Sed0025837 (gene) Chayote v1

Overview
NameSed0025837
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG09: 488484 .. 488765 (+)
RNA-Seq ExpressionSed0025837
SyntenySed0025837
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTTCTAGGAAATGTGTCCGAACACTTGAAACTTGCAGGAATGAAGCTTCTACAAGACATGTATGCATTGATGATGGCAACAGCTTCAGAAAGTCTTTTCATCGAGAAGACTAGTAACATATTCGATGACCATTCGATATCGGTTGATAATCAAGATCGACGATCCCACGATGGTAAACTGGGGGATAAGTCATCGACAAAGTCGAATGAAAGTAATCAGCCTTCAAGTTATGGTCAAGAAAAGATTGTGCTTGGGGAAATAGCTTCTTCTATTTAA

mRNA sequence

ATGAGTTTTCTAGGAAATGTGTCCGAACACTTGAAACTTGCAGGAATGAAGCTTCTACAAGACATGTATGCATTGATGATGGCAACAGCTTCAGAAAGTCTTTTCATCGAGAAGACTAGTAACATATTCGATGACCATTCGATATCGGTTGATAATCAAGATCGACGATCCCACGATGGTAAACTGGGGGATAAGTCATCGACAAAGTCGAATGAAAGTAATCAGCCTTCAAGTTATGGTCAAGAAAAGATTGTGCTTGGGGAAATAGCTTCTTCTATTTAA

Coding sequence (CDS)

ATGAGTTTTCTAGGAAATGTGTCCGAACACTTGAAACTTGCAGGAATGAAGCTTCTACAAGACATGTATGCATTGATGATGGCAACAGCTTCAGAAAGTCTTTTCATCGAGAAGACTAGTAACATATTCGATGACCATTCGATATCGGTTGATAATCAAGATCGACGATCCCACGATGGTAAACTGGGGGATAAGTCATCGACAAAGTCGAATGAAAGTAATCAGCCTTCAAGTTATGGTCAAGAAAAGATTGTGCTTGGGGAAATAGCTTCTTCTATTTAA

Protein sequence

MSFLGNVSEHLKLAGMKLLQDMYALMMATASESLFIEKTSNIFDDHSISVDNQDRRSHDGKLGDKSSTKSNESNQPSSYGQEKIVLGEIASSI
Homology
BLAST of Sed0025837 vs. NCBI nr
Match: XP_038874738.1 (uncharacterized protein LOC120067276 [Benincasa hispida])

HSP 1 Score: 94.4 bits (233), Expect = 5.7e-16
Identity = 53/72 (73.61%), Postives = 58/72 (80.56%), Query Frame = 0

Query: 16  MKLLQDMYALMMATASESLFIEKTSNIFDDHSISVDNQDRRS----HDGKLGDKSSTKSN 75
           +K+LQDMY LMMAT SE+L+IEKTSN+ D  S SVDNQDRRS    HDGKLGDKSSTKS 
Sbjct: 82  IKVLQDMYILMMATTSETLYIEKTSNVLDGQSSSVDNQDRRSREQHHDGKLGDKSSTKSY 141

Query: 76  ESNQPSSYGQEK 84
           ESN PSSY  EK
Sbjct: 142 ESNNPSSYATEK 153

BLAST of Sed0025837 vs. NCBI nr
Match: XP_023006667.1 (uncharacterized protein LOC111499323 [Cucurbita maxima])

HSP 1 Score: 90.5 bits (223), Expect = 8.2e-15
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 16  MKLLQDMYALMMATASESLFIEKTSNIFDDHSISVDNQDRRS----HDGKLGDKSSTKSN 75
           +KLLQDMY LMMAT SESL+IEKTSN+ D  SISVDNQD+RS    HDGK G KSSTKS 
Sbjct: 81  IKLLQDMYILMMATTSESLYIEKTSNVLDGQSISVDNQDQRSREQYHDGKQGGKSSTKSY 140

Query: 76  ESNQPSSYGQEK 84
           ESN PSS+  EK
Sbjct: 141 ESNHPSSHAPEK 152

BLAST of Sed0025837 vs. NCBI nr
Match: KAG7013731.1 (hypothetical protein SDJN02_23898 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-14
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 16  MKLLQDMYALMMATASESLFIEKTSNIFDDHSISVDNQDRRS----HDGKLGDKSSTKSN 75
           +KLLQDMY +MMAT SESL+IEKTSN+ D  S+SVDNQD+RS    HDGK G KSSTKS 
Sbjct: 81  IKLLQDMYIMMMATTSESLYIEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSY 140

Query: 76  ESNQPSSYGQEK 84
           ESN PSS+  EK
Sbjct: 141 ESNHPSSHAPEK 152

BLAST of Sed0025837 vs. NCBI nr
Match: KAG6575171.1 (hypothetical protein SDJN03_25810, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-14
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 16  MKLLQDMYALMMATASESLFIEKTSNIFDDHSISVDNQDRRS----HDGKLGDKSSTKSN 75
           +KLLQDMY +MMAT SESL+IEKTSN+ D  S+SVDNQD+RS    HDGK G KSSTKS 
Sbjct: 81  IKLLQDMYIMMMATTSESLYIEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSY 140

Query: 76  ESNQPSSYGQEK 84
           ESN PSS+  EK
Sbjct: 141 ESNHPSSHAPEK 152

BLAST of Sed0025837 vs. NCBI nr
Match: XP_022959506.1 (uncharacterized protein LOC111460466 [Cucurbita moschata])

