Sed0025620 (gene) Chayote v1

Overview


Name	Sed0025620
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG13: 4244977 .. 4246780 (+)
RNA-Seq Expression	Sed0025620
Synteny	Sed0025620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGACCCCTTTATGAATTACATTTTGCATTTACCGAACGTTCACAATCCAAAAGGCGCGCTCTCAATTCCTTCATATACTCTGCAACTTCGCCGATAAGTTTCTCTTCTCCGTCGCCTCTCCGATGCCAACCGCCGCCGAATCTTCCGCTTCTTCCTCCTCTTCTTCTCTCGAATGCGCCACTCCGACGAGCCAGAGCGTTCAACTCGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCTCCGATTCCGCGGCGAGTGTTCCTCGATTCTTTGCCGGTCGATGATTGCTCCGGTTACGAGGCTCTCTCGAAGCTTGAGAATGTGGCGAAGGCGTGGAGGAAATTCGTCATCTGTTTCAGAGTAAGTGCTATCATGATCTCTTTATGATTTCTTCTGTGATTTCTGTGTTTTTGTTTCTTGATTTTGAAATCGATTCGCTGTAATGTGAAAGAACCTGACCTAGATCTAAGATTGTTTGAGAAAACGTGAAGAAATTGTGTTCTATGCTTAAAACAAACGCATTCGTAGAGAATTTTTATTCAAATCGAAGCGAAAAAGAAACGCAAAGACTACATTTACTTTAGAAATTAGAATTATACATAAACCGCAATTCAATCCTTATTGTTTGTCAGCAGGATTTTCCTTTTCTGTACAAATTCGAACATCAAAATTGTATGTACTGAATTAAGTATTCTTTCGGCTGTTCTTTACATGCCTGAAGATACGGAAATTATCTTGTAATTAATGGTTTGATTCAAATTGGAAATTTGTGGTGTTTATTGCAGGGATTTTGGTGTTCTTGGAGTCCATGATAAGACTACATTTACTTTAGAAATTTGAATTTTACCTGAATTGTTATACTCTCTCCATTATTTATAAGCATGATTTTTCTTTAATTTCCGTACAAACTCGAAATTCAAAATTATATTAAATGAGTCTCCAAATGAGTCCAGCAGTTGAGGCTATGAGTTCAAAGATTAGAACACCATCAGATTTCCCAGTTTTTTTTTTTTTTAAAAAAATTTGTATTAAGTGAATTAAGTATCCTATCCGTTGTGTTTATATGCCTGAAGATCGGAAATTATCATGTCATTAATGGTTTGATTCAAATTGGAAATTTGTGGTTTTTATTGCAGGGATTCTGGTGTTCTTGGAATCCATGATTTCACCTTACAACTCTTGAGCAGATCTCTCCCACTAAGATAAGGAAAAGAAGAGAAATTAGGTCTTTATTTTGAGTGTTCAGTTAATTGTATTCTTATACCATTGAAGAAAGAAGAAGAAGAAATCTATATGAATACTTCCATTTGTCATAAAAATGGAAATTATGAAGAATATTCACATTCTTTACCTTCTCATTTTCCAGTGTAGAATTTGAATTTGGTATATACAGTGACCCTTCAAGCTCAGACTGGCTCATCCAGCTTGGAAGGGGATATTTCAAACATAAAAACAAAATGGAATTTCAGAGCTCTGCAATTGTCTGTGCAGGTAAGGCCAGAATATAATCTGCCTTTGCTTTCTGGATAAATCCAAACAGCACATATGAAACAAACAACACAAACACCAAGCATTGCTTTTTTTATTTTGCTTTTTTTTCTCATTATAATCCTCCTTTTGTCTGTTGTAAGCTTGGATTAGATTCCTTTCCATTTGTATTTTTTTTTGAAAGAGCAATACTTTTGATACTTAGCGGTTACGGTTGAGATATGTCTTGAACATACCAATGCCTTGTGATTAGT

