7N1	1.3e-27	89.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394630 PE=4 SV=1	[more]
A0A1S3BRC3	1.3e-27	89.33	uncharacterized protein LOC103492858 OS=Cucumis melo OX=3656 GN=LOC103492858 PE=...	[more]
A0A6J1H9I7	4.1e-26	88.73	uncharacterized protein LOC111460845 OS=Cucurbita moschata OX=3662 GN=LOC1114608...	[more]
A0A6J1KSW4	1.2e-25	84.00	uncharacterized protein LOC111497926 OS=Cucurbita maxima OX=3661 GN=LOC111497926...	[more]
A0A6J1D4Y2	2.1e-25	85.33	uncharacterized protein LOC111017642 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Sed0025850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62920.1	2.2e-19	57.33	unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37235	ZINC METALLOPROTEINASE AUREOLYSIN	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025850.1	Sed0025850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination