Sed0025541 (gene) Chayote v1

Overview
NameSed0025541
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG10: 25558185 .. 25558904 (-)
RNA-Seq ExpressionSed0025541
SyntenySed0025541
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTGTTTCCACTAAGTCAATGGTTTCACAGCGTGGAAAAAAAGGATGCCAAGAAACAAATTGAAGGCAGAGTCAAAGAATTAGGTAGTTTAAATATATAAAAATTGAAGTACACCACCGTCCCTGGCGATTTTAAAAAAATAAAGCCTTATTGTTAGTGTACATAAAAGGGCAAATTCTGAAGTCTATTTTAGAGAGTTTTGTAGAGAAGCTTGACAGATTTGGTAGATCCACAAGCAAGGATGAAGCGTTGTTGTTTTGAAGTTCTTGCTGTGATGGTATTGTTGGCAATGGTGTTTGTTCATGTCGAATGCAGACCACTTAGATCGATGGCGGATACTTTTCATGTGACGGGAATTGCATGGGAGAGAGTCGCCGGAGGTAACCGGATCGGGTTTGTTACCTTGGACAGTCGTCGAAAGGGAGGGTGGTCATTCAAGCATGCTTCTGGGCCGAGCAAAAGAGGACCAGGGCACTAGCCGAAGAGATAATTCGAAGAAACTTCTGACCATTCTTTATTTGTTATTGTTGTATGAATTTTGTCATTTGGTTTGCATTATGGGTTCTTTTTCTTTCTTTCCTTTTTTCCTCATTGACAAATGGGTTGCAAACTTCATAGTTTAGAGAGATCAGACATTAAACAGAAGTTTGATCTCCCTAAGCAAATAGTAAGAGTAACAAATAGGGAGTTGAGTTCAGGATTTGTATTGTATTCTGGA

mRNA sequence

CTTTTGTTTCCACTAAGTCAATGGTTTCACAGCGTGGAAAAAAAGGATGCCAAGAAACAAATTGAAGGCAGAGTCAAAGAATTAGGTAGTTTAAATATATAAAAATTGAAGTACACCACCGTCCCTGGCGATTTTAAAAAAATAAAGCCTTATTGTTAGTGTACATAAAAGGGCAAATTCTGAAGTCTATTTTAGAGAGTTTTGTAGAGAAGCTTGACAGATTTGGTAGATCCACAAGCAAGGATGAAGCGTTGTTGTTTTGAAGTTCTTGCTGTGATGGTATTGTTGGCAATGGTGTTTGTTCATGTCGAATGCAGACCACTTAGATCGATGGCGGATACTTTTCATGTGACGGGAATTGCATGGGAGAGAGTCGCCGGAGGTAACCGGATCGGGTTTGTTACCTTGGACAGTCGTCGAAAGGGAGGGTGGTCATTCAAGCATGCTTCTGGGCCGAGCAAAAGAGGACCAGGGCACTAGCCGAAGAGATAATTCGAAGAAACTTCTGACCATTCTTTATTTGTTATTGTTGTATGAATTTTGTCATTTGGTTTGCATTATGGGTTCTTTTTCTTTCTTTCCTTTTTTCCTCATTGACAAATGGGTTGCAAACTTCATAGTTTAGAGAGATCAGACATTAAACAGAAGTTTGATCTCCCTAAGCAAATAGTAAGAGTAACAAATAGGGAGTTGAGTTCAGGATTTGTATTGTATTCTGGA

Coding sequence (CDS)

ATGAAGCGTTGTTGTTTTGAAGTTCTTGCTGTGATGGTATTGTTGGCAATGGTGTTTGTTCATGTCGAATGCAGACCACTTAGATCGATGGCGGATACTTTTCATGTGACGGGAATTGCATGGGAGAGAGTCGCCGGAGGTAACCGGATCGGGTTTGTTACCTTGGACAGTCGTCGAAAGGGAGGGTGGTCATTCAAGCATGCTTCTGGGCCGAGCAAAAGAGGACCAGGGCACTAG

Protein sequence

MKRCCFEVLAVMVLLAMVFVHVECRPLRSMADTFHVTGIAWERVAGGNRIGFVTLDSRRKGGWSFKHASGPSKRGPGH
Homology
[Close]
BLAST of Sed0025541 vs. NCBI nr
Match: KAG6585686.1 (hypothetical protein SDJN03_18419, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.8 bits (247), Expect = 1.1e-17
Identity = 51/78 (65.38%), Postives = 54/78 (69.23%), Query Frame = 0 