mRNA sequence

CTTTGACCCCTTTATGAATTACATTTTGCATTTACCGAACGTTCACAATCCAAAAGGCGCGCTCTCAATTCCTTCATATACTCTGCAACTTCGCCGATAAGTTTCTCTTCTCCGTCGCCTCTCCGATGCCAACCGCCGCCGAATCTTCCGCTTCTTCCTCCTCTTCTTCTCTCGAATGCGCCACTCCGACGAGCCAGAGCGTTCAACTCGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCTCCGATTCCGCGGCGAGTGTTCCTCGATTCTTTGCCGGTCGATGATTGCTCCGGTTACGAGGCTCTCTCGAAGCTTGAGAATGTGGCGAAGGCGTGGAGGAAATTCGTCATCTGTTTCAGAGGATTCTGGTGTTCTTGGAATCCATGATTTCACCTTACAACTCTTGAGCAGATCTCTCCCACTAAGATAAGGAAAAGAAGAGAAATTAGGTCTTTATTTTGAGTGTTCAGTTAATTGTATTCTTATACCATTGAAGAAAGAAGAAGAAGAAATCTATATGAATACTTCCATTTGTCATAAAAATGGAAATTATGAAGAATATTCACATTCTTTACCTTCTCATTTTCCAGTGTAGAATTTGAATTTGGTATATACAGTGACCCTTCAAGCTCAGACTGGCTCATCCAGCTTGGAAGGGGATATTTCAAACATAAAAACAAAATGGAATTTCAGAGCTCTGCAATTGTCTGTGCAGGTAAGGCCAGAATATAATCTGCCTTTGCTTTCTGGATAAATCCAAACAGCACATATGAAACAAACAACACAAACACCAAGCATTGCTTTTTTTATTTTGCTTTTTTTTCTCATTATAATCCTCCTTTTGTCTGTTGTAAGCTTGGATTAGATTCCTTTCCATTTGTATTTTTTTTTGAAAGAGCAATACTTTTGATACTTAGCGGTTACGGTTGAGATATGTCTTGAACATACCAATGCCTTGTGATTAGT

Coding sequence (CDS)

ATGCCAACCGCCGCCGAATCTTCCGCTTCTTCCTCCTCTTCTTCTCTCGAATGCGCCACTCCGACGAGCCAGAGCGTTCAACTCGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCTCCGATTCCGCGGCGAGTGTTCCTCGATTCTTTGCCGGTCGATGATTGCTCCGGTTACGAGGCTCTCTCGAAGCTTGAGAATGTGGCGAAGGCGTGGAGGAAATTCGTCATCTGTTTCAGAGGATTCTGGTGTTCTTGGAATCCATGA

Protein sequence

MPTAAESSASSSSSSLECATPTSQSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPRRVFLDSLPVDDCSGYEALSKLENVAKAWRKFVICFRGFWCSWNP

Homology

[Close]

BLAST of Sed0025620 vs. NCBI nr
Match: XP_022983484.1 (uncharacterized protein LOC111482071 [Cucurbita maxima])

HSP 1 Score: 179.1 bits (453), Expect = 2.0e-41
Identity = 89/107 (83.18%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 1   MPTAAESSASSSSSSLECATPTSQSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
           MP + ESS  SSS  +ECATPT  SVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP
Sbjct: 1   MPISTESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60

Query: 61  IPRRVFLDSLPVDDCSGYEALSKLENVAKAWRKFVICFRGFWCSWNP 108
           IPRRVFLDS P+D CSGYE LSKLE    AWRKFVICFRGFWCSWNP
Sbjct: 61  IPRRVFLDS-PLDVCSGYEVLSKLEKAKTAWRKFVICFRGFWCSWNP 106

[Close]

BLAST of Sed0025620 vs. NCBI nr
Match: XP_023516499.1 (uncharacterized protein LOC111780353 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.7 bits (452), Expect = 2.6e-41
Identity = 89/107 (83.18%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 1   MPTAAESSASSSSSSLECATPTSQSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
           MP + ESS  SSS  +EC TPT  SVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP
Sbjct: 1   MPISTESSTPSSSCFIECGTPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60

Query: 61  IPRRVFLDSLPVDDCSGYEALSKLENVAKAWRKFVICFRGFWCSWNP 108
           IPRRVFLDS PVD CSGYE LSKLE    AWRKFVICFRGFWCSWNP
Sbjct: 61  IPRRVFLDS-PVDVCSGYEVLSKLEKAKTAWRKFVICFRGFWCSWNP 106

[Close]

BLAST of Sed0025620 vs. NCBI nr
Match: XP_022142869.1 (uncharacterized protein LOC111012878 [Momordica charantia])

HSP 1 Score: 177.9 bits (450), Expect = 4.5e-41
Identity = 90/109 (82.57%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MPTAAESSASSSSSS--LECATPTSQSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWS 60
           MP +A SS+SSSSSS  LEC +PTS SVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWS
Sbjct: 1   MPISAASSSSSSSSSSFLECTSPTSPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWS 60

Query: 61  PPIPRRVFLDSLPVDDCSGYEALSKLENVAKAWRKFVICFRGFWCSWNP 108
           PPIPRRVFLDS P + CSGYE  SKL++  KAWRKFVICFRGFWCSWNP
Sbjct: 61  PPIPRRVFLDS-PAEVCSGYEVFSKLDSAKKAWRKFVICFRGFWCSWNP 108

[Close]

BLAST of Sed0025620 vs. NCBI nr
Match: XP_022942868.1 (uncharacterized protein LOC111447770 [Cucurbita moschata])

HSP 1 Score: 177.6 bits (449), Expect = 5.9e-41
Identity = 88/107 (82.24%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 1   MPTAAESSASSSSSSLECATPTSQSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
           MP + ESS  SSS  ++CATPT  SVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP
Sbjct: 1   MPISTESSTPSSSCFIKCATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60

Query: 61  IPRRVFLDSLPVDDCSGYEALSKLENVAKAWRKFVICFRGFWCSWNP 108
           IPRRVFLDS P+D CSGYE LSKLE    AWRKFVICFRGFWCSWNP
Sbjct: 61  IPRRVFLDS-PLDVCSGYEVLSKLEKAKTAWRKFVICFRGFWCSWNP 106

[Close]

BLAST of Sed0025620 vs. NCBI nr
Match: XP_023552147.1 (protein DSE2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.2 bits (435), Expect = 2.5e-39
Identity = 89/115 (77.39%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 1   MPTAAESSASSSSSS---------LECATPTSQSVQLVSKSVSDRLLGKFFDASQFDFDY 60
           MPT+A+SS+SSSSSS         L+CATP S SVQLVSKS SDRLLGKFFDAS+FDFDY
Sbjct: 1   MPTSADSSSSSSSSSSSSSSSSSFLDCATPRSLSVQLVSKSASDRLLGKFFDASKFDFDY 60

Query: 61  EQSSLWSPPIPRRVFLDSLPVDDCSGYEALSKLENVAKAWRKFVICFRGFWCSWN 107
           EQSSLWSPPIPRRVFLDS PVD CSGYE LSKLEN  KAWRK + CF GFWCSWN
Sbjct: 61  EQSSLWSPPIPRRVFLDS-PVDVCSGYEVLSKLENAKKAWRKLITCFGGFWCSWN 114

[Close]

BLAST of Sed0025620 vs. ExPASy TrEMBL
Match: A0A6J1J7J0 (uncharacterized protein LOC111482071 OS=Cucurbita maxima OX=3661 GN=LOC111482071 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.8e-42
Identity = 89/107 (83.18%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 1   MPTAAESSASSSSSSLECATPTSQSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
           MP + ESS  SSS  +ECATPT  SVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP
Sbjct: 1   MPISTESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60

Query: 61  IPRRVFLDSLPVDDCSGYEALSKLENVAKAWRKFVICFRGFWCSWNP 108
           IPRRVFLDS P+D CSGYE LSKLE    AWRKFVICFRGFWCSWNP
Sbjct: 61  IPRRVFLDS-PLDVCSGYEVLSKLEKAKTAWRKFVICFRGFWCSWNP 106

[Close]

BLAST of Sed0025620 vs. ExPASy TrEMBL
Match: A0A6J1CMP9 (uncharacterized protein LOC111012878 OS=Momordica charantia OX=3673 GN=LOC111012878 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.2e-41
Identity = 90/109 (82.57%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MPTAAESSASSSSSS--LECATPTSQSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWS 60
           MP +A SS+SSSSSS  LEC +PTS SVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWS
Sbjct: 1   MPISAASSSSSSSSSSFLECTSPTSPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWS 60

Query: 61  PPIPRRVFLDSLPVDDCSGYEALSKLENVAKAWRKFVICFRGFWCSWNP 108
           PPIPRRVFLDS P + CSGYE  SKL++  KAWRKFVICFRGFWCSWNP
Sbjct: 61  PPIPRRVFLDS-PAEVCSGYEVFSKLDSAKKAWRKFVICFRGFWCSWNP 108

[Close]

BLAST of Sed0025620 vs. ExPASy TrEMBL
Match: A0A6J1FVV1 (uncharacterized protein LOC111447770 OS=Cucurbita moschata OX=3662 GN=LOC111447770 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.8e-41
Identity = 88/107 (82.24%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 1   MPTAAESSASSSSSSLECATPTSQSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
           MP + ESS  SSS  ++CATPT  SVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP
Sbjct: 1   MPISTESSTPSSSCFIKCATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60

Query: 61  IPRRVFLDSLPVDDCSGYEALSKLENVAKAWRKFVICFRGFWCSWNP 108
           IPRRVFLDS P+D CSGYE LSKLE    AWRKFVICFRGFWCSWNP
Sbjct: 61  IPRRVFLDS-PLDVCSGYEVLSKLEKAKTAWRKFVICFRGFWCSWNP 106

[Close]

BLAST of Sed0025620 vs. ExPASy TrEMBL
Match: A0A6J1J4Z5 (uncharacterized protein LOC111482673 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482673 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.1e-36
Identity = 84/104 (80.77%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MPTAAESSASSSSSS--LECATPTSQSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWS 60
           MPT+A+SS+SSSSSS  L+CATP S SVQLVSKS SDRLL KFFDAS+F+FDYEQSSLWS
Sbjct: 1   MPTSADSSSSSSSSSSFLDCATPRSLSVQLVSKSASDRLLDKFFDASKFNFDYEQSSLWS 60

Query: 61  PPIPRRVFLDSLPVDDCSGYEALSKLENVAKAWRKFVICFRGFW 103
           PPIPRRVFLDS P D CSGYE LSKLENV KAWRKF+ CF GFW
Sbjct: 61  PPIPRRVFLDS-PDDVCSGYEVLSKLENVKKAWRKFITCFGGFW 103

[Close]

BLAST of Sed0025620 vs. ExPASy TrEMBL
Match: A0A6J1EYJ9 (uncharacterized protein LOC111437603 OS=Cucurbita moschata OX=3662 GN=LOC111437603 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 83/111 (74.77%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 1   MPTAAESSASSSSSS-------LECATPTSQSVQLVSKSVSDRLLGKFFDASQFDFDYEQ 60
           MPT+A+SS+SSSSSS       L+CATP S SVQLVSK  SDRLLGKFFDAS+FDFDYEQ
Sbjct: 1   MPTSADSSSSSSSSSSSSSSSFLDCATPKSLSVQLVSKLASDRLLGKFFDASKFDFDYEQ 60

Query: 61  SSLWSPPIPRRVFLDSLPVDDCSGYEALSKLENVAKAWRKFVICFRGFWCS 105
           SSLWSPPIPRRVFLDS P D CSGYE LSKLEN  KAWRK + CF G  CS
Sbjct: 61  SSLWSPPIPRRVFLDS-PADVCSGYEVLSKLENAKKAWRKLITCFGGLLCS 110

[Close]

BLAST of Sed0025620 vs. TAIR 10
Match: AT4G15140.1 (unknown protein; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 25/55 (45.45%), Postives = 31/55 (56.36%), Query Frame = 0


Query: 22 TSQSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPRRVFLDS-LPVDDC 76
          T++ V+ +   +   LL KF D S F FDY QSSLWSP +PR     S L  D C
Sbjct: 21 TTKVVEYLQPVMCRELLCKFPDNSAFGFDYSQSSLWSPLLPRNYASPSDLDSDSC 75

The following BLAST results are available for this feature:

BLAST of Sed0025620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983484.1	2.0e-41	83.18	uncharacterized protein LOC111482071 [Cucurbita maxima]	[more]
XP_023516499.1	2.6e-41	83.18	uncharacterized protein LOC111780353 [Cucurbita pepo subsp. pepo]	[more]
XP_022142869.1	4.5e-41	82.57	uncharacterized protein LOC111012878 [Momordica charantia]	[more]
XP_022942868.1	5.9e-41	82.24	uncharacterized protein LOC111447770 [Cucurbita moschata]	[more]
XP_023552147.1	2.5e-39	77.39	protein DSE2-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0025620 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7J0	9.8e-42	83.18	uncharacterized protein LOC111482071 OS=Cucurbita maxima OX=3661 GN=LOC111482071...	[more]
A0A6J1CMP9	2.2e-41	82.57	uncharacterized protein LOC111012878 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1FVV1	2.8e-41	82.24	uncharacterized protein LOC111447770 OS=Cucurbita moschata OX=3662 GN=LOC1114477...	[more]
A0A6J1J4Z5	6.1e-36	80.77	uncharacterized protein LOC111482673 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EYJ9	1.2e-34	74.77	uncharacterized protein LOC111437603 OS=Cucurbita moschata OX=3662 GN=LOC1114376...	[more]

BLAST of Sed0025620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15140.1	1.2e-04	45.45	unknown protein; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34287:SF12	SUBFAMILY NOT NAMED	coord: 3..104
None	No IPR available	PANTHER	PTHR34287	OS06G0551500 PROTEIN-RELATED	coord: 3..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025620.1	Sed0025620.1	mRNA