Sed0025572 (gene) Chayote v1

Overview


Name	Sed0025572
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Translocon-associated protein subunit beta
Location	LG06: 3673408 .. 3676565 (-)
RNA-Seq Expression	Sed0025572
Synteny	Sed0025572

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATTTCCATTTGATCTCTAATTTTTGCGTACCTAATTTATACGGCGGAGTCTTCTCTAAATCTCCCATTTCGTTGACGCCTCCCCTTTTCGCCGATCATCTCCGTTTGCCCTAATTTCGAACGATTTCATGGCGAATCCGATTCAATCTCCTCTGATCTGTATCCTTCTAGCTTTGCTGTTCGTCTCGTCGGCGATTGCAAGCGCCGATGTTCCGTTCATCGTCGCGCACAAGAAGGCGGCGCTCACTCGCCTCAAATCCGGCGCCGAACGCGTCTCTGTCTCCATCGACATTTACAATCAAGGATCTTCGTATGTTCTGTTCGATTTCTTTGATCTGACTTTGGTTTTGGTTTTGGTTTTGGTTTTTGGTTTTTTAGATTCAGTTTTATGAGCTTTGGTTTGTGCTGTTCTAGATCGGATCGTTGTTTTCGCATGCGTGGTTTGACCTCCTTTGTTTTTGTTTTGGATCTGAATTCGATTTGGTTCTGTGCTGTTTTGTATTTAAGTAGTGGAGATAATTGTTAAGTTTAGGGTTTGTGAAGATGTTCTCAATGATGGATGGATAGATTTCTTTAGGTTTTGAATTGTTTGGAGAGGTGGAGAACTGGATGTGAGATTTGGTGCATTGGAATTTTATTAATTGTGGAGGAAGTTGGTAATTATCTTGGTTCAGTACCAAAATTCTCTAAACTATAATGAACTGGTTACTGGAACAAGGCATGGTTTCCTTAACTGCATCTATAAATTCTGTGTTTTGGTTTTCTAGGTAAATTTCCGTAAACCGTTTTACCAAATCACTTTATTTTGATGATTGCTGCATTTTCCGTGAGAATATTCCTTCAGCGATTGTAGGTTCCTAGTTCTTGTTTCACATTTGAAATTTGTTCTATAGGGCTGCTATTTTTTGCATGCAACTAGAAGAAATAAACTGTCTCTTGGAGTGATTTTTCGTCTAAATTATTCAATTTGTCGTAGATTTTTTTTGGTAATGAATGGTAGCCGTGGACGAGAGAAGGTGTATGCGTTTGTGTGTGTTGAGCATAGCTGAAAAGTAGAAATTGTGTAAATCAACGTGGTACTAGTATCTATTTGACCTAAATGAAGCAAATAGTGAGAACTTTGGAAGATTAATAGTTGTTCTTTTGACATGTTCACTGGAGCTTATTTTAAGATAAATGAGAGAGTTAAATGGGAACTTTGGAAGGGAGGAGTTGCTTGATTGTTTTACATTTTTTTTTTCTTGTTTTTGTAGTAAATTTCACAATCTCTATCCTGCTGCTTTTGTTGGGTCCTCTCTCTACTGTTCATGAAGCTGATCATCCGTGCGAATTTATCCTTTCAGTTTTATTCACATCTTATTTCTTCATTTTGACGTTGCTTAGAGTTTCTGTAAATTCCTCACATTATGTACTCTTGATGGAATCTTTTTATTTTTCTTTTTAATCTTAACTATATTTTCCTTTTGTATATTTCATTTCTAAATGGCCTAGTTTCTTAATTTTTTCCTCTCGTGTATTTCTCTTGTAACGATTACCAGAACCGCTTATGATGTAAGTCTGAATGATGCAAGCTGGCCAGGAGATGTCTTTGATGTTATCAGTGGTGAAACTTCCAAATCGTGGGAAAGACTCGATGCGTAAGCGATCATTTGTTTTGTACTTTTTCTTATATGTCATAGTAACTATCCATTGGGTTTTCATTCCATTCACACAAATCTACTGTTTGACAGTGGTGGTCATCTATCACATTCTTTTGAGTTGGAAGCAAAAACGAAAGGAATGTTTCATGGTTCACCTGCTGTTGTCACATTCCGTGTCCCTACAAAGTCTGATTTACAGGTTAAATATCCTATCAATGATGGTCAAGGTTGTGTTCTAATTACTTAAATTTGCCGATGTCTTTCTTACCATTCATCTGGATATCTGTAGGAGGCTTTATCAACTCCAATTCTACCCTTGGACGTCCTCGCTGACAGGGTACCAGAGAAGAAGCTTGAGTTGGTAAGTTTATCCTGAAAATTTATGTCATGCTTCAAGCTTAATGATTTATAGTCTTATCAATTTGGTTAACTGAAGCTACTTTTGCCTTTGCATGGAATTTATCCTTCTCTGGGGCGTGAATTCGACAGGTTAAGGTATGATCCATTCCGTGCTCTTAATTCTTATGTTAATATCCGTTAAATCACCAATAACCCTAATGCTTAATTTAGTGAATTGAGGTCAATTTAATTATATCAACCAACACTCTCTTACAGCTCACTTGTGGGCTTGAAAATTTGAGAATGTTTATCCAGTGAAAATTAATATTAATTGGAGATGAAATCATCATGAATTGTGGCTTGGGAAACCAAAAGGTCATAGGTTCAATTTAATTTTTGGTAGCTACCTATTTAGGAATTAATTTCTTATGGATTTTCTTACGACACTCAAAAGTTGTAGGGTTGGGTGGGTTGTCCCGTGAGAATAGTTGGAGTGCGCGTAACTGGGTCAAACCACTCACGAATAAAACAAAATATATTAATTGGAGATAAAACGATTCGGCAGGAGTTTGAACACAATACCTCCTCCTGTTTGGATTTCATGTTGAATTTCTATCCATTCTCCCCGTTGTATTATCCCCCACCTCTTGCTGCATCGACTTTTGTCACTTCGACCACTGTCTGTTTATTCACACGATAATTTTCCTCCCTGCAGAGATTGCTTGCAAAGTACGGCTCCCTGATCTCGGTGATCTCCATCGTTGCTCTGTTCGTCTCCCTTGTGGCCAGCCCGTCGAAATCTTCCTCAAAAGGAAGCAAGAAGAAGCGTTAATTAAAGGTTGGGAGGCAGATGGGAAAGTAGTTTTTAACTGTCTTACTTTTGTTCCTGAGATATTTAGTTGGGTTTATTGAGGTACAGAAACTTTTTGAATTGATAGTTTTTTGTTGAATGAATTAGAGCTGGAGGAAACAGGAGTTAAAATTCATAGGGCACTCACGAGCAGAGTCAGTCAAATACATGTTGAGCTCTTGTTGGTTTTTTTAAGTCATGTGGGATTTGTTCATCATGTTACTGAGTTATTTCTTCTTTTTTAGCCATGAATCTCTGTCTTGTGTTCTTTTCCTTGTGCAAATGATTAGAAAATGGACACGGTTTGTTCTTTTTTTAAAAAAAA

mRNA sequence

AAAAAATTTCCATTTGATCTCTAATTTTTGCGTACCTAATTTATACGGCGGAGTCTTCTCTAAATCTCCCATTTCGTTGACGCCTCCCCTTTTCGCCGATCATCTCCGTTTGCCCTAATTTCGAACGATTTCATGGCGAATCCGATTCAATCTCCTCTGATCTGTATCCTTCTAGCTTTGCTGTTCGTCTCGTCGGCGATTGCAAGCGCCGATGTTCCGTTCATCGTCGCGCACAAGAAGGCGGCGCTCACTCGCCTCAAATCCGGCGCCGAACGCGTCTCTGTCTCCATCGACATTTACAATCAAGGATCTTCAACCGCTTATGATGTAAGTCTGAATGATGCAAGCTGGCCAGGAGATGTCTTTGATGTTATCAGTGGTGAAACTTCCAAATCGTGGGAAAGACTCGATGCTGGTGGTCATCTATCACATTCTTTTGAGTTGGAAGCAAAAACGAAAGGAATGTTTCATGGTTCACCTGCTGTTGTCACATTCCGTGTCCCTACAAAGTCTGATTTACAGGAGGCTTTATCAACTCCAATTCTACCCTTGGACGTCCTCGCTGACAGGGTACCAGAGAAGAAGCTTGAGTTGGTTAAGAGATTGCTTGCAAAGTACGGCTCCCTGATCTCGGTGATCTCCATCGTTGCTCTGTTCGTCTCCCTTGTGGCCAGCCCGTCGAAATCTTCCTCAAAAGGAAGCAAGAAGAAGCGTTAATTAAAGGTTGGGAGGCAGATGGGAAAGTAGTTTTTAACTGTCTTACTTTTGTTCCTGAGATATTTAGTTGGGTTTATTGAGGTACAGAAACTTTTTGAATTGATAGTTTTTTGTTGAATGAATTAGAGCTGGAGGAAACAGGAGTTAAAATTCATAGGGCACTCACGAGCAGAGTCAGTCAAATACATGTTGAGCTCTTGTTGGTTTTTTTAAGTCATGTGGGATTTGTTCATCATGTTACTGAGTTATTTCTTCTTTTTTAGCCATGAATCTCTGTCTTGTGTTCTTTTCCTTGTGCAAATGATTAGAAAATGGACACGGTTTGTTCTTTTTTTAAAAAAAA

