Sed0025584 (gene) Chayote v1

Overview


Name	Sed0025584
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L18a
Location	LG08: 38923544 .. 38926321 (-)
RNA-Seq Expression	Sed0025584
Synteny	Sed0025584

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATAGCAAGCAAAAACCCTAACTCCGCACCTCAGAAAGCAGTCGCAGAGAGACATCATCAGCTTCTCTTCTTCTCCGAGATAATATGGTGTCTTTTAGGGTAACTCGCAATTTCCGATCTCAAATCTCTTACTTTTTCTCTAATGGATCATATATGAAGCAACCACTAAGGATTTCCCCATCTATTACGATGATTTTTTTTTTTCTATATTTATTAGATAAGTGCGAAGATTGGTGCATTGGATATGTGATTTTCTTGTTCGTTGATTTGATTTTTGTTGTACTTCCGAAGTAGACATGAGGATTCAAGGCGTGTTCAATTAATTAGTGTATGTGGGGTTTTTTTTTTGTTTGCAGTTCCATCAATACCAGGTTGTGGGTAGGGCTTTGCCGTCTGAATCAGATGAGCACCCTAAGATTTACCGAATGAAGCTATGGGCCACGAATGAAGTTCGGGCTAAATCCAAGTTTTGGTGAGTTTCACGTTATCAATGGCAATGCATTTGAGTTTGGGATTGCATAATTGTGACGAGTTGTTTACTTGCTTCGAATCAGGTACTTTTTGAGGAAGTACAAGAAGGTCAAGAAGAGTAAAGGACAAGTTCTTGCTATTAATGAGGTAAGCTGTATGCTTGAGACAATGGACTTCACTCTTATTGTTGTTGTTTTCCCTCTCTTTTGAATTTTGTGAATTTTTTTGCTTCTTGAAAAAGTGACCCTTTCACTGTATTTTAGCCTAGGCTGATGCTTACGTGATAGTTTACTGATTTTGAAGGAAGTGAATTACTTACATTTTCCATGTTTCTGTCCATTCAGCTAATTAGTGGTCTTCAATTGTATTCTATATTTTATATGTAGAAAATAGCAAAGGTTTTCTTTTCTTAGTAATCGACATGTCGAATTGAATGCATCTTTCTTATATCCAAGTTCCCTTGTTTTTCCAGTAATAATTGGGACATATGAAATAGGAAGCATGCTCAGTTTTGGGGTTGTGTAGTTGTTGGATGGGATGTTCTCTTTTTCTTTTTTATAAACCAAATAAAATGAATTGTACGTTGTGGGCATGTTGGTGTGGTGAATTGGGAAAGATTCATCTTTGTTGGTGGTGACATTGAGATTGAGGAATGTTATTTGATTCTTCAGTTAAGAAAAAAATGAGAAGAGATAACTGGAGAAGGAAAGTGTGGGGGAAAATGTTTGACTAACAAGTAACATGAGGGTTAAAGGGGAAATCAAAGTGAAGTTCTTCATAGATTTGAGTCGACTCAAATTTAATTTAATAATTGCTTCATTGAGAAGTCCCCTCAAACCACCCCATCTAAAGATAAGGTTGTCAAAAGAACTAAAACCTAGAAAAGAGGAATCACTAAGACAAGTAGCTAGAAAAGGCGAGGTAAGGGGACGATGTAAGAGAGGAGTCAAGCCATGTTTTAAGAGAGAGGAATGATGAAAAGGCTGCGATAAAATGAGTTCAATGGATATAGGCACGTTTACTATTCAAAGGGATATTGACCGTTGACTAGGTTATATCATGGAAAGATTTCTATCTGTAGAGTTTTAAAACCTATATATGCTTTCTTACATGCAATGCTAATGGTAGGTTTTTACTCAATCTCGATTGACTGAATTCTGTAAATCGATTTGGCATTATTGATATTTGGAACTTGTTGAATTTGAGGCTAATGAAATGCAAGCACGGTTTTTACTTGATCTGATTTGACTTTGCATAGTTTCTTTCTTGGTCTGATGTGATCAACTTTGTAAATTGATTCAACTTTATTGATATTTGGACCTTGTTGAATTGTAGTAGATGACCTATGTATTAGACTTCATAGAAGTTGAATCAATTTGTTCCTTTGGTTGTCTCCAAGGGGTGGTGCAGTGGTTGAAAACTTAGGCTTTTAGGGTATGCTCCCCTAAAGATCCTAAGTTCGAGACTCACTTGTGACACTACTTCTTCGATGTCTCTGATGCCTTGCCTAGGGACGCGCGTGGTTAAAGTTTGTTCATTTGGTTGAAATTTGGGTTTATTGTTGTCCCTTGCTTTGCCTGTAACTTACCTCTTGTGGCCTTAATTGATGATTATGATATTACTGCAGGGTCATATTTGCTGTACTTTGAGGTTTTTAAGTTTCTTTTACTTCTTTCTAATGCACATCTTCAATTTGGTTTATTTGCAGATATTTGAAAAGAATCCCACCAAAATTAATAACTATGGTATCTGGTTGCGCTACCAGAGTCGAACTGGCTATCACAATATGTACAAGGAATATCGCGACACCACTCTCAACGGTGCGGTGGAACACATGTACACCGAGATGGCTTCTCGGCACAGGGTCCGATTTCCATGCATCCAAATCATCAAGACTGCTACTGTTCCTGCCAAGCTGTGCAAGAGGGAAAGCACCAAACAATTTCATGATTCCAAGATCAAATTTCCTTTGGTGTTCAAGAAGGTTAGACCTCCAACCAGAAGGCTGAAGACCACATACAAGGCCTCAAGACCCAATCTGTTCATGTAAACTCTCTTCCTTTTAATGGAATAGAGAGTTTGGTTTTAAAAGATTAAAATTTTGGGTATATTTTATCTTTCACTATTTAGTTAGCATTGAATTTGCTTAATTTTAATCTAGGACGTCAAGTTTTGTTTTTGCCTTTTTCTTTTTGCTGCTGACTCGTGGAAGTGGTTGGTTTTTATTTGAAGAACAATTATGTTTTATTGAGCTTTTTTTTAATATCAGAACTAATTATATAATTCACGAGAGGTAAACCACTCG

mRNA sequence

TATATAGCAAGCAAAAACCCTAACTCCGCACCTCAGAAAGCAGTCGCAGAGAGACATCATCAGCTTCTCTTCTTCTCCGAGATAATATGGTGTCTTTTAGGTTCCATCAATACCAGGTTGTGGGTAGGGCTTTGCCGTCTGAATCAGATGAGCACCCTAAGATTTACCGAATGAAGCTATGGGCCACGAATGAAGTTCGGGCTAAATCCAAGTTTTGGTACTTTTTGAGGAAGTACAAGAAGGTCAAGAAGAGTAAAGGACAAGTTCTTGCTATTAATGAGATATTTGAAAAGAATCCCACCAAAATTAATAACTATGGTATCTGGTTGCGCTACCAGAGTCGAACTGGCTATCACAATATGTACAAGGAATATCGCGACACCACTCTCAACGGTGCGGTGGAACACATGTACACCGAGATGGCTTCTCGGCACAGGGTCCGATTTCCATGCATCCAAATCATCAAGACTGCTACTGTTCCTGCCAAGCTGTGCAAGAGGGAAAGCACCAAACAATTTCATGATTCCAAGATCAAATTTCCTTTGGTGTTCAAGAAGGTTAGACCTCCAACCAGAAGGCTGAAGACCACATACAAGGCCTCAAGACCCAATCTGTTCATGTAAACTCTCTTCCTTTTAATGGAATAGAGAGTTTGGTTTTAAAAGATTAAAATTTTGGGTATATTTTATCTTTCACTATTTAGTTAGCATTGAATTTGCTTAATTTTAATCTAGGACGTCAAGTTTTGTTTTTGCCTTTTTCTTTTTGCTGCTGACTCGTGGAAGTGGTTGGTTTTTATTTGAAGAACAATTATGTTTTATTGAGCTTTTTTTTAATATCAGAACTAATTATATAATTCACGAGAGGTAAACCACTCG

Coding sequence (CDS)

ATGGTGTCTTTTAGGTTCCATCAATACCAGGTTGTGGGTAGGGCTTTGCCGTCTGAATCAGATGAGCACCCTAAGATTTACCGAATGAAGCTATGGGCCACGAATGAAGTTCGGGCTAAATCCAAGTTTTGGTACTTTTTGAGGAAGTACAAGAAGGTCAAGAAGAGTAAAGGACAAGTTCTTGCTATTAATGAGATATTTGAAAAGAATCCCACCAAAATTAATAACTATGGTATCTGGTTGCGCTACCAGAGTCGAACTGGCTATCACAATATGTACAAGGAATATCGCGACACCACTCTCAACGGTGCGGTGGAACACATGTACACCGAGATGGCTTCTCGGCACAGGGTCCGATTTCCATGCATCCAAATCATCAAGACTGCTACTGTTCCTGCCAAGCTGTGCAAGAGGGAAAGCACCAAACAATTTCATGATTCCAAGATCAAATTTCCTTTGGTGTTCAAGAAGGTTAGACCTCCAACCAGAAGGCTGAAGACCACATACAAGGCCTCAAGACCCAATCTGTTCATGTAA

Protein sequence

MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQVLAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM

Homology

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BLAST of Sed0025584 vs. NCBI nr
Match: XP_030516163.1 (uncharacterized protein LOC115729679 [Rhodamnia argentea])

HSP 1 Score: 353.2 bits (905), Expect = 1.3e-93
Identity = 171/178 (96.07%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           MV+FRFHQYQVVGRALP+ESDEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKS GQV
Sbjct: 615 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 674

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVRF
Sbjct: 675 LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 734

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVFKKVRPPTR+LKTTYKASRPNLFM
Sbjct: 735 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 792

[Close]

BLAST of Sed0025584 vs. NCBI nr
Match: KAF8043504.1 (hypothetical protein BT93_A1733 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 353.2 bits (905), Expect = 1.3e-93
Identity = 171/178 (96.07%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           MV+FRFHQYQVVGRALP+ESDEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKS GQV
Sbjct: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVRF
Sbjct: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVFKKVRPPTR+LKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Sed0025584 vs. NCBI nr
Match: XP_030551506.1 (60S ribosomal protein L18a [Rhodamnia argentea])

HSP 1 Score: 352.1 bits (902), Expect = 2.9e-93
Identity = 170/178 (95.51%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           MV+FRFHQYQVVGRALP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKS GQV
Sbjct: 1   MVTFRFHQYQVVGRALPTEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVRF
Sbjct: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVFKKVRPPTR+LKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Sed0025584 vs. NCBI nr
Match: XP_022936960.1 (60S ribosomal protein L18a isoform X1 [Cucurbita moschata] >XP_022976860.1 60S ribosomal protein L18a [Cucurbita maxima])

HSP 1 Score: 351.7 bits (901), Expect = 3.8e-93
Identity = 170/178 (95.51%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           MV+FRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKS GQ+
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTR+LKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Sed0025584 vs. NCBI nr
Match: KAG6591832.1 (60S ribosomal protein L18a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 351.7 bits (901), Expect = 3.8e-93
Identity = 170/178 (95.51%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           MV+FRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKS GQ+
Sbjct: 73  MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 132

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR 
Sbjct: 133 LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 192

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTR+LKTTYKASRPNLFM
Sbjct: 193 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 250

[Close]

BLAST of Sed0025584 vs. ExPASy Swiss-Prot
Match: Q9ATF5 (60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 4.8e-91
Identity = 160/178 (89.89%), Postives = 170/178 (95.51%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           MV+FRFHQYQVVGR LPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKS GQ+
Sbjct: 1   MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPTKI NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVRF
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTAT+PAKLCKRES+KQFH+SKIKFPLV +K+RPP+R+LKT YKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178

[Close]

