
Sed0025656 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATTACTTCACTTTGAAGACCAATCGACACCTTCCCAACAGGTCCCAAATCGAAAAAATCTCAATTTGTTGCCAAAAATAAATAAATAAAAAAGATATTTCCTTTTCTTTTTTTTTACTTTGTGCATTGAAATGCAAGTTTTGATCTTGCTGGTGTTGCCATTGCTGAGTCTCTTTGGGCCATGGGGAATTGTGTTCTTGTTCATAGAGACAAGAAATCTGGTTCGAAATTCAAGTGGTCGATCGGTTCGAAGACAGTGGTTCATGTTAATGAGCCGATCGAGCCGAGCGCTACCGTTTGGGAGAAGGAAATTGAGATGCTTGGTTCGAGTCCTTTGTCTTTGTCCATCAACCATGTAGCCAGTTCACCAAAACTCGGTTTGATTTCTGCCTTCTTTTTATTTAATCTCTTTGATTTATGGCATTTGTGTTGGCATTTTGATAATTTTATGGGATTATCCTGTAGAAGGGCGATGGTTTTTTTTTAAAAAAAAAAATTGGGAATTTCTGATTACCACACTCATGTCTAGATCTAACATTGAAAGTCATTGAAAGAACAAAGATACGAAAAATACTTACAAATTAATGTCATAACTGAATCTTAAACTTAGGGAGAGAAAACATCTTTAAAACTGGACTCAAATAGATGAGATATTATAACATTTATGAAATAGTTGGGTTGTTTTTATATTTGTGTTACATATTTTCTACTATTTTGTGATAATAATAATAATGCGTCACACTTTGAATATGTCATTTCCCTTTCTTTAATTAAATCATCATTTTTTATAACATTTTTATTGTATTTTTGATATACTTACATTGTATGATACATTTTTATAATTACAAATGATGAAAAATATATGTACTTTGTAGAAAGTATTCAAATTTTGTTCTTGATTTTGGGATGAATCATGTTTATTCATTAATTTTTTTTTTCAAAATTAAGATTTTAATCAAATCCCAAAATAATAATAGTCTAAAATAACAATTTTTTTAGTTTCCAAAATTCAGTTTGATTTTTAAAAAATATAGGTAACTTTATAGATTTAGTTTTCAAAATTTATTTTTTAAAAATCAAATAGTTCTCCATGTGTGTGTTTTGGTGAATTGTTCTGTAATTTGATGTTTTGTGTGGCTTTAATGCAGGTAAAGCCGAAGAGATGTTTTTCGATTCACAGGCTTGGTTGGATTCTGATAACGAAGATTTCTTCAGTGTTAATGGAGGTCAAAACTATTTTATTTTTTATTTTTCATTTATGAAAATTAAGCTTACCATAACCACATCAATTTTTTTAACATCAAATCAAAATTTAATTAAAAACTTAAAAAATAGCTTTCAACATTTTATTAAAGAAAGATGAAACCCAAGTTAGAAAGGCAAGAGGTACGTAACTAACCTACCATTCATAAATCACCTAAATCTCTTAGGAGTGTTTGATTTTTGGTTTAGTTATTAGGTGATATATAATGTCATTAAAACTACATTCTTATTGACAGAAACTTCTTTGCAATTTTGTTGTCGTAAAAAAAATATTTTTTTACAAACAGATAATACGCCATCATATGGTAGCACTCCAATACGGTGTTTCGACACAATGGAAATGCCATCTCCCATAGTCATAAAGAAACAACTAATTGAACTATTTCGCGAGAGCTTCGATAGGGAACATGGAACAACAATTGCAAATGCATCAAGCAACAGTCACATTGAGCTCGTGAGAACGGAAGCTAACAATAATGAATCGATTTCGAGTGTGTGTTCGAAATCGATGAAAGGAAAATCAGCACAATCGACCCCGTGCTGCATTCCGGTTCCAAAATTGGCGCGCAGCATGAGCCTTGGCGACAAGAAGAAGAGGATGTCGAGCCCTTGCCGCAGCAGTGGATGATGTGTAATGCCTTTGGCTAATGTGAATTTGTATGTACACTACTTGGGAACGTTTTTTAACTTCAAAATTTGTTTAAATAACGATATG CATTACTTCACTTTGAAGACCAATCGACACCTTCCCAACAGGTCCCAAATCGAAAAAATCTCAATTTGTTGCCAAAAATAAATAAATAAAAAAGATATTTCCTTTTCTTTTTTTTTACTTTGTGCATTGAAATGCAAGTTTTGATCTTGCTGGTGTTGCCATTGCTGAGTCTCTTTGGGCCATGGGGAATTGTGTTCTTGTTCATAGAGACAAGAAATCTGGTTCGAAATTCAAGTGGTCGATCGGTTCGAAGACAGTGGTTCATGTTAATGAGCCGATCGAGCCGAGCGCTACCGTTTGGGAGAAGGAAATTGAGATGCTTGGTTCGAGTCCTTTGTCTTTGTCCATCAACCATGTAGCCAGTTCACCAAAACTCGGTAAAGCCGAAGAGATGTTTTTCGATTCACAGGCTTGGTTGGATTCTGATAACGAAGATTTCTTCAGTGTTAATGGAGATAATACGCCATCATATGGTAGCACTCCAATACGGTGTTTCGACACAATGGAAATGCCATCTCCCATAGTCATAAAGAAACAACTAATTGAACTATTTCGCGAGAGCTTCGATAGGGAACATGGAACAACAATTGCAAATGCATCAAGCAACAGTCACATTGAGCTCGTGAGAACGGAAGCTAACAATAATGAATCGATTTCGAGTGTGTGTTCGAAATCGATGAAAGGAAAATCAGCACAATCGACCCCGTGCTGCATTCCGGTTCCAAAATTGGCGCGCAGCATGAGCCTTGGCGACAAGAAGAAGAGGATGTCGAGCCCTTGCCGCAGCAGTGGATGATGTGTAATGCCTTTGGCTAATGTGAATTTGTATGTACACTACTTGGGAACGTTTTTTAACTTCAAAATTTGTTTAAATAACGATATG