Coding sequence (CDS)

ATGGCGAATCCGATTCAATCTCCTCTGATCTGTATCCTTCTAGCTTTGCTGTTCGTCTCGTCGGCGATTGCAAGCGCCGATGTTCCGTTCATCGTCGCGCACAAGAAGGCGGCGCTCACTCGCCTCAAATCCGGCGCCGAACGCGTCTCTGTCTCCATCGACATTTACAATCAAGGATCTTCAACCGCTTATGATGTAAGTCTGAATGATGCAAGCTGGCCAGGAGATGTCTTTGATGTTATCAGTGGTGAAACTTCCAAATCGTGGGAAAGACTCGATGCTGGTGGTCATCTATCACATTCTTTTGAGTTGGAAGCAAAAACGAAAGGAATGTTTCATGGTTCACCTGCTGTTGTCACATTCCGTGTCCCTACAAAGTCTGATTTACAGGAGGCTTTATCAACTCCAATTCTACCCTTGGACGTCCTCGCTGACAGGGTACCAGAGAAGAAGCTTGAGTTGGTTAAGAGATTGCTTGCAAAGTACGGCTCCCTGATCTCGGTGATCTCCATCGTTGCTCTGTTCGTCTCCCTTGTGGCCAGCCCGTCGAAATCTTCCTCAAAAGGAAGCAAGAAGAAGCGTTAA

Protein sequence

MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVTFRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVASPSKSSSKGSKKKR

Homology

[Close]

BLAST of Sed0025572 vs. NCBI nr
Match: XP_022928574.1 (translocon-associated protein subunit beta-like isoform X1 [Cucurbita moschata] >XP_023529270.1 translocon-associated protein subunit beta-like [Cucurbita pepo subsp. pepo] >KAG6588872.1 Translocon-associated protein subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 323.6 bits (828), Expect = 1.2e-84
Identity = 173/194 (89.18%), Postives = 182/194 (93.81%), Query Frame = 0


Query: 1   MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGS 60
           MANP  +PL+ +LLALL VSS IA++DVPFIVAHKKA+LTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPTPAPLVYVLLALLLVSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT
Sbjct: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120

Query: 121 FRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVA 180
           FRVPTKS LQEALSTPILPLDVLADR+PE K E VKRLLAKYGSLISV SIV LF+ LVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRLPENKFEWVKRLLAKYGSLISVNSIVILFIYLVA 180

Query: 181 SPSKSSSKGSKKKR 195
           SPSKSS+KGSKKKR
Sbjct: 181 SPSKSSAKGSKKKR 194

[Close]

BLAST of Sed0025572 vs. NCBI nr
Match: XP_022156478.1 (translocon-associated protein subunit beta [Momordica charantia])

HSP 1 Score: 322.0 bits (824), Expect = 3.5e-84
Identity = 171/194 (88.14%), Postives = 182/194 (93.81%), Query Frame = 0


Query: 1   MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGS 60
           MANPIQSPLI +L ALLFV+S IA++DVPFIVAHKKA+LTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDVSLNDASWP DVFD+ISGETSKSWERLDAG HLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVA 180
           FRVPTKS LQEA STPILPLDVLADR PEKK E VKRLLAKYGSLISV+SIV LF+ LVA
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIVVLFIYLVA 180

