Sed0025763 (gene) Chayote v1

Overview


Name	Sed0025763
Type	gene
Organism	Sechium edule (Chayote v1)
Description	E3 ubiquitin-protein ligase RNF181-like
Location	LG14: 2046518 .. 2047012 (+)
RNA-Seq Expression	Sed0025763
Synteny	Sed0025763

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTTTTGGAAATCCAACTACGGAATCCATCTGAGAACAATGTTGTGTACTTCTATATTCCTTCCACTGTATCCAATGATCACGTGCACTTCCGAACCTACCTCGTGCAGCTTCTGTCGACGCTCAACATCCCCACCGCCTCATCCGAAGCCATGGCTCCCAGGCTCGCGTCCTATATCTTCCAATTCATGGAGGAAAACGGAAGTGCGAACTTACATTTGACCGCGATGATCGTAAACATGGAGGACACCTTGAGGACCGAGTCGAACGAACCGCAATTGAGGTTTAGAATGGAGAAATTGGAACAGAATGTGGAAGATTTGGGAGATTGTACCATCTGTTTGGATGAAATCAATGGTAAAAATAATGAGGTGGTAAAGATCTCTTGTGGACATGTATATCATAAGTCATGCCTTCTTAAGTGGCTTAACAATTGTAATTCTTGCCCTTTGTGTAGAGCTCCACTACCCCTTGAGGAGGGTTCACATTGA

mRNA sequence

ATGCTTGTTTTGGAAATCCAACTACGGAATCCATCTGAGAACAATGTTGTGTACTTCTATATTCCTTCCACTGTATCCAATGATCACGTGCACTTCCGAACCTACCTCGTGCAGCTTCTGTCGACGCTCAACATCCCCACCGCCTCATCCGAAGCCATGGCTCCCAGGCTCGCGTCCTATATCTTCCAATTCATGGAGGAAAACGGAAGTGCGAACTTACATTTGACCGCGATGATCGTAAACATGGAGGACACCTTGAGGACCGAGTCGAACGAACCGCAATTGAGGTTTAGAATGGAGAAATTGGAACAGAATGTGGAAGATTTGGGAGATTGTACCATCTGTTTGGATGAAATCAATGGTAAAAATAATGAGGTGGTAAAGATCTCTTGTGGACATGTATATCATAAGTCATGCCTTCTTAAGTGGCTTAACAATTGTAATTCTTGCCCTTTGTGTAGAGCTCCACTACCCCTTGAGGAGGGTTCACATTGA

Coding sequence (CDS)

ATGCTTGTTTTGGAAATCCAACTACGGAATCCATCTGAGAACAATGTTGTGTACTTCTATATTCCTTCCACTGTATCCAATGATCACGTGCACTTCCGAACCTACCTCGTGCAGCTTCTGTCGACGCTCAACATCCCCACCGCCTCATCCGAAGCCATGGCTCCCAGGCTCGCGTCCTATATCTTCCAATTCATGGAGGAAAACGGAAGTGCGAACTTACATTTGACCGCGATGATCGTAAACATGGAGGACACCTTGAGGACCGAGTCGAACGAACCGCAATTGAGGTTTAGAATGGAGAAATTGGAACAGAATGTGGAAGATTTGGGAGATTGTACCATCTGTTTGGATGAAATCAATGGTAAAAATAATGAGGTGGTAAAGATCTCTTGTGGACATGTATATCATAAGTCATGCCTTCTTAAGTGGCTTAACAATTGTAATTCTTGCCCTTTGTGTAGAGCTCCACTACCCCTTGAGGAGGGTTCACATTGA

Protein sequence

MLVLEIQLRNPSENNVVYFYIPSTVSNDHVHFRTYLVQLLSTLNIPTASSEAMAPRLASYIFQFMEENGSANLHLTAMIVNMEDTLRTESNEPQLRFRMEKLEQNVEDLGDCTICLDEINGKNNEVVKISCGHVYHKSCLLKWLNNCNSCPLCRAPLPLEEGSH

Homology

[Close]

BLAST of Sed0025763 vs. NCBI nr
Match: XP_016899530.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa] >TYK29842.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-26
Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = 0


Query: 35  YLVQLLSTLNIPTASSEAMAPRLASYIFQFMEENGSANLHLTA----------------M 94
           Y+ Q LS+LNI  A+S++MA ++AS+I Q  + NG  N H+ A                M
Sbjct: 74  YITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDFIRVIWLELEEQSM 133

Query: 95  IVNMEDTLRTESNEPQL-----RFRMEKL--EQNVEDLGDCTICLDEINGKNNEVVKISC 154
               E+T+  +   P L     + R E+L  E+ VEDLGDC+ICLDE++ +  EV++I C
Sbjct: 134 GAGAEETVVFDEAPPALKRGVGKARGERLKSEEKVEDLGDCSICLDELSCEKREVIRIPC 193

Query: 155 GHVYHKSCLLKWLNNCNSCPLCRAPLPLEE 162
           GHVYH+SC+ KWL N NSCPLCR PLPL+E
Sbjct: 194 GHVYHESCIFKWLKNHNSCPLCRKPLPLKE 223

[Close]

BLAST of Sed0025763 vs. NCBI nr
Match: XP_004144954.1 (uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hypothetical protein Csa_020356 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-22
Identity = 61/145 (42.07%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 35  YLVQLLSTLNIPTASSEAMAPRLASYIFQFMEENGSANLHLTAMI--------------- 94
           Y+ Q+LS+LNI  A+S+ MA R+AS+I Q  + N   N H+ A +               
Sbjct: 74  YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIWLPSMGGGG 133

Query: 95  VNMEDTLRTESNEPQLR-----FRMEKL--EQNVEDLGDCTICLDEINGKNNEVVKISCG 154
              E+T+  +   P ++      R E+L  E+ +E+LGDC+ICLDE++ +  EV++I CG
Sbjct: 134 AGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELGDCSICLDELSCEKREVMRIPCG 193

Query: 155 HVYHKSCLLKWLNNCNSCPLCRAPL 158
           HVYH+SC+ KWL N NSCPLCR PL
Sbjct: 194 HVYHESCIFKWLENHNSCPLCRKPL 218

[Close]

BLAST of Sed0025763 vs. NCBI nr
Match: XP_011659694.1 (E3 ubiquitin-protein ligase RDUF1 [Cucumis sativus] >KGN43356.1 hypothetical protein Csa_020163 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-22
Identity = 61/145 (42.07%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 35  YLVQLLSTLNIPTASSEAMAPRLASYIFQFMEENGSANLHLTAMI--------------- 94
           Y+ Q+LS+LNI  A+S+ MA R+AS+I Q  + N   N H+ A +               
Sbjct: 74  YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIWLPSMGGGG 133

Query: 95  VNMEDTLRTESNEPQLR-----FRMEKL--EQNVEDLGDCTICLDEINGKNNEVVKISCG 154
              E+T+  +   P ++      R E+L  E+ +E+LGDC+ICLDE++ +  EV++I CG
Sbjct: 134 AGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELGDCSICLDELSCEKREVMRIPCG 193

Query: 155 HVYHKSCLLKWLNNCNSCPLCRAPL 158
           HVYH+SC+ KWL N NSCPLCR PL
Sbjct: 194 HVYHESCIFKWLENHNSCPLCRKPL 218

[Close]

BLAST of Sed0025763 vs. NCBI nr
Match: XP_022985641.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima])

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-22
Identity = 61/169 (36.09%), Postives = 96/169 (56.80%), Query Frame = 0


Query: 19  FYIPSTVSN-DHVHFRTYLVQLLSTLNIPTASSEAMAPRLASYIFQFMEENGSANLHLTA 78
           F +P    N D V  + Y+ ++L +LNI   +SE +A ++AS+  Q  EE+   N+H+ A
Sbjct: 58  FPLPPNARNIDPVFLQIYIAEILLSLNIGAVASEVIAAQIASFTLQLAEEHNDTNVHVVA 117

Query: 79  MIVNMEDT----------------------LRTESNEPQLRFRMEKLEQNVE---DLGDC 138
           ++ N+ ++                      +  E      R+RMEK+E+  E   DLG+C
Sbjct: 118 VVDNVVESRFWRLQAVPVMQGGRAAEERREVVEEVAAANGRYRMEKVEEKEEEEVDLGNC 177

Query: 139 TICLDEINGKNNEVVKISCGHVYHKSCLLKWLNNCNSCPLCRAPLPLEE 162
           +ICLDE+  + +EV++  CGHVYH+SC+ +WL+N +SCPLCR   PL E
Sbjct: 178 SICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFPLME 226

[Close]

BLAST of Sed0025763 vs. NCBI nr
Match: XP_022944063.1 (RING-H2 finger protein ATL16-like [Cucurbita moschata])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-21
Identity = 60/169 (35.50%), Postives = 95/169 (56.21%), Query Frame = 0


Query: 19  FYIPSTVSN-DHVHFRTYLVQLLSTLNIPTASSEAMAPRLASYIFQFMEENGSANLHLTA 78
           F +P    N D V  + Y+  +L +LNI   +SE ++ ++AS+  Q  EE+   N+H+ A
Sbjct: 57  FPLPPNARNIDPVFLQIYIADILLSLNIGAVASEVISAQIASFTLQLAEEHNDTNVHVVA 116

Query: 79  MIVNMEDT----------------------LRTESNEPQLRFRMEKL---EQNVEDLGDC 138
           ++ N+ ++                      +  E      R+RMEK+   E+  EDLG+C
Sbjct: 117 VVDNVMESRFWRLQAVPVVQGGSAAVERREVVEEVAAANGRYRMEKVEAEEEEEEDLGNC 176

Query: 139 TICLDEINGKNNEVVKISCGHVYHKSCLLKWLNNCNSCPLCRAPLPLEE 162
           +ICLDE+  + +EV++  CGHVYH+SC+ +WL+N +SCPLCR   PL E
Sbjct: 177 SICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFPLME 225

[Close]

BLAST of Sed0025763 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-09
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 67  ENGSANLHLTAMIVNMEDTLRTESNE-PQLRF----RMEKLEQNVEDLGDCTICLDEING 126
           EN S +      +   E  L    N  P LRF    R +K   N     +C++CL +  G
Sbjct: 58  ENSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADN-----ECSVCLSKFQG 117

Query: 127 KNNEVVKISCGHVYHKSCLLKWLNNCN-SCPLCRAPLPLEEGSH 165
            ++E+ K+ CGH++HK+CL KW++  N +CPLCR PL +    H
Sbjct: 118 -DSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDH 155

[Close]

BLAST of Sed0025763 vs. ExPASy Swiss-Prot
Match: Q08109 (ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HRD1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-08
Identity = 29/91 (31.87%), Postives = 48/91 (52.75%), Query Frame = 0


Query: 82  MEDTLRTESNEPQLRFRMEKLEQNVEDLGDCTICLDEI---------NGKNNEVVKISCG 141
           ++DTL T +        +E+L+ +  D   C IC+DE+           KN +  ++ CG
Sbjct: 327 LDDTLVTVT--------VEQLQNSANDDNICIICMDELIHSPNQQTWKNKNKKPKRLPCG 386

Query: 142 HVYHKSCLLKWLNNCNSCPLCRAPLPLEEGS 164
           H+ H SCL  W+    +CP+CR P+  E+G+
Sbjct: 387 HILHLSCLKNWMERSQTCPICRLPVFDEKGN 409

[Close]

BLAST of Sed0025763 vs. ExPASy Swiss-Prot
Match: Q9CY62 (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-08
Identity = 22/53 (41.51%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 112 CTICLDEINGKNNEVVKISCGHVYHKSCLLKWLNNCNSCPLCRAPLPLEEGSH 165
           C +CL E   +   V+++ C H++H +C+L WL+  NSCPLCR  LP ++ S+
Sbjct: 88  CPVCLLEFEAEET-VIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSY 139

[Close]

BLAST of Sed0025763 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.1e-08
Identity = 22/54 (40.74%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 108 DLGDCTICLDEINGKNNEVVKISCGHVYHKSCLLKWLNNCNSCPLCRAPLPLEE 162
           +   C +C+D+   +  E  ++ C H+YHK CLL WL   NSCP+CR  LP ++
Sbjct: 220 EFNQCAVCMDDFE-EGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDD 272

[Close]

BLAST of Sed0025763 vs. ExPASy Swiss-Prot
Match: Q6AXU4 (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.1e-08
Identity = 22/53 (41.51%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 112 CTICLDEINGKNNEVVKISCGHVYHKSCLLKWLNNCNSCPLCRAPLPLEEGSH 165
           C +CL E   +   V+++ C H++H +C+L WL+  NSCPLCR  LP ++ S+
Sbjct: 88  CPVCLLEFE-EEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSY 139

[Close]

BLAST of Sed0025763 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.0e-26
Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = 0


Query: 35  YLVQLLSTLNIPTASSEAMAPRLASYIFQFMEENGSANLHLTA----------------M 94
           Y+ Q LS+LNI  A+S++MA ++AS+I Q  + NG  N H+ A                M
Sbjct: 74  YITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDFIRVIWLELEEQSM 133

Query: 95  IVNMEDTLRTESNEPQL-----RFRMEKL--EQNVEDLGDCTICLDEINGKNNEVVKISC 154
               E+T+  +   P L     + R E+L  E+ VEDLGDC+ICLDE++ +  EV++I C
Sbjct: 134 GAGAEETVVFDEAPPALKRGVGKARGERLKSEEKVEDLGDCSICLDELSCEKREVIRIPC 193

Query: 155 GHVYHKSCLLKWLNNCNSCPLCRAPLPLEE 162
           GHVYH+SC+ KWL N NSCPLCR PLPL+E
Sbjct: 194 GHVYHESCIFKWLKNHNSCPLCRKPLPLKE 223

[Close]

BLAST of Sed0025763 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.0e-26
Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = 0


Query: 35  YLVQLLSTLNIPTASSEAMAPRLASYIFQFMEENGSANLHLTA----------------M 94
           Y+ Q LS+LNI  A+S++MA ++AS+I Q  + NG  N H+ A                M
Sbjct: 74  YITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDFIRVIWLELEEQSM 133

Query: 95  IVNMEDTLRTESNEPQL-----RFRMEKL--EQNVEDLGDCTICLDEINGKNNEVVKISC 154
               E+T+  +   P L     + R E+L  E+ VEDLGDC+ICLDE++ +  EV++I C
Sbjct: 134 GAGAEETVVFDEAPPALKRGVGKARGERLKSEEKVEDLGDCSICLDELSCEKREVIRIPC 193

Query: 155 GHVYHKSCLLKWLNNCNSCPLCRAPLPLEE 162
           GHVYH+SC+ KWL N NSCPLCR PLPL+E
Sbjct: 194 GHVYHESCIFKWLKNHNSCPLCRKPLPLKE 223

[Close]

BLAST of Sed0025763 vs. ExPASy TrEMBL
Match: A0A0A0K696 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 9.1e-23
Identity = 61/145 (42.07%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 35  YLVQLLSTLNIPTASSEAMAPRLASYIFQFMEENGSANLHLTAMI--------------- 94
           Y+ Q+LS+LNI  A+S+ MA R+AS+I Q  + N   N H+ A +               
Sbjct: 74  YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIWLPSMGGGG 133

Query: 95  VNMEDTLRTESNEPQLR-----FRMEKL--EQNVEDLGDCTICLDEINGKNNEVVKISCG 154
              E+T+  +   P ++      R E+L  E+ +E+LGDC+ICLDE++ +  EV++I CG
Sbjct: 134 AGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELGDCSICLDELSCEKREVMRIPCG 193

Query: 155 HVYHKSCLLKWLNNCNSCPLCRAPL 158
           HVYH+SC+ KWL N NSCPLCR PL
Sbjct: 194 HVYHESCIFKWLENHNSCPLCRKPL 218

[Close]

BLAST of Sed0025763 vs. ExPASy TrEMBL
Match: A0A0A0K2W2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 9.1e-23
Identity = 61/145 (42.07%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 35  YLVQLLSTLNIPTASSEAMAPRLASYIFQFMEENGSANLHLTAMI--------------- 94
           Y+ Q+LS+LNI  A+S+ MA R+AS+I Q  + N   N H+ A +               
Sbjct: 74  YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIWLPSMGGGG 133

Query: 95  VNMEDTLRTESNEPQLR-----FRMEKL--EQNVEDLGDCTICLDEINGKNNEVVKISCG 154
              E+T+  +   P ++      R E+L  E+ +E+LGDC+ICLDE++ +  EV++I CG
Sbjct: 134 AGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELGDCSICLDELSCEKREVMRIPCG 193

Query: 155 HVYHKSCLLKWLNNCNSCPLCRAPL 158
           HVYH+SC+ KWL N NSCPLCR PL
Sbjct: 194 HVYHESCIFKWLENHNSCPLCRKPL 218

[Close]

BLAST of Sed0025763 vs. ExPASy TrEMBL
Match: A0A6J1J8T7 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111483640 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-22
Identity = 61/169 (36.09%), Postives = 96/169 (56.80%), Query Frame = 0


Query: 19  FYIPSTVSN-DHVHFRTYLVQLLSTLNIPTASSEAMAPRLASYIFQFMEENGSANLHLTA 78
           F +P    N D V  + Y+ ++L +LNI   +SE +A ++AS+  Q  EE+   N+H+ A
Sbjct: 58  FPLPPNARNIDPVFLQIYIAEILLSLNIGAVASEVIAAQIASFTLQLAEEHNDTNVHVVA 117

Query: 79  MIVNMEDT----------------------LRTESNEPQLRFRMEKLEQNVE---DLGDC 138
           ++ N+ ++                      +  E      R+RMEK+E+  E   DLG+C
Sbjct: 118 VVDNVVESRFWRLQAVPVMQGGRAAEERREVVEEVAAANGRYRMEKVEEKEEEEVDLGNC 177

Query: 139 TICLDEINGKNNEVVKISCGHVYHKSCLLKWLNNCNSCPLCRAPLPLEE 162
           +ICLDE+  + +EV++  CGHVYH+SC+ +WL+N +SCPLCR   PL E
Sbjct: 178 SICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFPLME 226

[Close]

BLAST of Sed0025763 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-10
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 67  ENGSANLHLTAMIVNMEDTLRTESNE-PQLRF----RMEKLEQNVEDLGDCTICLDEING 126
           EN S +      +   E  L    N  P LRF    R +K   N     +C++CL +  G
Sbjct: 58  ENSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADN-----ECSVCLSKFQG 117

Query: 127 KNNEVVKISCGHVYHKSCLLKWLNNCN-SCPLCRAPLPLEEGSH 165
            ++E+ K+ CGH++HK+CL KW++  N +CPLCR PL +    H
Sbjct: 118 -DSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDH 155

[Close]

BLAST of Sed0025763 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-10
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 67  ENGSANLHLTAMIVNMEDTLRTESNE-PQLRF----RMEKLEQNVEDLGDCTICLDEING 126
           EN S +      +   E  L    N  P LRF    R +K   N     +C++CL +  G
Sbjct: 58  ENSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADN-----ECSVCLSKFQG 117

Query: 127 KNNEVVKISCGHVYHKSCLLKWLNNCN-SCPLCRAPLPLEEGSH 165
            ++E+ K+ CGH++HK+CL KW++  N +CPLCR PL +    H
Sbjct: 118 -DSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDH 155

[Close]

BLAST of Sed0025763 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 37/141 (26.24%), Postives = 66/141 (46.81%), Query Frame = 0


Query: 26  SNDHVHFRTYLVQLLSTLNIPTASSEAMAPRLASYIFQFMEENGSANLHLTAMIVNMEDT 85
           S+ H H RT L   L      +   + +AP++++        +    L + A +     T
Sbjct: 66  SSSHDHIRTLLHDRLVGYPFESYLCDDLAPKISTAAIDLGFGHNGFTLTMAATVTYR--T 125

Query: 86  LRTESNEPQL-------RFRMEKLEQNVEDLGDCTICLDEI--NGKNNEVVKISCGHVYH 145
           +   SN+ +        R + E+ +    +   C+ICL+ +    K  +V +++C HV+H
Sbjct: 126 VSVMSNDEKSLRMVLLGRMKAEEFKSLKMETEPCSICLESLVSGPKPRDVTRMTCSHVFH 185

Query: 146 KSCLLKWLNNCNSCPLCRAPL 158
             CLL+WL   N+CPLCR  +
Sbjct: 186 NGCLLEWLKRKNTCPLCRTEI 204

[Close]

BLAST of Sed0025763 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-09
Identity = 22/52 (42.31%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 108 DLGDCTICLDEINGKNNEVVKISCGHVYHKSCLLKWLNNCNSCPLCRAPLPL 160
           D+  CT+C++E      +  ++ C H+YHK C++ WL   NSCP+CR  LPL
Sbjct: 220 DMSQCTVCMEEFI-VGGDATELPCKHIYHKDCIVPWLRLNNSCPICRRDLPL 270

[Close]

BLAST of Sed0025763 vs. TAIR 10
Match: AT4G12190.1 (RING/U-box superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09
Identity = 24/64 (37.50%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 96  RFRMEKLEQNVEDLGDCTICLDEI--NGKNNEVVKISCGHVYHKSCLLKWLNNCNSCPLC 155
           R + E+L+    +   C+ICL+ +    K  ++ +++C HV+H  CLL+WL   N+CPLC
Sbjct: 6   RIKTEELKSLKMETEPCSICLESLVSGPKPRDITRMTCSHVFHNGCLLEWLKRKNTCPLC 65

Query: 156 RAPL 158
           R  L
Sbjct: 66  RTEL 69

The following BLAST results are available for this feature:

BLAST of Sed0025763 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899530.1	6.3e-26	45.33	PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 ...	[more]
XP_004144954.1	1.9e-22	42.07	uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hypothetical ...	[more]
XP_011659694.1	1.9e-22	42.07	E3 ubiquitin-protein ligase RDUF1 [Cucumis sativus] >KGN43356.1 hypothetical pro...	[more]
XP_022985641.1	3.2e-22	36.09	RING-H2 finger protein ATL16-like [Cucurbita maxima]	[more]
XP_022944063.1	1.2e-21	35.50	RING-H2 finger protein ATL16-like [Cucurbita moschata]	[more]

BLAST of Sed0025763 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI09	3.2e-09	35.58	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q08109	2.7e-08	31.87	ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces cerevisiae (st...	[more]
Q9CY62	4.7e-08	41.51	E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1	[more]
P0CH30	6.1e-08	40.74	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q6AXU4	6.1e-08	41.51	E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 ...	[more]

BLAST of Sed0025763 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1S5	3.0e-26	45.33	E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S4DUZ4	3.0e-26	45.33	E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 ...	[more]
A0A0A0K696	9.1e-23	42.07	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 P...	[more]
A0A0A0K2W2	9.1e-23	42.07	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 P...	[more]
A0A6J1J8T7	1.6e-22	36.09	RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111483640 PE...	[more]

BLAST of Sed0025763 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04240.1	2.3e-10	35.58	RING/U-box superfamily protein	[more]
AT2G04240.2	2.3e-10	35.58	RING/U-box superfamily protein	[more]
AT4G05350.1	1.1e-09	26.24	RING/U-box superfamily protein	[more]
AT1G60360.1	2.0e-09	42.31	RING/U-box superfamily protein	[more]
AT4G12190.1	3.3e-09	37.50	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 112..153 e-value: 1.1E-6 score: 38.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 111..154 e-value: 2.0E-13 score: 50.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 112..154 score: 13.182669
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 85..163 e-value: 2.2E-18 score: 67.4
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 30..155
None	No IPR available	PANTHER	PTHR22765:SF329	SUBFAMILY NOT NAMED	coord: 30..155
None	No IPR available	CDD	cd16448	RING-H2	coord: 112..154 e-value: 3.78753E-13 score: 58.6175
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 111..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025763.1	Sed0025763.1	mRNA