Sed0025799 (gene) Chayote v1

Overview


Name	Sed0025799
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Transmembrane protein
Location	LG11: 27071656 .. 27075005 (+)
RNA-Seq Expression	Sed0025799
Synteny	Sed0025799

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAATATTCCCCGAGTAAATATTCACCATTCCTCCAAATATTCTCGGCGCCACTCCGACGGCAAATTGGACCGAGAAAACCCTCGATCAAGCTAGGGTTTATCTTCTCCACTCTTCAATCTCTCAACCTATCTTTCACCGGCGAAAATGGCGAACAAGCAACGGCCATCATCAGGGCCCTGGATCCTCGAATCAATACCCTTGATTGTTGTCATTCTCATTGCAGCTCACGTCTTCGCTATGGTATTCATTCACCAACTCTAATCCCTTCGTTGTTCGCATTGTATTCGAACTCCAATTTCGCCTAATTATTTTTGTAGGTGTACTGGATTTATAGGTTAGCATCCCAAAAACAGCCTCCCAGGGCGAAGGCACACTGAGTTACTCTGTGATTCCTTCCTCGAATAAACTTTAGGGAAACCCTAATTCGTTGATTTTGTGTCACTCATGTTGTGGAGGCGGTCTAAAGAGCTTTATGGAAATGTTTCTCTGTAAGTATCCGTCTCTCTGTAAGAATCTCAGTTTGATGTTATAAGAATTGATTTTGATTTCTATGTTGTTCATTTCGTACAACTGTTGGGTGATGTGTATCCATATTTGTGTCATCTTCGTTTGGTTTTTGTTAGCTTGGAAAGCTGGGAGTTTAGCTGATTTATACCCCAATTTAATGAACTAATATGCCATTTTTAAGACTTTTTCTAACTTATTTGGTTGACCAAGAAAAATAAATTATTTCCTTTTTTATGGGTGTTTGGGTAAGATTTCAAGCAACTCTCAAAAACATATTCTATCTCTTATAATATCTTTGTAGGATCATTTCTAAAATAATTCATCTATAACACATAATTTCCTATCACCAATAGAATCAATCAGTGGTAGGCTGATAGAATCACTCATTGATTTCTATCAATGATAAAGCACAATTATGGATTTCTTACTAAAAATGAATTAGTTTTGATTTTGTGCTATAGCTGGAAATATTTTACCATTTTTTATTATACATGCAAAATCTCCATGCATCTACTTGAATTTACTACATTTGATAACTTGTAAAAAATTAATTCGTAAGTAGTTGGTAATTATGGATTAAACATAATCCATTTTAATACTTTATGATTAAGGCTCTTATTTGATCACTAGGCCAACCCAATGATACTAGGTGTAAAATGATTGTAAGACATTTTTTTCTGAAATCCATTACTGAAGAGTCTGTTTTAAGGGAACCTAGGATCTACAACTTTTTCTATTGATTTTTGTAAGGAAAAGGAAAAAAACAGCTAAGAACAAATTTTTTTTAATATCAATTTCTCGTGAAGAGTAACCGATAGTGGTGCACATGGTCCGAGTTGGGGGAATCTTTTTTATTAACCCAAAACTTCAATTGGCCAATCTGTCAACTCGTCCAATCCTATGTATTGGTATTATAACAACTCAACCCATATATTTTTGGGTTGGTTGGATTGAGTTTTTGGGCTGTGTTCATGTTCTTTTTTCTCTTTAAGGCTCAAATCATAGCCCGTAAATAGGTAAGAATTAGAAAAAATGTGTGATTCTTGCTTAAACCTAGGTTACCTATCTTACCAATGTTTTAAAAACTTGTCTTATTAATCAATCATATATATAATATTATTTTTAGTTTAGGTTGGCTTGGATTTGATCAAGAACACAATCCAACAAAAATTATAAAATCATAATCCAACCTAACCAAAAGATAATTATAACACAATCCTTATGATTTGGATTGGGTAGTCTGGGTTGCTCAGTTTGTCGGTCTTTTTGTACATCCCTAATAAACGGTTCTGCTCCTGGTTCCACAAAGAATGAATTGCTGCTGGTTCTTGTGGACCAAGAGCTCCATTAACATTTCTCCTAGCACTAGCAGAGATAGTGAGCGGTGACAAAATTTTGTAACTGGTCAAATTTTTCTAACTACTTTTATTTTCATTGTTTCTTCAGACGATCTTCTGAACTGATTTATTTGTAATTATTTTCCTTGGATAGTCTGCAGACTCTATCTTGGTTTTTTTATAGTCAAGAATATGGTGTTGTGCTAGACTTTTCGTTGCTCTTGGATCAAGATCACCTACGGTGTCAATGAAATGAGTGTTGTGTTAAATTTTGTCGATTCTTGAATTTTAGTTTTAAGTGTTAGTGTCACTGCACCTTTATAAACACCGAGTGTCAATGAATGAATATTTCAGTGAAAAGTCGAGTAACGAAGAAAGTGATCATGCAAGATGCCCTATGAAGAGGTAGATTTTGGTTCCTTCTCAATACTAAATTTTAGTAGAAAGCTCTTATGAAATAATCTCATTGTCTAAAGCCTATAAAATTAGTGAATGACAGTTAGTTTTAGAATCAACTCCAATCAAGGCTTGATGGAAATTGAAATCCTAATTTCATACGATTGATACTTTCTGAAGATATATGTATTTTCCTCTCAGGTAAAAATGTTAGTCTTATTGTCTTTGGTGTATCTATTAAGTGAATTGTAGAGTCGACTTTATATTCACCAGGATAATTGCTATATCTTGTCATCCGTACCTTTCCTGAATAATGAGTCGAAGTTATTGTTTGCTTGGTGGTCTCAAGGGGTGGCATTGTGGTCGAAGGGTTGGACTTTGAAGGTGTGCTTCTCTCAAAGTCCTAGATTCAAAACTCACCTGTGACATTAATTTATAGGTACCTTTCGTGTTTCCATTCCTTCAATGTCTCTCAGTCCATGGTTACTCTCGGTACAGTGGAGTGAAACTCCAATTTCCCGATTGCAAAAATCGTTTGTTGGGTGAAAACTGTTGGTAGGGCTTTGGCCAAAGAGCTTATAGAGAGAATAAGTTCGAGTCAGGTTGGCTAGTTACATAAATTTTAATATCCTACAAGTAACTGTAGCAATCAAATAAAGTAGGGTTAAAGAGTTGTCTCATAGATATAGACGAGGTATATACAAGCTCGTACCAATCCTCGTTGATTATTTTTTTATATGTAAATGTATGTACTATATTGAATCAGGACCATGTGGAGCAAGGCAAATACACAGACCTAACGTCAACCATACGGTGCTCATCTTGGTATTCATGATCTCCATTTTGTGGTTTTCTTTTCGCTTTTGCACCTTATGAATAAAGACAATTGTCAGGTTCTGGTTTGGCTTGTTCTTGAACATACATTATGCTCAAGTATCTTTGTAGTGATTAGATTGTAAATTTTCTTCTTTGTTCGTGAATAAAGATAATCCATTTGCCAAATGATTAAACATGTATTTGTAGTGATTAGATTGTAAATCTTCCCCGTTGTTGTTATTTAATAATCAAACTGATGTCCAACAATGCATTTCATGACATAATCACCA

mRNA sequence

ATTGAATATTCCCCGAGTAAATATTCACCATTCCTCCAAATATTCTCGGCGCCACTCCGACGGCAAATTGGACCGAGAAAACCCTCGATCAAGCTAGGGTTTATCTTCTCCACTCTTCAATCTCTCAACCTATCTTTCACCGGCGAAAATGGCGAACAAGCAACGGCCATCATCAGGGCCCTGGATCCTCGAATCAATACCCTTGATTGTTGTCATTCTCATTGCAGCTCACGTCTTCGCTATGGTGTACTGGATTTATAGGTTAGCATCCCAAAAACAGCCTCCCAGGGCGAAGGCACACTGAGTTACTCTGTGATTCCTTCCTCGAATAAACTTTAGGGAAACCCTAATTCGTTGATTTTGTGTCACTCATGTTGTGGAGGCGGTCTAAAGAGCTTTATGGAAATGTTTCTCTTGAAAAGTCGAGTAACGAAGAAAGTGATCATGCAAGATGCCCTATGAAGAGGACCATGTGGAGCAAGGCAAATACACAGACCTAACGTCAACCATACGGTGCTCATCTTGGTATTCATGATCTCCATTTTGTGGTTTTCTTTTCGCTTTTGCACCTTATGAATAAAGACAATTGTCAGGTTCTGGTTTGGCTTGTTCTTGAACATACATTATGCTCAAGTATCTTTGTAGTGATTAGATTGTAAATTTTCTTCTTTGTTCGTGAATAAAGATAATCCATTTGCCAAATGATTAAACATGTATTTGTAGTGATTAGATTGTAAATCTTCCCCGTTGTTGTTATTTAATAATCAAACTGATGTCCAACAATGCATTTCATGACATAATCACCA

Coding sequence (CDS)

ATGGCGAACAAGCAACGGCCATCATCAGGGCCCTGGATCCTCGAATCAATACCCTTGATTGTTGTCATTCTCATTGCAGCTCACGTCTTCGCTATGGTGTACTGGATTTATAGGTTAGCATCCCAAAAACAGCCTCCCAGGGCGAAGGCACACTGA

Protein sequence

MANKQRPSSGPWILESIPLIVVILIAAHVFAMVYWIYRLASQKQPPRAKAH

Homology

[Close]

BLAST of Sed0025799 vs. NCBI nr
Match: KAG7020426.1 (hypothetical protein SDJN02_17110 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 1  MANKQRPSSGPWILESIPLIVVILIAAHVFAMVYWIYRLASQKQPPRAKAH 52
          MAN+QR S GPW LE+IPL++V+LIAAHVFA+VYWIYRLA+QKQPPR K H
Sbjct: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 51

[Close]

BLAST of Sed0025799 vs. NCBI nr
Match: KAG7029467.1 (hypothetical protein SDJN02_07806 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-14
Identity = 39/51 (76.47%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MANKQRPSSGPWILESIPLIVVILIAAHVFAMVYWIYRLASQKQPPRAKAH 52
          MAN++R S+GPWILE++P IVV+LIAAHVFA+VYWIY+LA+QKQPPR KAH
Sbjct: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 51

[Close]

BLAST of Sed0025799 vs. NCBI nr
Match: KAG5589053.1 (hypothetical protein H5410_039567 [Solanum commersonii])

HSP 1 Score: 80.9 bits (198), Expect = 3.6e-12
Identity = 36/51 (70.59%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 1  MANKQRPSSGPWILESIPLIVVILIAAHVFAMVYWIYRLASQKQPPRAKAH 52
          MAN+Q+ SS PWILE++PL+VVILIAAHV A+VYWIYR+A++KQP R+K H
Sbjct: 1  MANQQQESSRPWILEALPLLVVILIAAHVLALVYWIYRVATEKQPQRSKKH 51

[Close]

BLAST of Sed0025799 vs. NCBI nr
Match: PHU08794.1 (hypothetical protein BC332_20654 [Capsicum chinense])

HSP 1 Score: 79.7 bits (195), Expect = 8.0e-12
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MANKQRPSSGPWILESIPLIVVILIAAHVFAMVYWIYRLASQKQPPRAKAH 52
          M N+Q  SS PWILE++PL+VVILIAAHV A+VYWIYRLA++KQP R+K H
Sbjct: 1  MPNQQHDSSRPWILEALPLLVVILIAAHVLALVYWIYRLATEKQPQRSKKH 51

[Close]

BLAST of Sed0025799 vs. NCBI nr
Match: PON94578.1 (Transmembrane protein [Trema orientale])

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11
Identity = 34/51 (66.67%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MANKQRPSSGPWILESIPLIVVILIAAHVFAMVYWIYRLASQKQPPRAKAH 52
          MAN+Q   + PW+L+++PL+VV+LIAAHVFA+VYWIYRLA++KQP R KAH
Sbjct: 1  MANEQLSPARPWLLDAVPLMVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of Sed0025799 vs. ExPASy TrEMBL
Match: A0A3Q7HHC8 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 36/51 (70.59%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 1  MANKQRPSSGPWILESIPLIVVILIAAHVFAMVYWIYRLASQKQPPRAKAH 52
          MAN+Q+ SS PWILE++PL+VVILIAAHV A+VYWIYR+A++KQP R+K H
Sbjct: 1  MANQQQESSRPWILEALPLLVVILIAAHVLALVYWIYRVATEKQPQRSKKH 51

[Close]

BLAST of Sed0025799 vs. ExPASy TrEMBL
Match: M1CHM3 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 36/51 (70.59%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 1  MANKQRPSSGPWILESIPLIVVILIAAHVFAMVYWIYRLASQKQPPRAKAH 52
          MAN+Q+ SS PWILE++PL+VVILIAAHV A+VYWIYR+A++KQP R+K H
Sbjct: 1  MANQQQGSSRPWILEALPLLVVILIAAHVLALVYWIYRVATEKQPQRSKKH 51

[Close]

BLAST of Sed0025799 vs. ExPASy TrEMBL
Match: A0A2G3BQQ1 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_20654 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.8e-12
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MANKQRPSSGPWILESIPLIVVILIAAHVFAMVYWIYRLASQKQPPRAKAH 52
          M N+Q  SS PWILE++PL+VVILIAAHV A+VYWIYRLA++KQP R+K H
Sbjct: 1  MPNQQHDSSRPWILEALPLLVVILIAAHVLALVYWIYRLATEKQPQRSKKH 51

[Close]

BLAST of Sed0025799 vs. ExPASy TrEMBL
Match: A0A2P5F9W8 (Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_096130 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.6e-12
Identity = 34/51 (66.67%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MANKQRPSSGPWILESIPLIVVILIAAHVFAMVYWIYRLASQKQPPRAKAH 52
          MAN+Q   + PW+L+++PL+VV+LIAAHVFA+VYWIYRLA++KQP R KAH
Sbjct: 1  MANEQLSPARPWLLDAVPLMVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of Sed0025799 vs. ExPASy TrEMBL
Match: A0A2I4FPQ3 (uncharacterized protein LOC109000993 OS=Juglans regia OX=51240 GN=LOC109000993 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-11
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MANKQRPSSG-PWILESIPLIVVILIAAHVFAMVYWIYRLASQKQPPRAKAH 52
          MAN+   SS  PW+LE++PL+VV+LIAAHV A+VYWIYRLAS+KQP R KAH
Sbjct: 1  MANQHHSSSSRPWLLEAVPLMVVVLIAAHVLALVYWIYRLASEKQPQRRKAH 52

[Close]

BLAST of Sed0025799 vs. TAIR 10
Match: AT5G10745.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 1.8e-06
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 11 PWILESIPLIVVILIAAHVFAMVYWIYRLASQK--QPPRAKAH 52
          PW L+ +P +VV+L AAHV A+ YWIYRLA+ +  Q  R K H
Sbjct: 9  PWFLDLVPALVVLLAAAHVIALGYWIYRLATDRRAQSQRGKFH 51

[Close]

BLAST of Sed0025799 vs. TAIR 10
Match: AT5G24980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10745.1); Has 32 Blast hits to 32 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 2.6e-05
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 14 LESIPLIVVILIAAHVFAMVYWIYRLASQKQPPRAK 50
          ++ +P +VV L A HV A+VYWIYRLAS + P R K
Sbjct: 5  VDLVPAMVVFLAAVHVIALVYWIYRLASDRPPQRKK 40

The following BLAST results are available for this feature:

BLAST of Sed0025799 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020426.1	1.0e-14	76.47	hypothetical protein SDJN02_17110 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7029467.1	1.7e-14	76.47	hypothetical protein SDJN02_07806 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG5589053.1	3.6e-12	70.59	hypothetical protein H5410_039567 [Solanum commersonii]	[more]
PHU08794.1	8.0e-12	70.59	hypothetical protein BC332_20654 [Capsicum chinense]	[more]
PON94578.1	1.8e-11	66.67	Transmembrane protein [Trema orientale]	[more]

BLAST of Sed0025799 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025799 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3Q7HHC8	1.7e-12	70.59	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]
M1CHM3	2.3e-12	70.59	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]
A0A2G3BQQ1	3.8e-12	70.59	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_20654 PE=4 SV=1	[more]
A0A2P5F9W8	8.6e-12	66.67	Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_096130 PE=4 SV=1	[more]
A0A2I4FPQ3	2.5e-11	69.23	uncharacterized protein LOC109000993 OS=Juglans regia OX=51240 GN=LOC109000993 P...	[more]

BLAST of Sed0025799 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10745.1	1.8e-06	53.49	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G24980.1	2.6e-05	55.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 47..51
None	No IPR available	PANTHER	PTHR35755	PROTEIN, PUTATIVE-RELATED	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025799.1	Sed0025799.1	mRNA
Sed0025799.2	Sed0025799.2	mRNA
Sed0025799.3	Sed0025799.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane