Sed0025749 (gene) Chayote v1

Overview


Name	Sed0025749
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Gag/pol protein
Location	LG06: 15594647 .. 15595375 (+)
RNA-Seq Expression	Sed0025749
Synteny	Sed0025749

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACTGCTTTAGAGATGATGATAGCCAGTCATGAGATGTTTGGGCAACCATCGTCTCAAGTAAAGCATGATGCTCTCCGAGCCATTCATGGTGCTAAAATGAAGTCAAGAATGTCAGTGATGGAGCATGTGCTCCAGATGATGACGTACTTCAACACGACTGAAATGAATGGGGTCGTTATAGAGGAAGCTAGTCGGGTGAGCTTATTCCTTAGACACTACCGAGTAGCTTCTTATAATTTAAAAGTAATGTTGTTATGAACAAGATTTCCTTTAACCCTTCCACTTTTCTTAATGAAATTCAAACCTTCGAGTCCATGATGAAAGTCAAGGGCAAAGAAGGGGAGAAAAATGTTGTCACCAAGAATCAGAGTTCTGGAACCACGGTTCAAGGATCAAGCCTAAAGGTCGGACCTTCAAGGCAAAGTTCTCAAAGAAGAAGAAGATTGGTGGGTGCAAGAATAAATGCAATGCTCCAAATAAAGTCAAGGCTGAGTAGGATGAAAAATGTTTCCTTTGTTAAAAGCTTGGTCATTGGAAAAGGAATTGTCCTAAGTACAAAGGAATGAAGAAAGACAAAGAAGGTAAATCACATTTACTAATTCTAGAGTCTTGTTATGTGGAATAATCATCCAATGGTTAGACAGTAGGTTCGGGCACCACTTAATCACATTTTTTCTTCATTTCTTGGGAAGTGACTCTTGGCAGGAGTTAGAAGTTGGGTAG

mRNA sequence

ATGGTAACTGCTTTAGAGATGATGATAGCCAGTCATGAGATGTTTGGGCAACCATCGTCTCAAGTAAAGCATGATGCTCTCCGAGCCATTCATGGTGCTAAAATGAAGTCAAGAATGTCAGTGATGGAGCATGTGCTCCAGATGATGACGTACTTCAACACGACTGAAATGAATGGGGTCGTTATAGAGGAAGCTAGTCGGATTTCCTTTAACCCTTCCACTTTTCTTAATGAAATTCAAACCTTCGAGTCCATGATGAAAGTCAAGGGCAAAGAAGGGGAGAAAAATGTTGTCACCAAGAATCAGAGTTCTGGAACCACGGTTCAAGGATCAAGCCTAAAGGAGTTAGAAGTTGGGTAG

Coding sequence (CDS)

ATGGTAACTGCTTTAGAGATGATGATAGCCAGTCATGAGATGTTTGGGCAACCATCGTCTCAAGTAAAGCATGATGCTCTCCGAGCCATTCATGGTGCTAAAATGAAGTCAAGAATGTCAGTGATGGAGCATGTGCTCCAGATGATGACGTACTTCAACACGACTGAAATGAATGGGGTCGTTATAGAGGAAGCTAGTCGGATTTCCTTTAACCCTTCCACTTTTCTTAATGAAATTCAAACCTTCGAGTCCATGATGAAAGTCAAGGGCAAAGAAGGGGAGAAAAATGTTGTCACCAAGAATCAGAGTTCTGGAACCACGGTTCAAGGATCAAGCCTAAAGGAGTTAGAAGTTGGGTAG

Protein sequence

MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISFNPSTFLNEIQTFESMMKVKGKEGEKNVVTKNQSSGTTVQGSSLKELEVG

Homology

[Close]

BLAST of Sed0025749 vs. NCBI nr
Match: KAA0037371.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-20
Identity = 56/102 (54.90%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 1   MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGV 60
           M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EM   
Sbjct: 54  MLTAREIMDSLQEMFGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEA 113

Query: 61  VIEEASRISFNPSTFLNEIQTFESMMKVKGKEGEKNVVTKNQ 103
           VI+EAS+I++  +T LNE+QTFES+MK+KG++GE NV T  +
Sbjct: 114 VIDEASQIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTR 155

[Close]

BLAST of Sed0025749 vs. NCBI nr
Match: KAA0058447.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-19
Identity = 65/141 (46.10%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 1   MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGV 60
           M+TA E+M +  EMFGQ S Q+KHDAL+ I+  +M  R SV EHVL MM +FN  EMNG 
Sbjct: 1   MLTAREIMDSLQEMFGQASYQIKHDALKYIYNTRMNERASVREHVLNMMVHFNVVEMNGA 60

Query: 61  VIEEASRISF-----------------------NPSTFLNEIQTFESMMKVKGKEGEKNV 113
           VI+EAS++SF                         +T LNE+QTFES+MK+KG++GE NV
Sbjct: 61  VIDEASQVSFILESLPESFLQFRSNYVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 120

[Close]

BLAST of Sed0025749 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 64/141 (45.39%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 1   MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGV 60
           M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EMNG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIEEASRISF-----------------------NPSTFLNEIQTFESMMKVKGKEGEKNV 113
           VI+EAS++SF                         +T LNE+QTFES+MK+KG++GE NV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

[Close]

BLAST of Sed0025749 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 64/141 (45.39%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 1   MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGV 60
           M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EMNG 
Sbjct: 87  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 146

Query: 61  VIEEASRISF-----------------------NPSTFLNEIQTFESMMKVKGKEGEKNV 113
           VI+EAS++SF                         +T LNE+QTFES+MK+KG++GE NV
Sbjct: 147 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 206

[Close]

BLAST of Sed0025749 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 64/141 (45.39%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 1   MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGV 60
           M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EMNG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIEEASRISF-----------------------NPSTFLNEIQTFESMMKVKGKEGEKNV 113
           VI+EAS++SF                         +T LNE+QTFES+MK+KG++GE NV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

[Close]

BLAST of Sed0025749 vs. ExPASy TrEMBL
Match: A0A5A7T706 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G00760 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-20
Identity = 56/102 (54.90%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 1   MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGV 60
           M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EM   
Sbjct: 54  MLTAREIMDSLQEMFGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEA 113

Query: 61  VIEEASRISFNPSTFLNEIQTFESMMKVKGKEGEKNVVTKNQ 103
           VI+EAS+I++  +T LNE+QTFES+MK+KG++GE NV T  +
Sbjct: 114 VIDEASQIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTR 155

[Close]

BLAST of Sed0025749 vs. ExPASy TrEMBL
Match: A0A5A7UUN7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00300 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 65/141 (46.10%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 1   MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGV 60
           M+TA E+M +  EMFGQ S Q+KHDAL+ I+  +M  R SV EHVL MM +FN  EMNG 
Sbjct: 1   MLTAREIMDSLQEMFGQASYQIKHDALKYIYNTRMNERASVREHVLNMMVHFNVVEMNGA 60

Query: 61  VIEEASRISF-----------------------NPSTFLNEIQTFESMMKVKGKEGEKNV 113
           VI+EAS++SF                         +T LNE+QTFES+MK+KG++GE NV
Sbjct: 61  VIDEASQVSFILESLPESFLQFRSNYVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 120

[Close]

BLAST of Sed0025749 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.8e-19
Identity = 64/141 (45.39%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 1   MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGV 60
           M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EMNG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIEEASRISF-----------------------NPSTFLNEIQTFESMMKVKGKEGEKNV 113
           VI+EAS++SF                         +T LNE+QTFES+MK+KG++GE NV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

[Close]

BLAST of Sed0025749 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.8e-19
Identity = 64/141 (45.39%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 1   MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGV 60
           M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EMNG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIEEASRISF-----------------------NPSTFLNEIQTFESMMKVKGKEGEKNV 113
           VI+EAS++SF                         +T LNE+QTFES+MK+KG++GE NV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

[Close]

BLAST of Sed0025749 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.8e-19
Identity = 64/141 (45.39%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 1   MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGV 60
           M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EMNG 
Sbjct: 205 MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 264

Query: 61  VIEEASRISF-----------------------NPSTFLNEIQTFESMMKVKGKEGEKNV 113
           VI+EAS++SF                         +T LNE+QTFES+MK+KG++GE NV
Sbjct: 265 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 324

The following BLAST results are available for this feature:

BLAST of Sed0025749 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037371.1	2.2e-20	54.90	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0058447.1	2.4e-19	46.10	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0044955.1	1.2e-18	45.39	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.2e-18	45.39	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	1.2e-18	45.39	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0025749 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025749 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T706	1.1e-20	54.90	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G0076...	[more]
A0A5A7UUN7	1.2e-19	46.10	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G0030...	[more]
A0A5A7SMH8	5.8e-19	45.39	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	5.8e-19	45.39	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	5.8e-19	45.39	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]

BLAST of Sed0025749 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025749.1	Sed0025749.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0005488	binding