Sed0025721 (gene) Chayote v1

Overview


Name	Sed0025721
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG10: 5189046 .. 5189417 (-)
RNA-Seq Expression	Sed0025721
Synteny	Sed0025721

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCACAGAAAAGTCCTATCCCATGGAAATAATAATGCTCCAAAATTCTACTTCCGAGATTTCCAAGCTCTTGCCTTACGGTCGTCGCCGGCACCGCCGCCTTTTTACGGCGGAGATTCTGAATTTGATGCCGTTTGCAAGATTCCTCCGCCGCCGTGCCGGGTTCCCGCCACGGGAAGCCGGTGGGAGGATGAGGACCCTTTCCTGGCGGCGTATAAGGAGTGCACAAAGAGTGTGAAAAATGGGAAGTTTGTGGAGAGGGGAAGTAAAAGAGGTGTGAAGAAGAGTAAGTGGTTGGTGTTTTCTTGTAAGAGCTCTGGTTGTTGTCAAGTTAGAGATGATAGAATTTTTTCCTACACTAGTAAATAG

mRNA sequence

ATGAGCCACAGAAAAGTCCTATCCCATGGAAATAATAATGCTCCAAAATTCTACTTCCGAGATTTCCAAGCTCTTGCCTTACGGTCGTCGCCGGCACCGCCGCCTTTTTACGGCGGAGATTCTGAATTTGATGCCGTTTGCAAGATTCCTCCGCCGCCGTGCCGGGTTCCCGCCACGGGAAGCCGGTGGGAGGATGAGGACCCTTTCCTGGCGGCGTATAAGGAGTGCACAAAGAGTGTGAAAAATGGGAAGTTTGTGGAGAGGGGAAGTAAAAGAGGTGTGAAGAAGAGTAAGTGGTTGGTGTTTTCTTGTAAGAGCTCTGGTTGTTGTCAAGTTAGAGATGATAGAATTTTTTCCTACACTAGTAAATAG

Coding sequence (CDS)

ATGAGCCACAGAAAAGTCCTATCCCATGGAAATAATAATGCTCCAAAATTCTACTTCCGAGATTTCCAAGCTCTTGCCTTACGGTCGTCGCCGGCACCGCCGCCTTTTTACGGCGGAGATTCTGAATTTGATGCCGTTTGCAAGATTCCTCCGCCGCCGTGCCGGGTTCCCGCCACGGGAAGCCGGTGGGAGGATGAGGACCCTTTCCTGGCGGCGTATAAGGAGTGCACAAAGAGTGTGAAAAATGGGAAGTTTGTGGAGAGGGGAAGTAAAAGAGGTGTGAAGAAGAGTAAGTGGTTGGTGTTTTCTTGTAAGAGCTCTGGTTGTTGTCAAGTTAGAGATGATAGAATTTTTTCCTACACTAGTAAATAG

Protein sequence

MSHRKVLSHGNNNAPKFYFRDFQALALRSSPAPPPFYGGDSEFDAVCKIPPPPCRVPATGSRWEDEDPFLAAYKECTKSVKNGKFVERGSKRGVKKSKWLVFSCKSSGCCQVRDDRIFSYTSK

Homology

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BLAST of Sed0025721 vs. NCBI nr
Match: KAG6604109.1 (hypothetical protein SDJN03_04718, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-19
Identity = 63/109 (57.80%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MSHRKVLSHGN-------NNA-PKFYFRDFQALALRSSPAPPPFYGGDSEFDAVCKIPPP 60
           M+HRKVLS  N       N A  KFYFRDFQALAL+ SP+   ++ GDSEFD V KIPPP
Sbjct: 1   MNHRKVLSQRNLPFSWEQNPARSKFYFRDFQALALQPSPS-STYHRGDSEFDVVSKIPPP 60

Query: 61  PCRVPATGSR---WEDEDPFLAAYKECTKSVKNGKFVERGSKRGVKKSK 99
           P R      R    +++DPFL AYKECTKSVKNG FVERG+K     SK
Sbjct: 61  PYRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSK 108

[Close]

BLAST of Sed0025721 vs. NCBI nr
Match: KAG6594957.1 (hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026918.1 hypothetical protein SDJN02_10925, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 9.8e-16
Identity = 64/136 (47.06%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 1   MSHRKVLSHGN---------NNAPKFYFRDFQALALRSSPAPPPFYGGDSEFDAVCKI-P 60
           MSH+K+ S GN           + K  F+D Q L L S          DSEFD V KI P
Sbjct: 1   MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLHS-------VHEDSEFDDVGKIPP 60

Query: 61  PPPCRV--------PATGSRWEDEDPFLAAYKECTKSVKNGKFVERGSKRGVKKSKWLVF 119
           PPPCRV           GSRWE EDPFL AYKECTKSVK GK V        KKSK   F
Sbjct: 61  PPPCRVQPCSLRNASTKGSRWE-EDPFLEAYKECTKSVKKGKLV-------AKKSKLFGF 120

[Close]

BLAST of Sed0025721 vs. NCBI nr
Match: KAA0036397.1 (hypothetical protein E6C27_scaffold18G001980 [Cucumis melo var. makuwa] >TYK12793.1 hypothetical protein E5676_scaffold255G003820 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-13
Identity = 63/131 (48.09%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 3   HRKVLSHGN-----NNAPKF-YFRDFQALALR-SSPAPPPFYGGD-SEFDAV--CKIPPP 62
           HRKVLS GN      N P    FRDFQALAL   S +   +   D S+FD +   KIPPP
Sbjct: 5   HRKVLSQGNIIPHHQNPPGLSKFRDFQALALHLHSHSSSTYKNPDASQFDHLVSSKIPPP 64

Query: 63  PCRVP---ATGSRWEDEDPFLAAYKECTKSVKNGKFVERGSKRGVKKSKWLV--FSCKSS 119
           PCR P   A  ++ E +DPFL AYKECTKSVKN      G    VKKSK+    FSCK+ 
Sbjct: 65  PCRFPPYNAASAKEELDDPFLVAYKECTKSVKNKGINNLGV---VKKSKFFFGRFSCKTI 124

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BLAST of Sed0025721 vs. NCBI nr
Match: KGN48633.1 (hypothetical protein Csa_003745 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 7.8e-13
Identity = 64/135 (47.41%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 3   HRKVLS------HGNNNAPKF-YFRDFQALALR---SSPAPPPFYGGDSEFDAV--CKIP 62
           HRK+LS      H N N P    FRDFQALAL    SS    P   G S+FD +   KIP
Sbjct: 5   HRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNP--DGASQFDHLVSSKIP 64

Query: 63  PPPCRVP-----ATGSRWEDEDPFLAAYKECTKSVKNGKFVERGSKRGVKKSKWLV--FS 119
           PPPCR+P     A  ++ E +DPFL AYKECTKSVKN           VKKSK+L   FS
Sbjct: 65  PPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGI--NNDVGVVKKSKFLFGRFS 124

[Close]

BLAST of Sed0025721 vs. NCBI nr
Match: EXC12618.1 (hypothetical protein L484_012996 [Morus notabilis])

HSP 1 Score: 75.1 bits (183), Expect = 4.7e-10
Identity = 60/157 (38.22%), Postives = 73/157 (46.50%), Query Frame = 0


Query: 1   MSHRKVLSHGN----------------NNAPKFYFRDFQALALRSSPAPPPFYGGD---- 60
           M+HRKV S G+                 +  K Y    QAL L SS + PP         
Sbjct: 1   MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDY--RSQALDLTSSKSSPPSKAQQFSLL 60

Query: 61  -------SEFDAVCKIPPPPC-------RVPATGSRWEDEDPFLAAYKECTKSVKNGKFV 120
                  S  + + KIPPPPC          A G RW+ EDPFL AYKECTK VK GK  
Sbjct: 61  SDGSKLVSATNDLLKIPPPPCLSQPPSRSSSAKGLRWQ-EDPFLLAYKECTKPVKKGKDN 120

Query: 121 ERGSKRG--VKKSKWLVFSCKSSGCCQVRDDRIFSYT 122
           E   KR   + KS ++ FSCK+S  C+VR+D     T
Sbjct: 121 EDNKKRSKVIMKSMFMYFSCKNS--CEVREDNFIKLT 152

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BLAST of Sed0025721 vs. ExPASy TrEMBL
Match: A0A5D3CLL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003820 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.9e-14
Identity = 63/131 (48.09%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 3   HRKVLSHGN-----NNAPKF-YFRDFQALALR-SSPAPPPFYGGD-SEFDAV--CKIPPP 62
           HRKVLS GN      N P    FRDFQALAL   S +   +   D S+FD +   KIPPP
Sbjct: 5   HRKVLSQGNIIPHHQNPPGLSKFRDFQALALHLHSHSSSTYKNPDASQFDHLVSSKIPPP 64

Query: 63  PCRVP---ATGSRWEDEDPFLAAYKECTKSVKNGKFVERGSKRGVKKSKWLV--FSCKSS 119
           PCR P   A  ++ E +DPFL AYKECTKSVKN      G    VKKSK+    FSCK+ 
Sbjct: 65  PCRFPPYNAASAKEELDDPFLVAYKECTKSVKNKGINNLGV---VKKSKFFFGRFSCKTI 124

[Close]

BLAST of Sed0025721 vs. ExPASy TrEMBL
Match: A0A0A0KGJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.8e-13
Identity = 64/135 (47.41%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 3   HRKVLS------HGNNNAPKF-YFRDFQALALR---SSPAPPPFYGGDSEFDAV--CKIP 62
           HRK+LS      H N N P    FRDFQALAL    SS    P   G S+FD +   KIP
Sbjct: 5   HRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNP--DGASQFDHLVSSKIP 64

Query: 63  PPPCRVP-----ATGSRWEDEDPFLAAYKECTKSVKNGKFVERGSKRGVKKSKWLV--FS 119
           PPPCR+P     A  ++ E +DPFL AYKECTKSVKN           VKKSK+L   FS
Sbjct: 65  PPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGI--NNDVGVVKKSKFLFGRFS 124

[Close]

BLAST of Sed0025721 vs. ExPASy TrEMBL
Match: W9RVC8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-10
Identity = 60/157 (38.22%), Postives = 73/157 (46.50%), Query Frame = 0


Query: 1   MSHRKVLSHGN----------------NNAPKFYFRDFQALALRSSPAPPPFYGGD---- 60
           M+HRKV S G+                 +  K Y    QAL L SS + PP         
Sbjct: 1   MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDY--RSQALDLTSSKSSPPSKAQQFSLL 60

Query: 61  -------SEFDAVCKIPPPPC-------RVPATGSRWEDEDPFLAAYKECTKSVKNGKFV 120
                  S  + + KIPPPPC          A G RW+ EDPFL AYKECTK VK GK  
Sbjct: 61  SDGSKLVSATNDLLKIPPPPCLSQPPSRSSSAKGLRWQ-EDPFLLAYKECTKPVKKGKDN 120

Query: 121 ERGSKRG--VKKSKWLVFSCKSSGCCQVRDDRIFSYT 122
           E   KR   + KS ++ FSCK+S  C+VR+D     T
Sbjct: 121 EDNKKRSKVIMKSMFMYFSCKNS--CEVREDNFIKLT 152

[Close]

BLAST of Sed0025721 vs. ExPASy TrEMBL
Match: A0A7J6I4Y5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_017327 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.1e-10
Identity = 56/137 (40.88%), Postives = 70/137 (51.09%), Query Frame = 0


Query: 1   MSHRKVLSHGNNNAPKFYFRD-------------FQALALRSSPAPPPFYGGDSEFDAVC 60
           MSHRKV S G   +  F + D              QAL L SSP+P P     +      
Sbjct: 1   MSHRKVYSQG---SIPFSWEDKPGISKVAQQNPRVQALDLTSSPSPSPSISNTNNDLVKL 60

Query: 61  KIPPPPCRVP---------ATGSRWEDEDPFLAAYKECTKSVKNGKFVERGSKRGVKKSK 116
           KIP PPC  P         A G +W+ EDPFL AYKECTK  K G   ++ SK  V+K+ 
Sbjct: 61  KIPLPPCPTPSQPPSRSNSAKGLKWQ-EDPFLLAYKECTKPQKKGN-NKKASK--VRKTM 120

[Close]

BLAST of Sed0025721 vs. ExPASy TrEMBL
Match: A0A061DHT6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000836 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.1e-10
Identity = 45/103 (43.69%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 26  ALRSSPAPPPFYGGDSEFDAVCKIPPPPCRV--------PATGSRWEDEDPFLAAYKECT 85
           AL  +P+P    GG        K+PPPPC +           G RW  EDPFLAAYKECT
Sbjct: 40  ALNQTPSPSD-AGGSKILVHDKKVPPPPCTMQLVPKRSTSVKGLRWWQEDPFLAAYKECT 99

Query: 86  KSVKNGKFVERGSK---RGVKKSKWLVFSCKSSGCCQVRDDRI 118
           K   NGK+   G K     V+K K + FSCK+S  C VR D +
Sbjct: 100 KGGGNGKWSSEGRKTDGSNVRKKKTITFSCKNS--CDVRGDNL 139

The following BLAST results are available for this feature:

BLAST of Sed0025721 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604109.1	3.3e-19	57.80	hypothetical protein SDJN03_04718, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6594957.1	9.8e-16	47.06	hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0036397.1	2.0e-13	48.09	hypothetical protein E6C27_scaffold18G001980 [Cucumis melo var. makuwa] >TYK1279...	[more]
KGN48633.1	7.8e-13	47.41	hypothetical protein Csa_003745 [Cucumis sativus]	[more]
EXC12618.1	4.7e-10	38.22	hypothetical protein L484_012996 [Morus notabilis]	[more]

BLAST of Sed0025721 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025721 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLL9	9.9e-14	48.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KGJ1	3.8e-13	47.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1	[more]
W9RVC8	2.3e-10	38.22	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1	[more]
A0A7J6I4Y5	5.1e-10	40.88	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_017327 PE=4 SV=1	[more]
A0A061DHT6	5.1e-10	43.69	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000836 PE=4 SV=1	[more]

BLAST of Sed0025721 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33696	T22J18.15-RELATED	coord: 35..119
None	No IPR available	PANTHER	PTHR33696:SF3	SUBFAMILY NOT NAMED	coord: 35..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025721.1	Sed0025721.1	mRNA