Query: 181 SPSKSSSKGSKKKR 195
           SPSKS++KGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Sed0025572 vs. NCBI nr
Match: XP_038894726.1 (translocon-associated protein subunit beta [Benincasa hispida])

HSP 1 Score: 319.3 bits (817), Expect = 2.3e-83
Identity = 166/194 (85.57%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGS 60
           MANPIQ PLI +LLALLFVSS IA++DVPFIVAHKKA+LTRLKSG ERVSVSIDIYN+GS
Sbjct: 1   MANPIQPPLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNRGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYD SLNDASWP D+FD++SGETSKSWERLDAGGH+SHSFELEAKTKG+FHGSPA++T
Sbjct: 61  STAYDASLNDASWPEDMFDIVSGETSKSWERLDAGGHISHSFELEAKTKGLFHGSPAIIT 120

Query: 121 FRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVA 180
           FRVPTKS LQEALSTPILPLD+LAD+ PEKKLE VKRLLAKYGSLISVISIV LF+ LVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDILADKPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180

Query: 181 SPSKSSSKGSKKKR 195
           SPSKS++KGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Sed0025572 vs. NCBI nr
Match: XP_022983434.1 (translocon-associated protein subunit beta isoform X1 [Cucurbita maxima])

HSP 1 Score: 318.9 bits (816), Expect = 3.0e-83
Identity = 170/194 (87.63%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGS 60
           MAN IQ+ LI +LLALLFVSS IAS+DVPFIVAHKKA LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDV+LNDASWPGDVFD++SGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVA 180
           FRVPTKS LQEALSTPILPLDVLADR PEKK E VKRLLAKYGSLISV+S V LFV LVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSSSKGSKKKR 195
           SPSKS++KGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Sed0025572 vs. NCBI nr
Match: XP_022989726.1 (translocon-associated protein subunit beta-like [Cucurbita maxima])

HSP 1 Score: 318.9 bits (816), Expect = 3.0e-83
Identity = 170/194 (87.63%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGS 60
           MANP  +PL+ +LLALL VSS IA++DVPFIVAHKKA+LTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPTPAPLVYVLLALLLVSSTIANSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT
Sbjct: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120

Query: 121 FRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVA 180
           FRVPTK  LQEALSTPILPLDVLA+++PE K E VKRLLAKYGSLISV SIV LF+ LVA
Sbjct: 121 FRVPTKPALQEALSTPILPLDVLAEKLPENKFEWVKRLLAKYGSLISVNSIVILFIYLVA 180

Query: 181 SPSKSSSKGSKKKR 195
           SPSKSS+KGSKKKR
Sbjct: 181 SPSKSSAKGSKKKR 194

[Close]

BLAST of Sed0025572 vs. ExPASy Swiss-Prot
Match: Q9CPW5 (Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-07
Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = 0


Query: 9   LICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGSSTAYDVSL 68
           L  ++LALL VS A   A     +   K+ L R       +++  +IYN GSS A DV L
Sbjct: 4   LAVVVLALLAVSQAEEGAR----LLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 63

Query: 69  NDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVTF 122
           +D S+P + F ++SG  +  W+R+    ++SH+  L     G F+ + A +T+
Sbjct: 64  SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112

[Close]

BLAST of Sed0025572 vs. ExPASy Swiss-Prot
Match: P23438 (Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=SSR2 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07
Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 9   LICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGSSTAYDVSL 68
           L  +LLAL  VS A   A     +   K+ L R       +++  +IYN GSS A DV L
Sbjct: 4   LASVLLALFAVSHAEEGAR----LLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 63

Query: 69  NDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVTF 122
           +D S+P + F ++SG  +  W+R+    ++SH+  L     G F+ + A VT+
Sbjct: 64  SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTY 112

[Close]

BLAST of Sed0025572 vs. ExPASy Swiss-Prot
Match: Q5E9E4 (Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-07
Identity = 31/100 (31.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 22  AIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDASWPGDVFDVI 81
           A+  A+    +   K+ L R       +++  +IYN GSS A DV L+D S+P + F ++
Sbjct: 13  AVTQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIV 72

Query: 82  SGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVTF 122
           SG  +  W+R+    ++SH+  L     G F+ + A VT+
Sbjct: 73  SGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTY 112

[Close]