ATGGGGAATTGTGTTCTTGTTCATAGAGACAAGAAATCTGGTTCGAAATTCAAGTGGTCGATCGGTTCGAAGACAGTGGTTCATGTTAATGAGCCGATCGAGCCGAGCGCTACCGTTTGGGAGAAGGAAATTGAGATGCTTGGTTCGAGTCCTTTGTCTTTGTCCATCAACCATGTAGCCAGTTCACCAAAACTCGGTAAAGCCGAAGAGATGTTTTTCGATTCACAGGCTTGGTTGGATTCTGATAACGAAGATTTCTTCAGTGTTAATGGAGATAATACGCCATCATATGGTAGCACTCCAATACGGTGTTTCGACACAATGGAAATGCCATCTCCCATAGTCATAAAGAAACAACTAATTGAACTATTTCGCGAGAGCTTCGATAGGGAACATGGAACAACAATTGCAAATGCATCAAGCAACAGTCACATTGAGCTCGTGAGAACGGAAGCTAACAATAATGAATCGATTTCGAGTGTGTGTTCGAAATCGATGAAAGGAAAATCAGCACAATCGACCCCGTGCTGCATTCCGGTTCCAAAATTGGCGCGCAGCATGAGCCTTGGCGACAAGAAGAAGAGGATGTCGAGCCCTTGCCGCAGCAGTGGATGA MGNCVLVHRDKKSGSKFKWSIGSKTVVHVNEPIEPSATVWEKEIEMLGSSPLSLSINHVASSPKLGKAEEMFFDSQAWLDSDNEDFFSVNGDNTPSYGSTPIRCFDTMEMPSPIVIKKQLIELFRESFDREHGTTIANASSNSHIELVRTEANNNESISSVCSKSMKGKSAQSTPCCIPVPKLARSMSLGDKKKRMSSPCRSSG Homology
BLAST of Sed0025656 vs. NCBI nr
Match: XP_022151898.1 (uncharacterized protein At3g27210-like [Momordica charantia]) HSP 1 Score: 231.9 bits (590), Expect = 5.0e-57 Identity = 128/209 (61.24%), Postives = 152/209 (72.73%), Query Frame = 0
BLAST of Sed0025656 vs. NCBI nr
Match: XP_038891766.1 (uncharacterized protein At3g27210-like [Benincasa hispida]) HSP 1 Score: 226.1 bits (575), Expect = 2.7e-55 Identity = 131/213 (61.50%), Postives = 158/213 (74.18%), Query Frame = 0
BLAST of Sed0025656 vs. NCBI nr
Match: XP_023541226.1 (uncharacterized protein At3g27210-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 222.6 bits (566), Expect = 3.0e-54 Identity = 127/211 (60.19%), Postives = 148/211 (70.14%), Query Frame = 0
BLAST of Sed0025656 vs. NCBI nr
Match: XP_022957118.1 (uncharacterized protein At3g27210-like [Cucurbita moschata]) HSP 1 Score: 219.9 bits (559), Expect = 2.0e-53 Identity = 128/213 (60.09%), Postives = 150/213 (70.42%), Query Frame = 0
BLAST of Sed0025656 vs. NCBI nr
Match: XP_022998641.1 (uncharacterized protein At3g27210-like [Cucurbita maxima]) HSP 1 Score: 218.8 bits (556), Expect = 4.4e-53 Identity = 127/213 (59.62%), Postives = 150/213 (70.42%), Query Frame = 0
BLAST of Sed0025656 vs. ExPASy Swiss-Prot
