Sed0025498 (gene) Chayote v1

Overview


Name	Sed0025498
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG03: 35030938 .. 35032107 (+)
RNA-Seq Expression	Sed0025498
Synteny	Sed0025498

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCAACTTCCTTTATGTATTGTAATAGAGAGAATCTAAGGGTAAAGAATAGATGAGAAAAGAAAAATCCAAACCCTTCACTCATATTTAATATGAATGATGATTTTCACCCATCTTAAATTTGAACCATATTTAACCACTTTCCACTGTATTTGGTCCTCATTTCCATGGTTTTTTGTGCCCAATCCTTCTCGGTTTTGACTGTTTTTGGATCACCCAAATGAACCCACCAAATCATCCCCAATTGAATTCAGCTCTAAATTCACTGATTTTGGAGATTTGATGGGATTGGTTCTAAAGACGATACAAATAATACTCCAAACGTCCGTCTCTGTCTTCTTTATATATTAAAACTCTGGTTTTGATCAAAGCTTGGTTGAAGATGAAGAAATGGAGATTATGGGGAGGTTTCAAACGCTCAATCCTGTTCCCCACTAAGCTATTTTATCTCTCAAGGCTTCTCCATAAGCCTAAAGGTAAATCGCTTTCTCTTAATATTGTTTTTGTTTTTGTTTGGAAACTGGAAAATCAGAGCTTCGTTCCTCCCTCTAACTTGTGTTGATAATGATAATGGCAGGCAATGGAAATGGGCTAGTGAGCCTGTACAAGGACATAGAATCTTGTGGAGAGTATAGAGATATTCAAGTGATGTGGGATATGATTCACTCCTGTCCTCCCCACACTGTCCACAAAAACACATTGCCCTTTTCTTCTACTTGGAGATCATGCTGTTTCCACCAAACCTGAAAACCCAGCACCACAGAATGTTCATAACAAAAGGAATCACTTTTGGGATACTCAAAAGTTTTCACTCATGTTCTAAAGCTAGTATATTTTGATTGATGTCATATATGATTCACCAGATGATGAATAGAGGTTTCAATCGAAGCCAGTTTTTTCGATTTCCTTGAGAATTTTGGATGTTCATGATCTGCAGGAGAAGTTTGGATCTTGTTGGTTTTTCCCATCAGTTGAAGATGGCGCAACTGTTTGGTTTTTTTAGTTCTTGGTGTGTTGATGGTCTGATATTTTTGAAATATTGGTTCTTGATTTTGAGCCATTCGTTTTGCAGATACTACATTGGACAAGAATGTAATGCCAAAAGCTTATTTTGGGAGGAAACTATTAGCTATTGAACTTATTCAATGATCCATAGATGACTGCTTCATC

mRNA sequence

GCCCAACTTCCTTTATGTATTGTAATAGAGAGAATCTAAGGGTAAAGAATAGATGAGAAAAGAAAAATCCAAACCCTTCACTCATATTTAATATGAATGATGATTTTCACCCATCTTAAATTTGAACCATATTTAACCACTTTCCACTGTATTTGGTCCTCATTTCCATGGTTTTTTGTGCCCAATCCTTCTCGGTTTTGACTGTTTTTGGATCACCCAAATGAACCCACCAAATCATCCCCAATTGAATTCAGCTCTAAATTCACTGATTTTGGAGATTTGATGGGATTGGTTCTAAAGACGATACAAATAATACTCCAAACGTCCGTCTCTGTCTTCTTTATATATTAAAACTCTGGTTTTGATCAAAGCTTGGTTGAAGATGAAGAAATGGAGATTATGGGGAGGTTTCAAACGCTCAATCCTGTTCCCCACTAAGCTATTTTATCTCTCAAGGCTTCTCCATAAGCCTAAAGGCAATGGAAATGGGCTAGTGAGCCTGTACAAGGACATAGAATCTTGTGGAGAGTATAGAGATATTCAAGTGATGTGGGATATGATTCACTCCTGTCCTCCCCACACTGTCCACAAAAACACATTGCCCTTTTCTTCTACTTGGAGATCATGCTGTTTCCACCAAACCTGAAAACCCAGCACCACAGAATGTTCATAACAAAAGGAATCACTTTTGGGATACTCAAAAGTTTTCACTCATGTTCTAAAGCTAGTATATTTTGATTGATGTCATATATGATTCACCAGATGATGAATAGAGGTTTCAATCGAAGCCAGTTTTTTCGATTTCCTTGAGAATTTTGGATGTTCATGATCTGCAGGAGAAGTTTGGATCTTGTTGGTTTTTCCCATCAGTTGAAGATGGCGCAACTGTTTGGTTTTTTTAGTTCTTGGTGTGTTGATGGTCTGATATTTTTGAAATATTGGTTCTTGATTTTGAGCCATTCGTTTTGCAGATACTACATTGGACAAGAATGTAATGCCAAAAGCTTATTTTGGGAGGAAACTATTAGCTATTGAACTTATTCAATGATCCATAGATGACTGCTTCATC

Coding sequence (CDS)

ATGAAGAAATGGAGATTATGGGGAGGTTTCAAACGCTCAATCCTGTTCCCCACTAAGCTATTTTATCTCTCAAGGCTTCTCCATAAGCCTAAAGGCAATGGAAATGGGCTAGTGAGCCTGTACAAGGACATAGAATCTTGTGGAGAGTATAGAGATATTCAAGTGATGTGGGATATGATTCACTCCTGTCCTCCCCACACTGTCCACAAAAACACATTGCCCTTTTCTTCTACTTGGAGATCATGCTGTTTCCACCAAACCTGA

Protein sequence

MKKWRLWGGFKRSILFPTKLFYLSRLLHKPKGNGNGLVSLYKDIESCGEYRDIQVMWDMIHSCPPHTVHKNTLPFSSTWRSCCFHQT

Homology

[Close]

BLAST of Sed0025498 vs. NCBI nr
Match: KAE8649569.1 (hypothetical protein Csa_018089 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 1.9e-29
Identity = 70/96 (72.92%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 1  MKKWRLWGGFKRSILFPTKLFYL---SRLLHKPKGNGNGLVSLYKDIESCGEYRDIQVMW 60
          MK+WRLWG FKRS LFPTKLF+L   S LLHKPKGNGN L+SLYKDIESCGEYRDIQVMW
Sbjct: 1  MKRWRLWGCFKRSFLFPTKLFFLRLNSHLLHKPKGNGNALLSLYKDIESCGEYRDIQVMW 60

Query: 61 DMIHSCPPHTVHKNT------LPFSSTWRSCCFHQT 88
          DMI S   H VH+NT      L FSSTWRS CF  T
Sbjct: 61 DMIQS---HNVHENTSRSLRRLSFSSTWRSFCFQPT 93

[Close]

BLAST of Sed0025498 vs. NCBI nr
Match: KAG7033756.1 (hypothetical protein SDJN02_03481, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.8 bits (273), Expect = 1.2e-20
Identity = 53/68 (77.94%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 1  MKKWRLWGGFKRSILFPTKLFYL---SRLLHKPKGNGNGLVSLYKDIESCGEYRDIQVMW 60
          MK WRLW   KRS L PTKLF L   SR L +PKGNG GL SLYKDIESCGEYRDIQVMW
Sbjct: 1  MKGWRLWDCLKRSFLLPTKLFLLRVNSRHLVQPKGNGKGLGSLYKDIESCGEYRDIQVMW 60

Query: 61 DMIHSCPP 66
          DMIHSCPP
Sbjct: 61 DMIHSCPP 68

[Close]

BLAST of Sed0025498 vs. NCBI nr
Match: PQQ03020.1 (hypothetical protein Pyn_33068 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 104.4 bits (259), Expect = 5.1e-19
Identity = 52/86 (60.47%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MKKWRLWGGFKRSILFPTKLFYL---SRLLHKPKGNGNGLVSLYKDIESCGEYRDIQVMW 60
          M  WR W  FKRS L PTK F L   SR  +K KGNG+GLVSLYKD+ESCGEY DI+VMW
Sbjct: 14 MMGWRTWMCFKRSFLLPTKCFLLKLTSRSRNKAKGNGHGLVSLYKDMESCGEYEDIRVMW 73

Query: 61 DMIHSCPPHTVHKNTLPFSST-WRSC 83
          ++IHSCP +T   N    SS+ WR C
Sbjct: 74 EIIHSCPQNTSSSNRRKRSSSHWRFC 99

[Close]

BLAST of Sed0025498 vs. NCBI nr
Match: PQP97918.1 (hypothetical protein Pyn_28211 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 104.0 bits (258), Expect = 6.7e-19
Identity = 52/86 (60.47%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MKKWRLWGGFKRSILFPTKLFYL---SRLLHKPKGNGNGLVSLYKDIESCGEYRDIQVMW 60
          M  WR W  FKRS L PTK F L   SR  +K KGNG+GLVSLYKD+ESCGEY DI+VMW
Sbjct: 14 MMGWRTWMCFKRSFLLPTKCFLLKLTSRSRNKAKGNGHGLVSLYKDMESCGEYEDIRVMW 73

Query: 61 DMIHSCPPHTVHKNTLPFSST-WRSC 83
          ++IHSCP +T   N    SS+ WR C
Sbjct: 74 EIIHSCPQNTNSSNRRKRSSSHWRFC 99

[Close]

BLAST of Sed0025498 vs. NCBI nr
Match: CAB4315264.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-18
Identity = 51/86 (59.30%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MKKWRLWGGFKRSILFPTKLFYL---SRLLHKPKGNGNGLVSLYKDIESCGEYRDIQVMW 60
          M  WR W  FKRS L PTK F L   SR  +K KGNG+GLV+LYKD+ESCGEY DI+VMW
Sbjct: 14 MMGWRTWMCFKRSFLLPTKCFLLKLTSRSRNKAKGNGHGLVNLYKDMESCGEYEDIRVMW 73

Query: 61 DMIHSCPPHTVHKNTLPFSST-WRSC 83
          ++IHSCP  T   N+   SS+ WR C
Sbjct: 74 EIIHSCPQKTNSSNSRKRSSSHWRFC 99

[Close]

BLAST of Sed0025498 vs. ExPASy TrEMBL
Match: A0A0A0KY16 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G312850 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.0e-25
Identity = 59/75 (78.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 1  MKKWRLWGGFKRSILFPTKLFYL---SRLLHKPKGNGNGLVSLYKDIESCGEYRDIQVMW 60
          MK+WRLWG FKRS LFPTKLF+L   S LLHKPKGNGN L+SLYKDIESCGEYRDIQVMW
Sbjct: 1  MKRWRLWGCFKRSFLFPTKLFFLRLNSHLLHKPKGNGNALLSLYKDIESCGEYRDIQVMW 60

Query: 61 DMIHSCPPHTVHKNT 73
          DMI S   H VH+NT
Sbjct: 61 DMIQS---HNVHENT 72

[Close]

BLAST of Sed0025498 vs. ExPASy TrEMBL
Match: A0A314YB56 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_33068 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.5e-19
Identity = 52/86 (60.47%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MKKWRLWGGFKRSILFPTKLFYL---SRLLHKPKGNGNGLVSLYKDIESCGEYRDIQVMW 60
          M  WR W  FKRS L PTK F L   SR  +K KGNG+GLVSLYKD+ESCGEY DI+VMW
Sbjct: 14 MMGWRTWMCFKRSFLLPTKCFLLKLTSRSRNKAKGNGHGLVSLYKDMESCGEYEDIRVMW 73

Query: 61 DMIHSCPPHTVHKNTLPFSST-WRSC 83
          ++IHSCP +T   N    SS+ WR C
Sbjct: 74 EIIHSCPQNTSSSNRRKRSSSHWRFC 99

[Close]

BLAST of Sed0025498 vs. ExPASy TrEMBL
Match: A0A314XZ80 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_28211 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.3e-19
Identity = 52/86 (60.47%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MKKWRLWGGFKRSILFPTKLFYL---SRLLHKPKGNGNGLVSLYKDIESCGEYRDIQVMW 60
          M  WR W  FKRS L PTK F L   SR  +K KGNG+GLVSLYKD+ESCGEY DI+VMW
Sbjct: 14 MMGWRTWMCFKRSFLLPTKCFLLKLTSRSRNKAKGNGHGLVSLYKDMESCGEYEDIRVMW 73

Query: 61 DMIHSCPPHTVHKNTLPFSST-WRSC 83
          ++IHSCP +T   N    SS+ WR C
Sbjct: 74 EIIHSCPQNTNSSNRRKRSSSHWRFC 99

[Close]

BLAST of Sed0025498 vs. ExPASy TrEMBL
Match: A0A5E4EEZ9 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B024966 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.2e-19
Identity = 51/86 (59.30%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MKKWRLWGGFKRSILFPTKLFYL---SRLLHKPKGNGNGLVSLYKDIESCGEYRDIQVMW 60
          M  WR W  FKRS L PTK F L   SR  +K KGNG+GLV+LYKD+ESCGEY DI+VMW
Sbjct: 14 MMGWRTWMCFKRSFLLPTKCFLLQLTSRSRNKAKGNGHGLVNLYKDMESCGEYEDIRVMW 73

Query: 61 DMIHSCPPHTVHKNTLPFSST-WRSC 83
          ++IHSCP  T   N+   SS+ WR C
Sbjct: 74 EIIHSCPQKTNSSNSRKRSSSHWRFC 99

[Close]

BLAST of Sed0025498 vs. ExPASy TrEMBL
Match: A0A6J5XW64 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS39900 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.2e-19
Identity = 51/86 (59.30%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MKKWRLWGGFKRSILFPTKLFYL---SRLLHKPKGNGNGLVSLYKDIESCGEYRDIQVMW 60
          M  WR W  FKRS L PTK F L   SR  +K KGNG+GLV+LYKD+ESCGEY DI+VMW
Sbjct: 14 MMGWRTWMCFKRSFLLPTKCFLLKLTSRSRNKAKGNGHGLVNLYKDMESCGEYEDIRVMW 73

Query: 61 DMIHSCPPHTVHKNTLPFSST-WRSC 83
          ++IHSCP  T   N+   SS+ WR C
Sbjct: 74 EIIHSCPQKTNSSNSRKRSSSHWRFC 99

The following BLAST results are available for this feature:

BLAST of Sed0025498 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649569.1	1.9e-29	72.92	hypothetical protein Csa_018089 [Cucumis sativus]	[more]
KAG7033756.1	1.2e-20	77.94	hypothetical protein SDJN02_03481, partial [Cucurbita argyrosperma subsp. argyro...	[more]
PQQ03020.1	5.1e-19	60.47	hypothetical protein Pyn_33068 [Prunus yedoensis var. nudiflora]	[more]
PQP97918.1	6.7e-19	60.47	hypothetical protein Pyn_28211 [Prunus yedoensis var. nudiflora]	[more]
CAB4315264.1	1.5e-18	59.30	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Sed0025498 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025498 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY16	4.0e-25	78.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G312850 PE=4 SV=1	[more]
A0A314YB56	2.5e-19	60.47	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_330...	[more]
A0A314XZ80	3.3e-19	60.47	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_282...	[more]
A0A5E4EEZ9	7.2e-19	59.30	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B024966 PE=4 SV=1	[more]
A0A6J5XW64	7.2e-19	59.30	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS39900 PE=...	[more]

BLAST of Sed0025498 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 1..83
None	No IPR available	PANTHER	PTHR33181:SF15	SUBFAMILY NOT NAMED	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025498.1	Sed0025498.1	mRNA