Query: 1  MKRCCFEVLAVMVLLAMVFVHVECRPLRSMADTFHVTGIAWERVAGGNRIGFVTLDSRRK 60
          MKRCC  VLAVM+LLAMVFVHV+CR L SM DT  V G   E V  GN   FV     RK
Sbjct: 1  MKRCCVGVLAVMILLAMVFVHVDCRVLTSMGDTRAVMGTGREHVGKGNTTEFVRFGGGRK 60

Query: 61 GGWSFKHASGPSKRGPGH 79
          G W+FKH SGPSKRGPGH
Sbjct: 61 GRWAFKHTSGPSKRGPGH 78

[Close]
BLAST of Sed0025541 vs. NCBI nr
Match: KAA0060930.1 (hypothetical protein E6C27_scaffold501G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.2e-13
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 1   MKRCCFEVLAVMVLLAMVFVHVECRPLRSMADTFHVTGIA-WERVAGGNRIGFVTLDSRR 60
           MK   F V AVM+LLAMVFVHV+CR LRS  +T    G    E+V  G+  G V+ +  R
Sbjct: 51  MKPSFFGVFAVMILLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTSGLVSFNGHR 110

Query: 61  KGGWSFKHASGPSKRGPGH 79
           KG W+FKHASGPS RGPGH
Sbjct: 111 KGSWAFKHASGPSMRGPGH 129

[Close]
BLAST of Sed0025541 vs. NCBI nr
Match: KAE8652069.1 (hypothetical protein Csa_018550 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 45/79 (56.96%), Postives = 51/79 (64.56%), Query Frame = 0 

Query: 1   MKRCCFEVLAVMVLLAMVFVHVECRPLRSMADTFHVTGIA-WERVAGGNRIGFVTLDSRR 60
           MK   F V AVM LLAMVFVHV+CR LRS  +T    G    E+V  G+  G V+    R
Sbjct: 43  MKARFFGVFAVMTLLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHR 102

Query: 61  KGGWSFKHASGPSKRGPGH 79
           KG W+FKHASGPS RGPGH
Sbjct: 103 KGSWAFKHASGPSMRGPGH 121

[Close]
BLAST of Sed0025541 vs. ExPASy TrEMBL
Match: A0A5A7V0S4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00630 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 1   MKRCCFEVLAVMVLLAMVFVHVECRPLRSMADTFHVTGIA-WERVAGGNRIGFVTLDSRR 60
           MK   F V AVM+LLAMVFVHV+CR LRS  +T    G    E+V  G+  G V+ +  R
Sbjct: 51  MKPSFFGVFAVMILLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTSGLVSFNGHR 110

Query: 61  KGGWSFKHASGPSKRGPGH 79
           KG W+FKHASGPS RGPGH
Sbjct: 111 KGSWAFKHASGPSMRGPGH 129

[Close]
BLAST of Sed0025541 vs. ExPASy TrEMBL
Match: A0A0A0LKP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G355010 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.3e-13
Identity = 45/79 (56.96%), Postives = 51/79 (64.56%), Query Frame = 0 

Query: 1  MKRCCFEVLAVMVLLAMVFVHVECRPLRSMADTFHVTGIA-WERVAGGNRIGFVTLDSRR 60
          MK   F V AVM LLAMVFVHV+CR LRS  +T    G    E+V  G+  G V+    R
Sbjct: 1  MKARFFGVFAVMTLLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHR 60

Query: 61 KGGWSFKHASGPSKRGPGH 79
          KG W+FKHASGPS RGPGH
Sbjct: 61 KGSWAFKHASGPSMRGPGH 79

The following BLAST results are available for this feature:
BLAST of Sed0025541 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585686.11.1e-1765.38hypothetical protein SDJN03_18419, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0060930.12.2e-1356.96hypothetical protein E6C27_scaffold501G00630 [Cucumis melo var. makuwa][more]
KAE8652069.11.1e-1256.96hypothetical protein Csa_018550 [Cucumis sativus][more]
BLAST of Sed0025541 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0025541 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V0S41.1e-1356.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LKP95.3e-1356.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G355010 PE=4 SV=1[more]
BLAST of Sed0025541 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0025541.1Sed0025541.1mRNA