Match: Q9LK32 (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana OX=3702 GN=Y-2 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 5.8e-08 Identity = 53/168 (31.55%), Postives = 77/168 (45.83%), Query Frame = 0
BLAST of Sed0025656 vs. ExPASy TrEMBL
Match: A0A6J1DDF2 (uncharacterized protein At3g27210-like OS=Momordica charantia OX=3673 GN=LOC111019754 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 2.4e-57 Identity = 128/209 (61.24%), Postives = 152/209 (72.73%), Query Frame = 0
BLAST of Sed0025656 vs. ExPASy TrEMBL
Match: A0A6J1GZB4 (uncharacterized protein At3g27210-like OS=Cucurbita moschata OX=3662 GN=LOC111458596 PE=4 SV=1) HSP 1 Score: 219.9 bits (559), Expect = 9.5e-54 Identity = 128/213 (60.09%), Postives = 150/213 (70.42%), Query Frame = 0
BLAST of Sed0025656 vs. ExPASy TrEMBL
Match: A0A6J1KAP3 (uncharacterized protein At3g27210-like OS=Cucurbita maxima OX=3661 GN=LOC111493225 PE=4 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 2.1e-53 Identity = 127/213 (59.62%), Postives = 150/213 (70.42%), Query Frame = 0
BLAST of Sed0025656 vs. ExPASy TrEMBL
Match: A0A5A7SSL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G002000 PE=4 SV=1) HSP 1 Score: 216.5 bits (550), Expect = 1.1e-52 Identity = 131/215 (60.93%), Postives = 153/215 (71.16%), Query Frame = 0
BLAST of Sed0025656 vs. ExPASy TrEMBL
Match: A0A1S3BEU1 (uncharacterized protein At3g27210-like OS=Cucumis melo OX=3656 GN=LOC103488900 PE=4 SV=1) HSP 1 Score: 216.5 bits (550), Expect = 1.1e-52 Identity = 131/215 (60.93%), Postives = 153/215 (71.16%), Query Frame = 0
BLAST of Sed0025656 vs. TAIR 10
Match: AT3G01860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09 Identity = 71/225 (31.56%), Postives = 106/225 (47.11%), Query Frame = 0
BLAST of Sed0025656 vs. TAIR 10
Match: AT3G27210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40860.1); Has 133 Blast hits to 98 proteins in 25 species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). ) HSP 1 Score: 59.3 bits (142), Expect = 4.1e-09 Identity = 53/168 (31.55%), Postives = 77/168 (45.83%), Query Frame = 0
BLAST of Sed0025656 vs. TAIR 10
Match: AT5G40860.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 69 Blast hits to 69 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 55.8 bits (133), Expect = 4.6e-08 Identity = 60/192 (31.25%), Postives = 89/192 (46.35%), Query Frame = 0
BLAST of Sed0025656 vs. TAIR 10
Match: AT3G01860.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 53.5 bits (127), Expect = 2.3e-07 Identity = 50/153 (32.68%), Postives = 74/153 (48.37%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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