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-14
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 16  MKLLQDMYALMMATASESLFIEKTSNIFDDHSISVDNQDRRS----HDGKLGDKSSTKSN 75
           +KLLQDMY +MMAT SESL+IEKTSN+ D  S+SVDNQD+RS    HDGK G KSSTKS 
Sbjct: 81  IKLLQDMYIMMMATTSESLYIEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSY 140

Query: 76  ESNQPSSYGQEK 84
           ESN PSS+  EK
Sbjct: 141 ESNHPSSHAPEK 152

BLAST of Sed0025837 vs. ExPASy TrEMBL
Match: A0A6J1KWG6 (uncharacterized protein LOC111499323 OS=Cucurbita maxima OX=3661 GN=LOC111499323 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.0e-15
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 16  MKLLQDMYALMMATASESLFIEKTSNIFDDHSISVDNQDRRS----HDGKLGDKSSTKSN 75
           +KLLQDMY LMMAT SESL+IEKTSN+ D  SISVDNQD+RS    HDGK G KSSTKS 
Sbjct: 81  IKLLQDMYILMMATTSESLYIEKTSNVLDGQSISVDNQDQRSREQYHDGKQGGKSSTKSY 140

Query: 76  ESNQPSSYGQEK 84
           ESN PSS+  EK
Sbjct: 141 ESNHPSSHAPEK 152

BLAST of Sed0025837 vs. ExPASy TrEMBL
Match: A0A6J1H517 (uncharacterized protein LOC111460466 OS=Cucurbita moschata OX=3662 GN=LOC111460466 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 16  MKLLQDMYALMMATASESLFIEKTSNIFDDHSISVDNQDRRS----HDGKLGDKSSTKSN 75
           +KLLQDMY +MMAT SESL+IEKTSN+ D  S+SVDNQD+RS    HDGK G KSSTKS 
Sbjct: 81  IKLLQDMYIMMMATTSESLYIEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSY 140

Query: 76  ESNQPSSYGQEK 84
           ESN PSS+  EK
Sbjct: 141 ESNHPSSHAPEK 152

BLAST of Sed0025837 vs. ExPASy TrEMBL
Match: A0A5D3BXP9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001010 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.6e-10
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 0

Query: 14 AGMKLLQDMYALMMATASESLFIEKTSNIFDDHSISVDNQDRRSHDGKLGDKSSTKSNES 73
          AG+K+LQDMYA MM+  SE+L+IEKT N+ D  +        + HDGKLGDKSSTKS ES
Sbjct: 21 AGIKVLQDMYASMMSATSETLYIEKTCNVLDGLA------REQHHDGKLGDKSSTKSYES 80

Query: 74 NQPSSYGQEK 84
          N PSSY  EK
Sbjct: 81 NNPSSYAPEK 84

BLAST of Sed0025837 vs. ExPASy TrEMBL
Match: A0A6J1DSC5 (uncharacterized protein LOC111023072 OS=Momordica charantia OX=3673 GN=LOC111023072 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 16  MKLLQDMYALMMATASESLFIEKTSNIFDDHSISVDNQDRR-----SHDGKLGDKSSTKS 75
           +KLLQDMY LMMA+ +E+L+IEKT+NI D  S+SVDNQD R      HD KLGDKSS +S
Sbjct: 80  IKLLQDMYKLMMASTAETLYIEKTTNILDGQSLSVDNQDNRRPREPHHDVKLGDKSSVRS 139

BLAST of Sed0025837 vs. ExPASy TrEMBL
Match: A0A1S3C7F7 (uncharacterized protein LOC103497729 OS=Cucumis melo OX=3656 GN=LOC103497729 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 40/68 (58.82%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 16  MKLLQDMYALMMATASESLFIEKTSNIFDDHSISVDNQDRRSHDGKLGDKSSTKSNESNQ 75
           +K+LQDMYA MM+  SE+L+IEKT N+ D  +        + HDGKLGDKSSTKS ESN 
Sbjct: 74  IKVLQDMYASMMSATSETLYIEKTCNVLDGLA------REQHHDGKLGDKSSTKSYESNN 133

Query: 76  PSSYGQEK 84
           PSSY  EK
Sbjct: 134 PSSYAPEK 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038874738.15.7e-1673.61uncharacterized protein LOC120067276 [Benincasa hispida][more]
XP_023006667.18.2e-1572.22uncharacterized protein LOC111499323 [Cucurbita maxima][more]
KAG7013731.12.4e-1469.44hypothetical protein SDJN02_23898 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6575171.12.4e-1469.44hypothetical protein SDJN03_25810, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022959506.12.4e-1469.44uncharacterized protein LOC111460466 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KWG64.0e-1572.22uncharacterized protein LOC111499323 OS=Cucurbita maxima OX=3661 GN=LOC111499323... [more]
A0A6J1H5171.2e-1469.44uncharacterized protein LOC111460466 OS=Cucurbita moschata OX=3662 GN=LOC1114604... [more]
A0A5D3BXP98.6e-1060.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1DSC51.9e-0964.06uncharacterized protein LOC111023072 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A1S3C7F71.2e-0858.82uncharacterized protein LOC103497729 OS=Cucumis melo OX=3656 GN=LOC103497729 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0025837.1Sed0025837.1mRNA