BLAST of Sed0025584 vs. ExPASy Swiss-Prot
Match: P51418 (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 329.7 bits (844), Expect = 2.0e-89
Identity = 158/178 (88.76%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           M +FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRK KKVKKS GQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEI+EKNPT I N+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVRF
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVF+KVRPP+R+LKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of Sed0025584 vs. ExPASy Swiss-Prot
Match: Q9LUD4 (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 7.7e-89
Identity = 157/178 (88.20%), Postives = 166/178 (93.26%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           M  FRFHQYQVVGRALP+E+DEHPKIYRMKLW  NEV AKSKFWYF+RK KKVKKS GQ+
Sbjct: 1   MGGFRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPT I NYGIWLRYQSRTGYHNMYKEYRDTTLNG VE MYTEMASRHRVRF
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRE TKQFH+SKIKFPLVF+KVRPP+R+LKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of Sed0025584 vs. ExPASy Swiss-Prot
Match: Q943F3 (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE=1 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 3.8e-88
Identity = 156/178 (87.64%), Postives = 166/178 (93.26%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           M +FRFHQYQVVGR LP+ +DEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKS GQ+
Sbjct: 1   MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPT I NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVRF
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATV  KLCKR++TKQFH S IKFPLV++KVRPPTR+LKTT+KASRPNLFM
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

[Close]

BLAST of Sed0025584 vs. ExPASy Swiss-Prot
Match: Q8L7K0 (60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.2e-87
Identity = 154/178 (86.52%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKS GQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPT I N+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVRF
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTR+LKTT+KA++PNLFM
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of Sed0025584 vs. ExPASy TrEMBL
Match: A0A6J1IKM6 (60S ribosomal protein L18a OS=Cucurbita maxima OX=3661 GN=LOC111477104 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.8e-93
Identity = 170/178 (95.51%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           MV+FRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKS GQ+
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTR+LKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Sed0025584 vs. ExPASy TrEMBL
Match: A0A6J1FF70 (60S ribosomal protein L18a OS=Cucurbita moschata OX=3662 GN=LOC111443392 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.8e-93
Identity = 170/178 (95.51%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           MV+FRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKS GQ+
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTR+LKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Sed0025584 vs. ExPASy TrEMBL
Match: A0A6P3ZGB1 (60S ribosomal protein L18a OS=Ziziphus jujuba OX=326968 GN=LOC107413592 PE=3 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.4e-93
Identity = 170/178 (95.51%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           MV+FRFHQYQVVGRALP+ESDEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKS GQV
Sbjct: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPTKI+NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIDNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRS 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVFKKVRPPTR+LKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Sed0025584 vs. ExPASy TrEMBL
Match: A0A6P6G3D7 (aspartyl protease family protein 2 OS=Ziziphus jujuba OX=326968 GN=LOC107416111 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.1e-93
Identity = 169/178 (94.94%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           MVSFRFHQYQVVGRALP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKS GQV
Sbjct: 606 MVSFRFHQYQVVGRALPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 665

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMY EMASRHRVR 
Sbjct: 666 LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYNEMASRHRVRS 725

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPPTR+LKTTYKASRPNLFM
Sbjct: 726 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 783

[Close]

BLAST of Sed0025584 vs. ExPASy TrEMBL
Match: A0A059DH70 (Ribosomal_L18A domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02018 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.1e-93
Identity = 170/178 (95.51%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           MV+FRFHQYQVVGRALP+ SDEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKS GQV
Sbjct: 36  MVTFRFHQYQVVGRALPTGSDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 95

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVRF
Sbjct: 96  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 155

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVFKKVRPPTR+LKTTYKASRPNLFM
Sbjct: 156 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 213

[Close]

BLAST of Sed0025584 vs. TAIR 10
Match: AT2G34480.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 329.7 bits (844), Expect = 1.4e-90
Identity = 158/178 (88.76%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           M +FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRK KKVKKS GQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEI+EKNPT I N+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVRF
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVF+KVRPP+R+LKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of Sed0025584 vs. TAIR 10
Match: AT3G14600.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 327.8 bits (839), Expect = 5.5e-90
Identity = 157/178 (88.20%), Postives = 166/178 (93.26%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           M  FRFHQYQVVGRALP+E+DEHPKIYRMKLW  NEV AKSKFWYF+RK KKVKKS GQ+
Sbjct: 1   MGGFRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPT I NYGIWLRYQSRTGYHNMYKEYRDTTLNG VE MYTEMASRHRVRF
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRE TKQFH+SKIKFPLVF+KVRPP+R+LKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of Sed0025584 vs. TAIR 10
Match: AT1G29965.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 321.2 bits (822), Expect = 5.1e-88
Identity = 154/178 (86.52%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQV 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKS GQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRF 120
           LAINEIFEKNPT I N+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVRF
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           PCIQIIKTATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTR+LKTT+KA++PNLFM
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of Sed0025584 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 )