BLAST of Sed0025572 vs. ExPASy Swiss-Prot
Match: P43308 (Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.0e-07
Identity = 34/110 (30.91%), Postives = 58/110 (52.73%), Query Frame = 0


Query: 12  ILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDA 71
           ++LAL  V+ A   A     +   K+ L R       +++  +IYN GSS A DV L+D 
Sbjct: 7   VVLALFAVTQAEEGAR----LLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDD 66

Query: 72  SWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVTF 122
           S+P + F ++SG  +  W+R+    ++SH+  L     G F+ + A +T+
Sbjct: 67  SFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112

[Close]

BLAST of Sed0025572 vs. ExPASy TrEMBL
Match: A0A6J1EL83 (Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111435340 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.8e-85
Identity = 173/194 (89.18%), Postives = 182/194 (93.81%), Query Frame = 0


Query: 1   MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGS 60
           MANP  +PL+ +LLALL VSS IA++DVPFIVAHKKA+LTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPTPAPLVYVLLALLLVSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT
Sbjct: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120

Query: 121 FRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVA 180
           FRVPTKS LQEALSTPILPLDVLADR+PE K E VKRLLAKYGSLISV SIV LF+ LVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRLPENKFEWVKRLLAKYGSLISVNSIVILFIYLVA 180

Query: 181 SPSKSSSKGSKKKR 195
           SPSKSS+KGSKKKR
Sbjct: 181 SPSKSSAKGSKKKR 194

[Close]

BLAST of Sed0025572 vs. ExPASy TrEMBL
Match: A0A6J1DQQ5 (Translocon-associated protein subunit beta OS=Momordica charantia OX=3673 GN=LOC111023364 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.7e-84
Identity = 171/194 (88.14%), Postives = 182/194 (93.81%), Query Frame = 0


Query: 1   MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGS 60
           MANPIQSPLI +L ALLFV+S IA++DVPFIVAHKKA+LTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDVSLNDASWP DVFD+ISGETSKSWERLDAG HLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVA 180
           FRVPTKS LQEA STPILPLDVLADR PEKK E VKRLLAKYGSLISV+SIV LF+ LVA
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIVVLFIYLVA 180

Query: 181 SPSKSSSKGSKKKR 195
           SPSKS++KGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Sed0025572 vs. ExPASy TrEMBL
Match: A0A6J1J7C6 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482040 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.4e-83
Identity = 170/194 (87.63%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGS 60
           MAN IQ+ LI +LLALLFVSS IAS+DVPFIVAHKKA LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDV+LNDASWPGDVFD++SGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVA 180
           FRVPTKS LQEALSTPILPLDVLADR PEKK E VKRLLAKYGSLISV+S V LFV LVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSSSKGSKKKR 195
           SPSKS++KGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Sed0025572 vs. ExPASy TrEMBL
Match: A0A6J1JKZ0 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111486725 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.4e-83
Identity = 170/194 (87.63%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGS 60
           MANP  +PL+ +LLALL VSS IA++DVPFIVAHKKA+LTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPTPAPLVYVLLALLLVSSTIANSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT
Sbjct: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120

Query: 121 FRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVA 180
           FRVPTK  LQEALSTPILPLDVLA+++PE K E VKRLLAKYGSLISV SIV LF+ LVA
Sbjct: 121 FRVPTKPALQEALSTPILPLDVLAEKLPENKFEWVKRLLAKYGSLISVNSIVILFIYLVA 180

Query: 181 SPSKSSSKGSKKKR 195
           SPSKSS+KGSKKKR
Sbjct: 181 SPSKSSAKGSKKKR 194

[Close]

BLAST of Sed0025572 vs. ExPASy TrEMBL
Match: A0A6J1FAK9 (Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111442301 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.2e-83
Identity = 169/194 (87.11%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGS 60
           MAN IQ+ LI +LLA LFVSS IAS+DVPFIVAHKKA LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDV+LNDASWPGDVFD++SGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVA 180
           FRVPTKS LQEALSTPILPLDVLADR PEKK E VKRLLAKYGSLISV+S V LFV LVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSSSKGSKKKR 195
           SPSKS++KGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Sed0025572 vs. TAIR 10
Match: AT5G14030.1 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-62
Identity = 124/194 (63.92%), Postives = 153/194 (78.87%), Query Frame = 0


