Sed0025485 (gene) Chayote v1

Overview
NameSed0025485
Typegene
OrganismSechium edule (Chayote v1)
Descriptionglycine-rich RNA-binding protein GRP1A-like
LocationLG07: 37620060 .. 37626334 (-)
RNA-Seq ExpressionSed0025485
SyntenySed0025485
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACTCCAACCTACACCACTTACTATAAAATAAATTAAACACCAACATATATAACACACATTTCTAAATAGAAAAACCTATTTCTTCAAAATATGGGAAGAACAAGAAGATCACAGATCATGGGATTTATTTTCTTTCTTTTTTGTTTTTCCATGGCTACTACTTCATCTTCTCTCCAACAAATTTCCACAACAGGTCAGTTTTCTAATTTTCTCACCATATTTACAAAATTCTCACCCTGTTTTTTTTCTTTTTTTCTCTCTTTAGCTTAGACTAAGATTTTGGATGTCACCCTTCCAAATGGTGCTTCTTTTGTTTACCAATTTCAGAATAGATTATTATTTTTTTCAATTTTAATGGATTAGATTGATGATAAACTCTATCTGTTTTGAAGCATCTTTGCTTTTTTGTCGATGTGAGATCCTAAAACTTCTAATTAAAATAATAATGAAAGAAAAAAAATCTACCAAACAGATAGAAAAGATCATATGCTGTTTGGTGTATATGTTTTTTAAATTTTATTTGATAATATTTAGGGTGTGGATTTAAATATATAACTTAGCTATGCTGTTGTTGGGTGCTGTTTTGGTTTTCTTCCAATTTGTGTTCATATCCTTTTATTAAAAAAAAAAAAACTGCAATTTTTAGGTAAAAAGTAGCAAATAAAGTAAAGCATATAAGACAAAATGGAATAACGAAACCGACAAAGAAGTGAAATAAAGTGTGCGTCTGATAAATAGTATTAAAAGAAAATTAGAAATTGAAAATCGGACCAATAGCTCGACGATGTACACTTGGGGATTTGGAATATCGATTTGATTATGATAGAAGAAAGATTATAATAAATTGTGAGTTATTATAAGTGATATTTGAGGGACAAGTTATTATAAGATAGATTATGATAAATGGTTATGTGACAAGTAATATATGTAAAGTTCAGATAAAGACACGTAGGTTTAGGTAACTATCGATTATAATAAATAGTAGAGCAAACATTGGTTGGGTTATTATAATAAATCCAACCGTTTACATAAAACGGGGCCAAACACACCCTTAATGATTAAAAAGTGTTGGGTTTGAGTCGCTCCACCCTCAAATTATTGTGATTAAAAAAAAAACTTTTAAAGTTTATTCTTCAAAAAGTTAAAATTTAGTGATGTGTAGTCTATATAATTTGATAAAACATAAAAAATAGTACTCACTATTCCTAATTGCAACTAATTAAGGTCTCATTTGATAACCATTTTGTTTTTCATTTTTTGTTTATGAAATTTGAGCCTACAACAACTGCATTACTATACTTTTTTCCTTATTTGGATATCTACATCTTATCTATATTTTAATAAACAAAACCAAAATTTGTAAACAAAAAAAGTAGCTTCCAAAAAATTGTTTATGTTTTTGAAATTTGGTTAGAATTCTCCTACTTTCTTAAGGAAAAATGGATTACATTGTAAGAAAGGTGGAGGTAGGAAATTTGAATAGAAACAGACTTAACTTTCATTAACAAAAACAAAATGGTTATCAAAGAGGACTTAAATATGTGAAACTTTATAATTTATGTGTAAATAATAATTCTTTTGTTTAGTTAATTTCTCATAATTTTATCATTAACACATGAATAACTAACTTTCAAATACTCAATTTATTATCAATTATGACTATTTTGGGTTTTTTATCAAACTATATAGACTAAGTTCTAGTTTTTAAAATTATAAGAAATAAATAAATCGTAAGAGGCTGTTTGTTTAGCCTATTTAGGTAGGATTTAATTTTAGGATCTATTAATTCCTTCTTGAAAACCTATATTTAAATGAGTTTTTATTAATTCCTCATTTTTACTCTTAATTTATTTCTACCATATATCATTTCCATTCTTAATTTATTTCTACCATATATCATTTCCATTCTTCAGTACTATTATTGTTTTTCTCTAGTGTAAGTGCTTGCATCAATAATTCACTCACATTGAGGATAAAATTTCATGTGGGTATGTATAAACAACAAATTAGTATGATTGAAGATCCGTATAAAATAGTAATGGGAAAGAGAAAAAGAATAAAAAGATAAATAGAAGAACATAGCTGGTTGTGGAGTGGGGGCTAATAAAATATATAATTAAAAAAAAAAAAGTTGAATGCCCATGTGGAAGTGGGGCCTTGCTTTTCCACTTACTTTACCTTTTTGGAAGCTAAAATTTCAAATCAAATCTGCTACTGACCAACTGATCAAATAACCAGCTGATCTAATTTGTCAAGATATTCATAATCTCTTATTTTGTTTGTATTTAAATGGTAATATTAATAAGGTTAAAGTATTAAATATACCCTCAAACTATTACATTTTTTTTTCAAATTTATCCCTTAACTTTGAAAAGTTTCAAAAATACCCCTAAATTTTATAAAATGTTTCAAAAATACCCCTATCGTTAATTTTGGATGGAAACTGTTAAAGTTTTATTTAAAAAATACTCTCAAACTTTAAAAAGTTTCGAAAATACCCTTAGTCTTACAAAAAAACATAAATTTAAATAATTTAGCTTCTCAAATATCTGAATTTAATGTATCAAATTTTGGCAGCATGAAAAAATATTTTTTTTATGTCTCATAAAGGCTTTCAAATTAAGATTTATTGTTTATTATTACAACTAAAATTTATAATTCATTTATAACCTTGTAATTTATTTAAATTTTTGAGTTTAATTTATCAACTACAAATATAACATTAAATTTGAAAACTTAAAACACGTTACAATGAACAATAAAATATTAATTAGTTTAAGTTAACATTTAATGATCACTTTTTAATAATTTTATGCATCTAAAAAAAAGATAAAATGAGTGAAATATATTAAGAAATTAATTTACTAAGACCCCGTTTGATAACCATTTTGTTTTTTGTTTATGAAATTTAAGCCTATTTCTATTCAAATTTTCTACCATGTGCTCCATCTTTCCTACAATATATCCATCTTTCCTTAAGAAAGTAGGAGAATACTAACCAAATTTTAAAAACATAAACAAGTTTTTGGAAGCTACTTTTTTTTGTTTACAAATTTTGGTTTTGTTTATTAAAATATAGGTAAGATGTAGATATCCAAATAAAGAAAAATGTATAGTAAGATAATTGTTGTAGGCTTAAATTTCATAAACAAAAAACCAAAAATAAAATGGTTATCAAACGGAACCTAAACAATTCAATTAATTAAATAACCATTAATATTGACATAAAGTATAATAAGTTAAAAATATAAAGATAAACAAAAATGCAATTAAACATGTAGCAGTTAGGGGGGTGTACATAGTCCGACTGGATTAAAGGTATTTTTTGGATCAACCACACTTTTCGGGTTGGTCAAGCCCCCAACCCTTCCAACCCTATGCATAGAATAATCCAACCCAACCCTAATCTCAAGTTGTTATAATCCCATTCATATATAAAAAAGAACTCAATTCATATCCCATAAATATGTAAACAATATATATGTGTATGTATATATATATGTATGATACTTACAAAGTCTAAATTACAATATCTTATTAACATATGTTCCTTATCAATATGCTATGAACTCATATTATTAATTAATTTACATACATTTTATTTATTTGTTTATATATTTATATAGAAAAAATAAGATTAATACAACTAAAAAACTCAACCCAACCTAAAAATATAAGGTTGAGTTTGTTTAAGGATATTACATCGAAAAGAGTGGAGACCTCATGATAATGTAAAAGAAATATGGGTTACTCCACCTATAATTAATTGGTTTTGAGGTGGAACCTTATATAATCTAATATAACATCAAGACCCATTAAACCCAAACAGGTATTCGATGGGCATGGGCAGAACCCATATACCTACAACTAAATTTAAAAACTTTTATGAGTCATCAAAAATTTATAGTTTACCTTAGTAAAGCTTAATTATATCAATTTTATGTTTTTTTAAAGATTAAGAGTATTTTTGAAACTTTTTAAAGTTCAGGAGCATTTTTACAATAAAACTTTAACTATTTCCATCCAAAATTAGCGGTAAGGATATTTTTGAAACATTTTGGTAAGTTTGACAAAAATGTGAACCTATTTACTAAAGACAAAGTGATTACATGATTACTTTTTTCGAGTTACTATTATAATAAATTTTTAAAAATAATTCGTTTATAATTCTGCCTATTTTTAAAAAAAATCTGTATTTACATTTTTTTATTAAATCGGATCTCAATTTCATTTTTATTGGACACCCGTTTGGGCTTAATGGGCTTTGATACCATGTGAAATAGTGTGGACATCCATCTCAAAACCAATTGGTGATGAGAGGAGTAGTCCACCTACCTTTTAAACACTTAGAGATATCCTCTCCATATCAATGTGGGATTCTCAATAGTTAGAAAGGAATAAAAAAAATCGAATGGATCATTGGTGCGATTGGTTATCTGGTTTGGTGTTAATTTATTTCTATTCCACGACTACAGATTTGATCTGGTTTAGTGTTAATTTATTTTTATTCCACACCTACAGATTTGATCATTGGAATCAGTATTTGTAATCCTCTTCCCCCAATTTATACTTAAAAAAAAGGAACAAAAAGGATTATGAAAATAAATATAGCATCTACTTAAAAAAAACAAAATAAATCTCATTATTCATTTGGGTAACGACAATTTTGACCTTACAAAGCAGTTTATTCTTCGTAAAATATCAAAAGAATCCAACTTAAGTACACTTTTTAATAAAATGAGAAATATAAGTCAATTATTCTATTTTAATTCAAGAATAATTTCGGTGGTCAAACACGTAACTTCTTTATTACGGGAGTATATGAGATGCTATTAGAACTCATATTCTTTTAGAAAATATAAATTAATTTTAATATAGTGGATAAGAAACTTATTACCGAAATAAAAATATATGCACCACCATATGAAAAAAAAATTTAAAATTAAAATGTCAATAAAAGTAGAACTCTAATATTATCTTGTACAACTCAGTAAGTATGAGATTACAAATTCGAAACCCTCCTTTTTCAATATTATTGTATTAAAAAAATGAAAATTAATTAATTTTTTTTAAAAAAAAACTCTAGAGAAATCAAATCAAAATGAATTTGGGTGAAAATCGTTAGTGAATAAAAAAAAAAGTAAAATATCATTTTAGTGTACGAACTTATTTTTTAGCCCATATTTGTACGTACTACTGTTTAGATTTGTATGGTGTGCGTTGGGGTTGGTTGTATCAGTTTTGTTTTATTAAAAAAACCCGTGATAATTTTATTTGTTTGGTGGTAGTTCAGTTCACTATCATAGTTATTGGTTCAACTATCATAGTTACTGGTTCAATCCTGAGTATCGTTGTTTGACTCACAACCAAAAATTTCGGTATTCTTTTGTTTTATTTTGGCTTGATAATATGTGTGGTGAGGAAATCAAACTTCTAACCTTGTACAAGCTATCAATTGAATTATGCTTGCATTCTTCTGTGGTGAAAACCTCTCTCTCTATATGTATTTTTAATAATGTTGACATGGGAAAACAATAACAATAATTATAAACGAAATTTGTTATGCCCCATTCCTAAACCAGCTTGTATATGCATGCAGAATCTAGTTACCAACAGCAAACTAACAAAGAAAAACATGGCAAAGATGATGGGGTTACCGACCAGATTGACAAAAGATACAGTGCGAGTGCAGTCGCAGTTTCGAATAGGTTCAGTCATTCGGGAAGCGGAGGTGGGAGAGATGGCGGCGGCGGAAGTAGACCTCATGCAGGAGGAGGTACCGCCATAATCCCTATCTATGCAGCTGGTTCGGCACAAGCACGTCGCCAACAGGGTCGACGGCGCAATGCGGGAACTCGCCATGAGAATAACATGGGACTTTTGGTAGCTGGAGTTTTAGGTGTCATTACACATATGTACAGAGTTTTCTAATTTGTAGATGAGAGCTGTAACAAACGTATGCAACTCTGCCATGGCTTCTTGAATCCAAAAATGAGTTGTAATTTCTTGTACTTAAACTTGTAATAATACTCTGCCATGGCTTCTTCATAGGGGATGTACAAAATGTTTATTTTGTTAAGTTTTATACTGGACATTTAATTTGATTTTACCTATCTTTTATTTTAAGAGAAGTGATTTTTACTTCCAAATGCATAAAAATTGAAATAAATGTAATTTGAATGCAATAGAAATTTAAAAGTATGCACAAACTTGCCATGGTTGAAAGCATGTTATCAACCCTCACAAAACAAAGAACTAAACGAAGAATATTTG

mRNA sequence

CCACTCCAACCTACACCACTTACTATAAAATAAATTAAACACCAACATATATAACACACATTTCTAAATAGAAAAACCTATTTCTTCAAAATATGGGAAGAACAAGAAGATCACAGATCATGGGATTTATTTTCTTTCTTTTTTGTTTTTCCATGGCTACTACTTCATCTTCTCTCCAACAAATTTCCACAACAGAATCTAGTTACCAACAGCAAACTAACAAAGAAAAACATGGCAAAGATGATGGGGTTACCGACCAGATTGACAAAAGATACAGTGCGAGTGCAGTCGCAGTTTCGAATAGGTTCAGTCATTCGGGAAGCGGAGGTGGGAGAGATGGCGGCGGCGGAAGTAGACCTCATGCAGGAGGAGGTACCGCCATAATCCCTATCTATGCAGCTGGTTCGGCACAAGCACGTCGCCAACAGGGTCGACGGCGCAATGCGGGAACTCGCCATGAGAATAACATGGGACTTTTGGTAGCTGGAGTTTTAGGTGTCATTACACATATGTACAGAGTTTTCTAATTTGTAGATGAGAGCTGTAACAAACGTATGCAACTCTGCCATGGCTTCTTGAATCCAAAAATGAGTTGTAATTTCTTGTACTTAAACTTGTAATAATACTCTGCCATGGCTTCTTCATAGGGGATGTACAAAATGTTTATTTTGTTAAGTTTTATACTGGACATTTAATTTGATTTTACCTATCTTTTATTTTAAGAGAAGTGATTTTTACTTCCAAATGCATAAAAATTGAAATAAATGTAATTTGAATGCAATAGAAATTTAAAAGTATGCACAAACTTGCCATGGTTGAAAGCATGTTATCAACCCTCACAAAACAAAGAACTAAACGAAGAATATTTG

Coding sequence (CDS)

ATGGGAAGAACAAGAAGATCACAGATCATGGGATTTATTTTCTTTCTTTTTTGTTTTTCCATGGCTACTACTTCATCTTCTCTCCAACAAATTTCCACAACAGAATCTAGTTACCAACAGCAAACTAACAAAGAAAAACATGGCAAAGATGATGGGGTTACCGACCAGATTGACAAAAGATACAGTGCGAGTGCAGTCGCAGTTTCGAATAGGTTCAGTCATTCGGGAAGCGGAGGTGGGAGAGATGGCGGCGGCGGAAGTAGACCTCATGCAGGAGGAGGTACCGCCATAATCCCTATCTATGCAGCTGGTTCGGCACAAGCACGTCGCCAACAGGGTCGACGGCGCAATGCGGGAACTCGCCATGAGAATAACATGGGACTTTTGGTAGCTGGAGTTTTAGGTGTCATTACACATATGTACAGAGTTTTCTAA

Protein sequence

MGRTRRSQIMGFIFFLFCFSMATTSSSLQQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSGGGRDGGGGSRPHAGGGTAIIPIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF
Homology
[Close]
BLAST of Sed0025485 vs. NCBI nr
Match: XP_038892711.1 (uncharacterized protein LOC120081693 [Benincasa hispida])

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-29
Identity = 85/146 (58.22%), Postives = 103/146 (70.55%), Query Frame = 0 

Query: 1   MGRTRRSQIMGFIFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDK 60
           MGR RR ++   I  L C +MA +S++L QQI  TES+YQQ+T  EK  K DG+T+QI +
Sbjct: 1   MGRRRRVRL---ILLLLCSTMAISSAALQQQIFPTESNYQQKTYTEKRSK-DGITNQIAR 60

Query: 61  RYSASAVAVSNRFSH-SGSGGGRDGGGGSRPHAGGGTAIIPIYAAGSAQARRQQGRRRNA 120
           RYSA+ + VSN     S   GG + GGGSRPH GGGTA+IP+YAAGSAQA  +QGR  NA
Sbjct: 61  RYSATEITVSNGIGQGSAVAGGGENGGGSRPHNGGGTAVIPVYAAGSAQAHHRQGRPHNA 120

Query: 121 GTRHENNMGLLVAGVLGVITHMYRVF 145
           G RHENN GLLVA VL  I H+Y VF
Sbjct: 121 GNRHENNRGLLVAAVLAAIAHLYGVF 142

[Close]
BLAST of Sed0025485 vs. NCBI nr
Match: XP_023517064.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo] >KAG7032020.1 hypothetical protein SDJN02_06062 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-28
Identity = 83/146 (56.85%), Postives = 100/146 (68.49%), Query Frame = 0 

Query: 1   MGRTRRSQIMGFIFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDK 60
           MGR R   +M   F LFC ++   SS+L QQI  TES+Y Q+TN EKHGK DGVT++I  
Sbjct: 1   MGRRRELTLM---FLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGK-DGVTNRISS 60

Query: 61  RYSASAVAVSNRFSHSGSGGGRDGGGGSRPHA-GGGTAIIPIYAAGSAQARRQQGRRRNA 120
            YSA A+ VS    H  + GG + GGG RP A GGG A+IP+YAAGSAQA  +QGR RNA
Sbjct: 61  IYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNA 120

Query: 121 GTRHENNMGLLVAGVLGVITHMYRVF 145
           G  +ENNMGLLVA VL  I H++ VF
Sbjct: 121 GNHYENNMGLLVASVLAAIAHLHLVF 142

[Close]
BLAST of Sed0025485 vs. NCBI nr
Match: XP_022957462.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata])

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-28
Identity = 83/146 (56.85%), Postives = 100/146 (68.49%), Query Frame = 0 

Query: 1   MGRTRRSQIMGFIFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDK 60
           MGR R   +M   F LFC ++   SS+L QQI  TES+Y Q+TN EKHGK DGVT++I  
Sbjct: 1   MGRRRELTLM---FLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGK-DGVTNRISS 60

Query: 61  RYSASAVAVSNRFSHSGSGGGRDGGGGSRPHA-GGGTAIIPIYAAGSAQARRQQGRRRNA 120
            YSA A+ VS    H  + GG + GGG RP A GGG A+IP+YAAGSAQA  +QGR RNA
Sbjct: 61  IYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNA 120

Query: 121 GTRHENNMGLLVAGVLGVITHMYRVF 145
           G  +ENNMGLLVA VL  I H++ VF
Sbjct: 121 GNHYENNMGLLVASVLAAIVHLHLVF 142

[Close]
BLAST of Sed0025485 vs. NCBI nr
Match: XP_011655831.2 (glycine-rich protein DOT1 [Cucumis sativus] >KAE8648819.1 hypothetical protein Csa_009069 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 5.9e-28
Identity = 89/162 (54.94%), Postives = 110/162 (67.90%), Query Frame = 0 

Query: 1   MGRTRRSQIMGFIFFLFCFSMATTSSSLQQ---ISTTESSYQQQTNKEKHGKDDGVTDQI 60
           MGR R  ++   IF LFC ++A +S++LQQ    + TES+YQQ+T  +KHGK  GVT+QI
Sbjct: 1   MGRRRGIRL---IFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGK-YGVTNQI 60

Query: 61  DKRYSASAVAVSN---RFSHSGSGGGRDGG------------GGSRPHAGGGTAIIPIYA 120
           ++RYS+SA+ VSN   R S SGSG G  GG            GGSRP  GGGTA+IP+YA
Sbjct: 61  NRRYSSSAITVSNVIRRGSGSGSGSGGGGGSGSAAAAGGGENGGSRPRTGGGTAVIPVYA 120

Query: 121 AGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF 145
           AGSAQA  +QGR  NAG  +ENNMGLLVA VL  I H+ RVF
Sbjct: 121 AGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 158

[Close]
BLAST of Sed0025485 vs. NCBI nr
Match: KAG6601227.1 (hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.5 bits (332), Expect = 2.9e-27
Identity = 78/134 (58.21%), Postives = 95/134 (70.90%), Query Frame = 0 

Query: 13  IFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNR 72
           +F LFC ++   SS+L QQI  TES+Y Q+TN EKHGK DGVT++I   YSA A+ VS  
Sbjct: 1   MFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGK-DGVTNRISSIYSARAITVSQG 60

Query: 73  FSHSGSGGGRDGGGGSRPHA-GGGTAIIPIYAAGSAQARRQQGRRRNAGTRHENNMGLLV 132
             H  + GG + GGG RP A GGG A+IP+YAAGSAQA  +QGR RNAG  +ENNMGLLV
Sbjct: 61  IGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLV 120

Query: 133 AGVLGVITHMYRVF 145
           A VL  I H++ VF
Sbjct: 121 ASVLAAIAHLHLVF 133

[Close]
BLAST of Sed0025485 vs. ExPASy TrEMBL
Match: A0A6J1GZ71 (glycine-rich RNA-binding protein GRP1A-like OS=Cucurbita moschata OX=3662 GN=LOC111458855 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 9.8e-29
Identity = 83/146 (56.85%), Postives = 100/146 (68.49%), Query Frame = 0 

Query: 1   MGRTRRSQIMGFIFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDK 60
           MGR R   +M   F LFC ++   SS+L QQI  TES+Y Q+TN EKHGK DGVT++I  
Sbjct: 1   MGRRRELTLM---FLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGK-DGVTNRISS 60

Query: 61  RYSASAVAVSNRFSHSGSGGGRDGGGGSRPHA-GGGTAIIPIYAAGSAQARRQQGRRRNA 120
            YSA A+ VS    H  + GG + GGG RP A GGG A+IP+YAAGSAQA  +QGR RNA
Sbjct: 61  IYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNA 120

Query: 121 GTRHENNMGLLVAGVLGVITHMYRVF 145
           G  +ENNMGLLVA VL  I H++ VF
Sbjct: 121 GNHYENNMGLLVASVLAAIVHLHLVF 142

[Close]
BLAST of Sed0025485 vs. ExPASy TrEMBL
Match: A0A0A0KUR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 8.3e-28
Identity = 89/158 (56.33%), Postives = 110/158 (69.62%), Query Frame = 0 

Query: 1   MGRTRRSQIMGFIFFLFCFSMATTSSSLQQ---ISTTESSYQQQTNKEKHGKDDGVTDQI 60
           MGR R  ++   IF LFC ++A +S++LQQ    + TES+YQQ+T  +KHGK  GVT+QI
Sbjct: 1   MGRRRGIRL---IFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGK-YGVTNQI 60

Query: 61  DKRYSASAVAVSN---RFSHSGSGGG------RDGG--GGSRPHAGGGTAIIPIYAAGSA 120
           ++RYS+SA+ VSN   R S SG GGG        GG  GGSRP  GGGTA+IP+YAAGSA
Sbjct: 61  NRRYSSSAITVSNVIRRGSGSGGGGGSGSAAAAGGGENGGSRPRTGGGTAVIPVYAAGSA 120

Query: 121 QARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF 145
           QA  +QGR  NAG  +ENNMGLLVA VL  I H+ RVF
Sbjct: 121 QAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 154

[Close]
BLAST of Sed0025485 vs. ExPASy TrEMBL
Match: A0A5A7SUI0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001940 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 0 

Query: 13  IFFLFCFSMATTSSSLQQ---ISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVS 72
           IF LFC ++A +S++LQQ    + TES+YQQ+T   K GK  GVT+QI +RYSASA+ VS
Sbjct: 9   IFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTRKQGK-YGVTNQISRRYSASAITVS 68

Query: 73  NRFSHSGSG----GGRDGGGGSRPHAGGGTAIIPIYAAGSAQARRQQGRRRNAGTRHENN 132
           N    +  G    GG + GGGSRPH GGGTA+IP+YAAGSAQAR +QGR  NAG  +ENN
Sbjct: 69  NVIRRANGGAAAAGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQGRPHNAGNGYENN 128

Query: 133 MGLLVAGVLGVITHMYRVF 145
            GLLVA VL  I H+ RV+
Sbjct: 129 TGLLVAAVLAAIAHLCRVY 146

[Close]
BLAST of Sed0025485 vs. ExPASy TrEMBL
Match: A0A1S3BFU8 (uncharacterized protein LOC103489382 OS=Cucumis melo OX=3656 GN=LOC103489382 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 0 

Query: 13  IFFLFCFSMATTSSSLQQ---ISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVS 72
           IF LFC ++A +S++LQQ    + TES+YQQ+T   K GK  GVT+QI +RYSASA+ VS
Sbjct: 9   IFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTRKQGK-YGVTNQISRRYSASAITVS 68

Query: 73  NRFSHSGSG----GGRDGGGGSRPHAGGGTAIIPIYAAGSAQARRQQGRRRNAGTRHENN 132
           N    +  G    GG + GGGSRPH GGGTA+IP+YAAGSAQAR +QGR  NAG  +ENN
Sbjct: 69  NVIRRANGGAAAAGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQGRPHNAGNGYENN 128

Query: 133 MGLLVAGVLGVITHMYRVF 145
            GLLVA VL  I H+ RV+
Sbjct: 129 TGLLVAAVLAAIAHLCRVY 146

[Close]
BLAST of Sed0025485 vs. ExPASy TrEMBL
Match: A0A6J1JB47 (uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.1e-27
Identity = 80/146 (54.79%), Postives = 99/146 (67.81%), Query Frame = 0 

Query: 1   MGRTRRSQIMGFIFFLFCFSM-ATTSSSLQQISTTESSYQQQTNKEKHGKDDGVTDQIDK 60
           MGR R   +M   F LFC ++ A +S+  QQI  TE +Y Q+TN EKHG+ DGVT++I  
Sbjct: 1   MGRRRELSLM---FLLFCSTIPAISSARQQQILPTEPNYHQKTNAEKHGQ-DGVTNRISS 60

Query: 61  RYSASAVAVSNRFSHSGSGGGRDGGGGSRPHA-GGGTAIIPIYAAGSAQARRQQGRRRNA 120
            YSA A+ VS    H  + GG + GGG RP A GGG A+IP+YAAGSAQA  +QGR RNA
Sbjct: 61  IYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRPRNA 120

Query: 121 GTRHENNMGLLVAGVLGVITHMYRVF 145
           G  +ENNMGLLVA VL  I H++ VF
Sbjct: 121 GNHYENNMGLLVASVLAAIAHLHLVF 142

The following BLAST results are available for this feature:
BLAST of Sed0025485 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038892711.14.1e-2958.22uncharacterized protein LOC120081693 [Benincasa hispida][more]
XP_023517064.12.0e-2856.85glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo] >KAG703... [more]
XP_022957462.12.0e-2856.85glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata][more]
XP_011655831.25.9e-2854.94glycine-rich protein DOT1 [Cucumis sativus] >KAE8648819.1 hypothetical protein C... [more]
KAG6601227.12.9e-2758.21hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Sed0025485 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0025485 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GZ719.8e-2956.85glycine-rich RNA-binding protein GRP1A-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A0A0KUR68.3e-2856.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1[more]
A0A5A7SUI01.8e-2757.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BFU81.8e-2757.55uncharacterized protein LOC103489382 OS=Cucumis melo OX=3656 GN=LOC103489382 PE=... [more]
A0A6J1JB474.1e-2754.79uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159... [more]
BLAST of Sed0025485 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..57
NoneNo IPR availablePANTHERPTHR36245GLYCINE-RICH PROTEIN DOT1-LIKEcoord: 5..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0025485.1Sed0025485.1mRNA