HSP 1 Score: 320.1 bits (819), Expect = 1.1e-87
Identity = 153/176 (86.93%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 3   SFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKYKKVKKSKGQVLA 62
           S   HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKS GQ+LA
Sbjct: 137 SIALHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLA 196

Query: 63  INEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRFPC 122
           INEIFEKNPT I N+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVRFPC
Sbjct: 197 INEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPC 256

Query: 123 IQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 179
           IQIIKTATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTR+LKTT+KA++PNLFM
Sbjct: 257 IQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 312

The following BLAST results are available for this feature:

BLAST of Sed0025584 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030516163.1	1.3e-93	96.07	uncharacterized protein LOC115729679 [Rhodamnia argentea]	[more]
KAF8043504.1	1.3e-93	96.07	hypothetical protein BT93_A1733 [Corymbia citriodora subsp. variegata]	[more]
XP_030551506.1	2.9e-93	95.51	60S ribosomal protein L18a [Rhodamnia argentea]	[more]
XP_022936960.1	3.8e-93	95.51	60S ribosomal protein L18a isoform X1 [Cucurbita moschata] >XP_022976860.1 60S r...	[more]
KAG6591832.1	3.8e-93	95.51	60S ribosomal protein L18a, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0025584 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ATF5	4.8e-91	89.89	60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1	[more]
P51418	2.0e-89	88.76	60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=...	[more]
Q9LUD4	7.7e-89	88.20	60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=...	[more]
Q943F3	3.8e-88	87.64	60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE...	[more]
Q8L7K0	7.2e-87	86.52	60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=...	[more]

BLAST of Sed0025584 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IKM6	1.8e-93	95.51	60S ribosomal protein L18a OS=Cucurbita maxima OX=3661 GN=LOC111477104 PE=3 SV=1	[more]
A0A6J1FF70	1.8e-93	95.51	60S ribosomal protein L18a OS=Cucurbita moschata OX=3662 GN=LOC111443392 PE=3 SV...	[more]
A0A6P3ZGB1	2.4e-93	95.51	60S ribosomal protein L18a OS=Ziziphus jujuba OX=326968 GN=LOC107413592 PE=3 SV=...	[more]
A0A6P6G3D7	3.1e-93	94.94	aspartyl protease family protein 2 OS=Ziziphus jujuba OX=326968 GN=LOC107416111 ...	[more]
A0A059DH70	4.1e-93	95.51	Ribosomal_L18A domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRS...	[more]

BLAST of Sed0025584 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34480.1	1.4e-90	88.76	Ribosomal protein L18ae/LX family protein	[more]
AT3G14600.1	5.5e-90	88.20	Ribosomal protein L18ae/LX family protein	[more]
AT1G29965.1	5.1e-88	86.52	Ribosomal protein L18ae/LX family protein	[more]
AT1G29970.2	1.1e-87	86.93	60S ribosomal protein L18A-1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023573	Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A	PFAM	PF01775	Ribosomal_L18A	coord: 7..128 e-value: 7.1E-53 score: 177.8
IPR021138	60S ribosomal protein L18a/ L20, eukaryotes	PIRSF	PIRSF002190	Ribosomal_L18a	coord: 1..178 e-value: 2.8E-71 score: 236.5
None	No IPR available	GENE3D	3.10.20.10		coord: 72..147 e-value: 1.7E-41 score: 142.4
None	No IPR available	GENE3D	3.10.20.10		coord: 1..71 e-value: 5.1E-37 score: 127.5
None	No IPR available	PANTHER	PTHR10052:SF45	60S RIBOSOMAL PROTEIN L18A	coord: 1..137 coord: 138..178
None	No IPR available	SUPERFAMILY	160374	RplX-like	coord: 71..146
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 138..178
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 1..137
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	HAMAP	MF_00273	Ribosomal_L18Ae	coord: 6..69 score: 23.548927

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025584.1	Sed0025584.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003735	structural constituent of ribosome