Query: 1   MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGS 60
           MA  +   LI  +   + VS++ A+++VPF+V HKKA L RLKSGAERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           S+AYDV+L D SW    F+V++G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAVVT
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVA 180
           FR+PTK  LQEA STP+LPLD+LAD+ P K L++ KRLLAKYGSL+SVIS+V  F+ LVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSSSKGSKKKR 195
           +P  + SK S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

[Close]

BLAST of Sed0025572 vs. TAIR 10
Match: AT5G14030.2 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-62
Identity = 124/194 (63.92%), Postives = 153/194 (78.87%), Query Frame = 0


Query: 1   MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGS 60
           MA  +   LI  +   + VS++ A+++VPF+V HKKA L RLKSGAERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           S+AYDV+L D SW    F+V++G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAVVT
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVA 180
           FR+PTK  LQEA STP+LPLD+LAD+ P K L++ KRLLAKYGSL+SVIS+V  F+ LVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSSSKGSKKKR 195
           +P  + SK S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

[Close]

BLAST of Sed0025572 vs. TAIR 10
Match: AT5G14030.3 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-62
Identity = 124/194 (63.92%), Postives = 153/194 (78.87%), Query Frame = 0


Query: 1   MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGS 60
           MA  +   LI  +   + VS++ A+++VPF+V HKKA L RLKSGAERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           S+AYDV+L D SW    F+V++G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAVVT
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVA 180
           FR+PTK  LQEA STP+LPLD+LAD+ P K L++ KRLLAKYGSL+SVIS+V  F+ LVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSSSKGSKKKR 195
           +P  + SK S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

[Close]

BLAST of Sed0025572 vs. TAIR 10
Match: AT5G14030.4 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-62
Identity = 124/194 (63.92%), Postives = 153/194 (78.87%), Query Frame = 0


Query: 1   MANPIQSPLICILLALLFVSSAIASADVPFIVAHKKAALTRLKSGAERVSVSIDIYNQGS 60
           MA  +   LI  +   + VS++ A+++VPF+V HKKA L RLKSGAERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           S+AYDV+L D SW    F+V++G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAVVT
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSDLQEALSTPILPLDVLADRVPEKKLELVKRLLAKYGSLISVISIVALFVSLVA 180
           FR+PTK  LQEA STP+LPLD+LAD+ P K L++ KRLLAKYGSL+SVIS+V  F+ LVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSSSKGSKKKR 195
           +P  + SK S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

The following BLAST results are available for this feature:

BLAST of Sed0025572 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928574.1	1.2e-84	89.18	translocon-associated protein subunit beta-like isoform X1 [Cucurbita moschata] ...	[more]
XP_022156478.1	3.5e-84	88.14	translocon-associated protein subunit beta [Momordica charantia]	[more]
XP_038894726.1	2.3e-83	85.57	translocon-associated protein subunit beta [Benincasa hispida]	[more]
XP_022983434.1	3.0e-83	87.63	translocon-associated protein subunit beta isoform X1 [Cucurbita maxima]	[more]
XP_022989726.1	3.0e-83	87.63	translocon-associated protein subunit beta-like [Cucurbita maxima]	[more]

BLAST of Sed0025572 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CPW5	1.2e-07	32.74	Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1...	[more]
P23438	1.6e-07	33.63	Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=...	[more]
Q5E9E4	2.8e-07	31.00	Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV...	[more]
P43308	8.0e-07	30.91	Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 ...	[more]

BLAST of Sed0025572 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EL83	5.8e-85	89.18	Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1DQQ5	1.7e-84	88.14	Translocon-associated protein subunit beta OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1J7C6	1.4e-83	87.63	Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1JKZ0	1.4e-83	87.63	Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1FAK9	4.2e-83	87.11	Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of Sed0025572 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14030.1	1.4e-62	63.92	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.2	1.4e-62	63.92	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.3	1.4e-62	63.92	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.4	1.4e-62	63.92	translocon-associated protein beta (TRAPB) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF05753	TRAP_beta	coord: 16..188 e-value: 1.5E-51 score: 174.3
None	No IPR available	PANTHER	PTHR12861	TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT	coord: 10..194
None	No IPR available	PANTHER	PTHR12861:SF7	TRANSLOCON-ASSOCIATED PROTEIN SUBUNIT BETA-LIKE	coord: 10..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025572.1	Sed0025572.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane