Sed0025479 (gene) Chayote v1

Overview
NameSed0025479
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTransducin/WD40 repeat-like superfamily protein
LocationLG10: 8431750 .. 8432045 (-)
RNA-Seq ExpressionSed0025479
SyntenySed0025479
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACGGCAAGGCTCCGTCGCCGGTGACTCTGCTGGAGCGCCTCCGTGAGGCCGTGTTTCGTTTCATAATGCTCTGTGCTTTTTCAAAGGCCTCAAATCACCATCGCAGCCATCCCGCCGGAGCTGGTTTCCCGGCCGATGATGACGTCATGAGGCGGCGGCACTCGTACCAAAACGCCGACCACCACCACAGCGAGGCCGTCGCCGATTGCATCGAGTTTATTAAGAAGAAGGCGTATTCCGACCACGAGGTGATGTGGATCGACGGACGCCAATGCTGACGTGGCCACGG

mRNA sequence

ATGAAGAACGGCAAGGCTCCGTCGCCGGTGACTCTGCTGGAGCGCCTCCGTGAGGCCGTGTTTCGTTTCATAATGCTCTGTGCTTTTTCAAAGGCCTCAAATCACCATCGCAGCCATCCCGCCGGAGCTGGTTTCCCGGCCGATGATGACGTCATGAGGCGGCGGCACTCGTACCAAAACGCCGACCACCACCACAGCGAGGCCGTCGCCGATTGCATCGAGTTTATTAAGAAGAAGGCGTATTCCGACCACGAGGTGATGTGGATCGACGGACGCCAATGCTGACGTGGCCACGG

Coding sequence (CDS)

ATGAAGAACGGCAAGGCTCCGTCGCCGGTGACTCTGCTGGAGCGCCTCCGTGAGGCCGTGTTTCGTTTCATAATGCTCTGTGCTTTTTCAAAGGCCTCAAATCACCATCGCAGCCATCCCGCCGGAGCTGGTTTCCCGGCCGATGATGACGTCATGAGGCGGCGGCACTCGTACCAAAACGCCGACCACCACCACAGCGAGGCCGTCGCCGATTGCATCGAGTTTATTAAGAAGAAGGCGTATTCCGACCACGAGGTGATGTGGATCGACGGACGCCAATGCTGA

Protein sequence

MKNGKAPSPVTLLERLREAVFRFIMLCAFSKASNHHRSHPAGAGFPADDDVMRRRHSYQNADHHHSEAVADCIEFIKKKAYSDHEVMWIDGRQC
Homology
BLAST of Sed0025479 vs. NCBI nr
Match: KAA0025678.1 (Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK12553.1 Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-26
Identity = 69/92 (75.00%), Postives = 74/92 (80.43%), Query Frame = 0

Query: 2   KNGKAPSPVTLLERLREAVFRFIMLCAFSKASNHHRSHPAGAGFPADDDVMRRRHSYQNA 61
           KN K PS +TL ERLREAVFRFIMLCA SKA+NHH +  AGA F  DD V+RRRHSY N 
Sbjct: 30  KNNKPPSAMTLFERLREAVFRFIMLCALSKATNHHPT--AGAAF-QDDVVVRRRHSYPNV 89

Query: 62  DHHHSEAVADCIEFIKKKAYS-DHEVMWIDGR 93
           DHHHSEAVADCIEFIK KAYS DHEV+ I GR
Sbjct: 90  DHHHSEAVADCIEFIKMKAYSDDHEVILIGGR 118

BLAST of Sed0025479 vs. NCBI nr
Match: KAG6603914.1 (hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.9 bits (320), Expect = 4.7e-26
Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 0

Query: 1   MKNGKAPSPVTLLERLREAVFRFIMLCAFSKASNHHRSHPAGAGFPADDDVMRRRHSYQN 60
           MKN KAP  +TL ERLREAVFRFIMLCA SKA+NH   H AGA F   DDV+RRR SYQN
Sbjct: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNH---HSAGAVF--QDDVVRRRQSYQN 78

Query: 61  ADHHHSEAVADCIEFIKKKAYSDHEVM 88
            DHHHSEAVADCIEFIKKKAYSD +++
Sbjct: 79  GDHHHSEAVADCIEFIKKKAYSDDQII 100

BLAST of Sed0025479 vs. NCBI nr
Match: KGN49339.2 (hypothetical protein Csa_003207 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-25
Identity = 65/86 (75.58%), Postives = 70/86 (81.40%), Query Frame = 0

Query: 2   KNGKAPSPVTLLERLREAVFRFIMLCAFSKASNHHRSHPAGAGFPADDDVMRRRHSYQNA 61
           K  K PSP+TL ERLREAVFRFIMLCA SKA+NHH +  AGA F  DD V+RRRHSY N 
Sbjct: 30  KTTKPPSPMTLFERLREAVFRFIMLCALSKATNHHPA--AGATF-QDDVVVRRRHSYPNV 89

Query: 62  DHHHSEAVADCIEFIKKKAYSDHEVM 88
           DHHHSEAVADCIEFIK KAYSD EV+
Sbjct: 90  DHHHSEAVADCIEFIKMKAYSDDEVI 112

BLAST of Sed0025479 vs. NCBI nr
Match: KAF9682207.1 (hypothetical protein SADUNF_Sadunf05G0084600 [Salix dunnii])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 8   SPVTLLERLREAVFRFIMLCAFSKASNHHRSHPAGAGFPADDDVMRRRHSYQNADHHHSE 67
           SP+TLLER R+AVFR +ML A SKA     +H A AG   D   M++R SY  AD HHSE
Sbjct: 34  SPMTLLERFRQAVFRLMMLSALSKA-----THNAAAGSSPDHHAMKKRSSYYPADPHHSE 93

Query: 68  AVADCIEFIKKKAYSDHE 86
           AVADCIEFIKK + SDH+
Sbjct: 94  AVADCIEFIKKSSLSDHQ 106

BLAST of Sed0025479 vs. NCBI nr
Match: KAG8478177.1 (hypothetical protein CXB51_027971 [Gossypium anomalum])

HSP 1 Score: 87.8 bits (216), Expect = 5.4e-14
Identity = 49/79 (62.03%), Postives = 55/79 (69.62%), Query Frame = 0

Query: 2   KNGKAPSPVTLLERLREAVFRFIMLCAFSKASNHHRSHPAGAGFPADDDVMRRRHSYQNA 61
           KN K  SPVTLL+R REAVFR IML A SKAS+HHR H +     +   V RR   Y  A
Sbjct: 54  KNNKRLSPVTLLDRFREAVFRLIMLSALSKASHHHRHHQS-----SSSTVPRR---YYPA 113

Query: 62  DHHHSEAVADCIEFIKKKA 81
           D HH+EAVADCIEFIKKK+
Sbjct: 114 DAHHNEAVADCIEFIKKKS 124

BLAST of Sed0025479 vs. ExPASy TrEMBL
Match: A0A5A7SHP0 (Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001350 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.0e-27
Identity = 69/92 (75.00%), Postives = 74/92 (80.43%), Query Frame = 0

Query: 2   KNGKAPSPVTLLERLREAVFRFIMLCAFSKASNHHRSHPAGAGFPADDDVMRRRHSYQNA 61
           KN K PS +TL ERLREAVFRFIMLCA SKA+NHH +  AGA F  DD V+RRRHSY N 
Sbjct: 30  KNNKPPSAMTLFERLREAVFRFIMLCALSKATNHHPT--AGAAF-QDDVVVRRRHSYPNV 89

Query: 62  DHHHSEAVADCIEFIKKKAYS-DHEVMWIDGR 93
           DHHHSEAVADCIEFIK KAYS DHEV+ I GR
Sbjct: 90  DHHHSEAVADCIEFIKMKAYSDDHEVILIGGR 118

BLAST of Sed0025479 vs. ExPASy TrEMBL
Match: A0A0A0KGN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 65/86 (75.58%), Postives = 70/86 (81.40%), Query Frame = 0

Query: 2   KNGKAPSPVTLLERLREAVFRFIMLCAFSKASNHHRSHPAGAGFPADDDVMRRRHSYQNA 61
           K  K PSP+TL ERLREAVFRFIMLCA SKA+NHH +  AGA F  DD V+RRRHSY N 
Sbjct: 30  KTTKPPSPMTLFERLREAVFRFIMLCALSKATNHHPA--AGATF-QDDVVVRRRHSYPNV 89

Query: 62  DHHHSEAVADCIEFIKKKAYSDHEVM 88
           DHHHSEAVADCIEFIK KAYSD EV+
Sbjct: 90  DHHHSEAVADCIEFIKMKAYSDDEVI 112

BLAST of Sed0025479 vs. ExPASy TrEMBL
Match: A0A7J8XH78 (Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_014215 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.6e-14
Identity = 49/79 (62.03%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 2   KNGKAPSPVTLLERLREAVFRFIMLCAFSKASNHHRSHPAGAGFPADDDVMRRRHSYQNA 61
           KN K  SPVTLLER REAVFR IML A SKAS+HH  H       +   V RR   Y  A
Sbjct: 27  KNSKRLSPVTLLERFREAVFRLIMLSALSKASHHHHHHHHHHHQSSSSTVPRR---YYPA 86

Query: 62  DHHHSEAVADCIEFIKKKA 81
           D HH+EAVADCIEFIKKK+
Sbjct: 87  DAHHNEAVADCIEFIKKKS 102

BLAST of Sed0025479 vs. ExPASy TrEMBL
Match: A0A5D2NDI0 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G199100v1 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.4e-14
Identity = 49/79 (62.03%), Postives = 54/79 (68.35%), Query Frame = 0

Query: 2   KNGKAPSPVTLLERLREAVFRFIMLCAFSKASNHHRSHPAGAGFPADDDVMRRRHSYQNA 61
           KN K  SPVTLLER REAVFR IML A SKAS+HH  H +     +   V RR   Y  A
Sbjct: 54  KNNKRLSPVTLLERFREAVFRLIMLSALSKASHHHHHHQS-----SSSTVPRR---YYPA 113

Query: 62  DHHHSEAVADCIEFIKKKA 81
           D HH+EAVADCIEFIKKK+
Sbjct: 114 DAHHNEAVADCIEFIKKKS 124

BLAST of Sed0025479 vs. ExPASy TrEMBL
Match: A0A1U8K2Y4 (uncharacterized protein LOC107912997 OS=Gossypium hirsutum OX=3635 GN=LOC107912997 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.4e-14
Identity = 49/79 (62.03%), Postives = 54/79 (68.35%), Query Frame = 0

Query: 2   KNGKAPSPVTLLERLREAVFRFIMLCAFSKASNHHRSHPAGAGFPADDDVMRRRHSYQNA 61
           KN K  SPVTLLER REAVFR IML A SKAS+HH  H +     +   V RR   Y  A
Sbjct: 54  KNNKRLSPVTLLERFREAVFRLIMLSALSKASHHHHHHQS-----SSSTVPRR---YYPA 113

Query: 62  DHHHSEAVADCIEFIKKKA 81
           D HH+EAVADCIEFIKKK+
Sbjct: 114 DAHHNEAVADCIEFIKKKS 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0025678.11.2e-2675.00Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK1... [more]
KAG6603914.14.7e-2674.71hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49339.22.3e-2575.58hypothetical protein Csa_003207 [Cucumis sativus][more]
KAF9682207.11.4e-1460.26hypothetical protein SADUNF_Sadunf05G0084600 [Salix dunnii][more]
KAG8478177.15.4e-1462.03hypothetical protein CXB51_027971 [Gossypium anomalum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SHP06.0e-2775.00Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A0A0KGN31.1e-2575.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1[more]
A0A7J8XH782.6e-1462.03Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_014215 PE=4 SV=1[more]
A0A5D2NDI04.4e-1462.03Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G199100v1 P... [more]
A0A1U8K2Y44.4e-1462.03uncharacterized protein LOC107912997 OS=Gossypium hirsutum OX=3635 GN=LOC1079129... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35111:SF1EXPRESSED PROTEINcoord: 3..86
NoneNo IPR availablePANTHERPTHR35111F10A5.9-RELATEDcoord: 3..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0025479.1Sed0025479.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009626 plant-type hypersensitive response
biological_process GO:2000031 regulation of salicylic acid mediated signaling pathway
biological_process GO:0010337 regulation of salicylic acid metabolic process