Sed0025451 (gene) Chayote v1

Overview
NameSed0025451
Typegene
OrganismSechium edule (Chayote v1)
Descriptionserine/arginine-rich splicing factor RS2Z32-like isoform X1
LocationLG07: 40069273 .. 40072138 (-)
RNA-Seq ExpressionSed0025451
SyntenySed0025451
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTTTCCAACGACGTGAAAGTTAGGGTTCCAGATCTTCTTTGTTTCCAGGTGCGCCTCTTCGTTCGATTTTTCTAGGTTTTCTCTCCTCAAATTCTCTTACTCCATGTTCATCTCATCTTTCTATTGATTTGTTTTATCATCAAGGATATGTAGCTGTTTAATCCATCACATATGTACTTTTTTTGTGATTTTTCTCTTCAAAACCTCACTATCTAATCGTATATACATTTTGTTTGTTTCCAAGTTTGTTGCTTTCGAATTCCTGCTGTGAAATTCTGTCGCTGATGATGGTATCGTGACTTTCGATTGTAGATATAATGCCTCGTTACGACGATCGATACGGCGGTACTCGGCTCTACGTTGGGCACCTGTCTTCAAGGACAAGGTCTCGTGATCTGGATGACATGTTCAGTCGTTATGGAAGGTATGTGGATTTGTCTAATTTTGTATGTTAATGTTAATTTAATGAATTCATAATATCTGTGTTTAGTTGTGTCCTATTATTCTTGTGCTAACAGTATTTTCAGAGTAAATTATTAATTGATACTTCTCTCTTGACATCTTGAGGTATTTTGTCAAGCCCTTCTTTGGGTGCTTGATTGCAAATGTTTGATTTTTGTATATCCATGAAGGTTGTGGAATTTTTTATGGGTCTGCGTGGTTTAAAACTTTAACTTGAGTGATCTTGTTGAAGGTCTCTTGGCTTATGCCAAACCTGGAGGTCTATGGTGAGAGGGTTCCCTTGGTGGATTTGGCGAGTCTTTCTATTATGTTATTGCCTGTTTTTATGGAAATGCCAAGAATCTCAGAATGGTGTTTAGTTCATCTATGAGGGGCGAGGTGTCAACCCTTTGATTGTATCAAATGATGGTCTTACCTGTTTCTGGAAACCATTTGCGCAGAGTACGAGATGTGGATATGAAGCGAGACTATGCATTTGTTGTATGTATTTCCCTCCCTTTACTTTATCCAGTTTTTTATTCAGACTGTAAATGCAATAAAAAGGCTATCTGCGACATTCATTTTTCTATACTTCGATGGTGCATGTTAATTTTTGCAACCGTGATCTTTTTTTCTTGGTCTATCTGCTTAAACATCTGATACCAGGAGTTTAGCGATCCCCGAGATGCTGATGATGCAAGATATAGTTTGAATGGGAGGGATGTTCATGGAAGTCGAATCATTGTTGAAATAGCTAAAGGGGTATGCACAATTATCTTTGTTGAATAACCCTTTCATTAATTGTTTAATCAGTTGCTTCTGCTTTCTCAATGCTTGTTATCTAATACATCCTTATGTTTCGTTTTGCATTTTTATCCCGCCTTTGTATGATTCTGATCTTTTATGCTCTTTTGAAATATAGTTTTGACATTTTTTTATACCTCAAAAATATCCTCCATCACCCTTTCATGTACCATTCCAGTTTCTTGCACCCTTACGTTTGTTCATATAAAGGCTATTTAGTTTTACTAGCTTGTTTGGGCATATATTGGTTTTTTATTATTATCTCAATGTGATGAAAATATTCAATTATGAGTTAGGTACCCCGTGGTCCTGGTGGATTTCGTGAATTTGGTGGCTCTCGTGAATTTGGTGGATCTCGTGAATTGGGTGGCAGAGGCCCTCCTGGAGCTGGCCGTTGTTTTAATTGTGGGATTGATGGCCACTGGGCTAGAGATTGCAAGGCTGGTGACTGGAAAAACAAGTGTTATCGATGTGGGGAACGGGGCCACATAGAGAAGAATTGCCAAAACAGTCCTAAGAAATTGAAGTACGGTATCTTTTCAATTGTTTCTTTTCTTCACTTTTTGTTTTTGTTTCAAGATAATCATAAAAACATTGTATTGAACAGGCGAGATGAATATTCACGTTCACCAAGCCCTCGCCGTGGTAGAAGTCGTAGTCGAAGTCGAAGCCGTAGTTACAGCAGAGGTCGTAGCGACAGGTTTGTTGCAATTTAACCATTTTCATTTATTCATTATAGTATCTATCTTGATTCGCAATTGAATTGTGAGTTTTTATGAGTTTGTCGATTAATGACTGACCTTTGAACTTCAAACCTTCAAACCTTTTGAATTCAACTTACATTTGTGTATTGTGTCCATAGTCGACATCGGTCACCTGTTAAAAGAGAGAGAAGTGTTGAACGATCAGAAAAAAGATCAAGGAGCCCAAGAGGTCGCTCAAGCCCTAGGAGGCACAGTTTGTCACCTCCTCCTTCAAAAGCTATGAAGCGTAGCCCTAGCCCTAGCCCGGATGAGAGGAGTCCAGAAGAAGCAAGACGCAGTCCATCTTCTGGAAATCGTGACAGTCCTAGGGGAAGAAGCAGAAGCCCTAGAGGAAGGAGCAGAAGCCCAATGGATGAAGCCGAGGACTTCAACGGCAGTGAAAAGAGGGAAGAGAACGGCTACAGTCGCAGCCCCAGTCCGTTGCCCCGAGAAGAAAGGAGTCGGAGTCCTGTAAACGATGAAGATAACGACGGTTCTCCGAGGGGCGGTAGCGAGTCTGCATAGTAGACAGTTTGTTGATTGTGCTTCTGCTAAAACAGATGCTTTGGGTTGACATTTTATAAGCGACTGCCTCTTAAATAGAGCTGTATTGTGACTGTGAGTGATTGAATTCCCGTCTAGAATGTTCATCAGCAACGTATTTTGCCTATTTATTTTCCATCTTAATTATGATATATTATATATAATAATCCGCATTCTAGTGCTCTTGGTTCATTTGATTTGGTCATCTGATTGTTCTATATTAATTTCTGGGCTTATGAATACTGTCTAGAATAGTTTGTTAATTATATGATTTCAATATCATTACGTATACATGAATGAAGTTTATCTGTTTATGCTATAAAATATTGAGG

mRNA sequence

ATTTTTTCCAACGACGTGAAAGTTAGGGTTCCAGATCTTCTTTGTTTCCAGGTGCGCCTCTTCGTTCGATTTTTCTAGATATAATGCCTCGTTACGACGATCGATACGGCGGTACTCGGCTCTACGTTGGGCACCTGTCTTCAAGGACAAGGTCTCGTGATCTGGATGACATGTTCAGTCGTTATGGAAGAGTACGAGATGTGGATATGAAGCGAGACTATGCATTTGTTGAGTTTAGCGATCCCCGAGATGCTGATGATGCAAGATATAGTTTGAATGGGAGGGATGTTCATGGAAGTCGAATCATTGTTGAAATAGCTAAAGGGGTACCCCGTGGTCCTGGTGGATTTCGTGAATTTGGTGGCTCTCGTGAATTTGGTGGATCTCGTGAATTGGGTGGCAGAGGCCCTCCTGGAGCTGGCCGTTGTTTTAATTGTGGGATTGATGGCCACTGGGCTAGAGATTGCAAGGCTGGTGACTGGAAAAACAAGTGTTATCGATGTGGGGAACGGGGCCACATAGAGAAGAATTGCCAAAACAGTCCTAAGAAATTGAAGCGAGATGAATATTCACGTTCACCAAGCCCTCGCCGTGGTAGAAGTCGTAGTCGAAGTCGAAGCCGTAGTTACAGCAGAGGTCGTAGCGACAGTCGACATCGGTCACCTGTTAAAAGAGAGAGAAGTGTTGAACGATCAGAAAAAAGATCAAGGAGCCCAAGAGGTCGCTCAAGCCCTAGGAGGCACAGTTTGTCACCTCCTCCTTCAAAAGCTATGAAGCGTAGCCCTAGCCCTAGCCCGGATGAGAGGAGTCCAGAAGAAGCAAGACGCAGTCCATCTTCTGGAAATCGTGACAGTCCTAGGGGAAGAAGCAGAAGCCCTAGAGGAAGGAGCAGAAGCCCAATGGATGAAGCCGAGGACTTCAACGGCAGTGAAAAGAGGGAAGAGAACGGCTACAGTCGCAGCCCCAGTCCGTTGCCCCGAGAAGAAAGGAGTCGGAGTCCTGTAAACGATGAAGATAACGACGGTTCTCCGAGGGGCGGTAGCGAGTCTGCATAGTAGACAGTTTGTTGATTGTGCTTCTGCTAAAACAGATGCTTTGGGTTGACATTTTATAAGCGACTGCCTCTTAAATAGAGCTGTATTGTGACTGTGAGTGATTGAATTCCCGTCTAGAATGTTCATCAGCAACGTATTTTGCCTATTTATTTTCCATCTTAATTATGATATATTATATATAATAATCCGCATTCTAGTGCTCTTGGTTCATTTGATTTGGTCATCTGATTGTTCTATATTAATTTCTGGGCTTATGAATACTGTCTAGAATAGTTTGTTAATTATATGATTTCAATATCATTACGTATACATGAATGAAGTTTATCTGTTTATGCTATAAAATATTGAGG

Coding sequence (CDS)

ATGCCTCGTTACGACGATCGATACGGCGGTACTCGGCTCTACGTTGGGCACCTGTCTTCAAGGACAAGGTCTCGTGATCTGGATGACATGTTCAGTCGTTATGGAAGAGTACGAGATGTGGATATGAAGCGAGACTATGCATTTGTTGAGTTTAGCGATCCCCGAGATGCTGATGATGCAAGATATAGTTTGAATGGGAGGGATGTTCATGGAAGTCGAATCATTGTTGAAATAGCTAAAGGGGTACCCCGTGGTCCTGGTGGATTTCGTGAATTTGGTGGCTCTCGTGAATTTGGTGGATCTCGTGAATTGGGTGGCAGAGGCCCTCCTGGAGCTGGCCGTTGTTTTAATTGTGGGATTGATGGCCACTGGGCTAGAGATTGCAAGGCTGGTGACTGGAAAAACAAGTGTTATCGATGTGGGGAACGGGGCCACATAGAGAAGAATTGCCAAAACAGTCCTAAGAAATTGAAGCGAGATGAATATTCACGTTCACCAAGCCCTCGCCGTGGTAGAAGTCGTAGTCGAAGTCGAAGCCGTAGTTACAGCAGAGGTCGTAGCGACAGTCGACATCGGTCACCTGTTAAAAGAGAGAGAAGTGTTGAACGATCAGAAAAAAGATCAAGGAGCCCAAGAGGTCGCTCAAGCCCTAGGAGGCACAGTTTGTCACCTCCTCCTTCAAAAGCTATGAAGCGTAGCCCTAGCCCTAGCCCGGATGAGAGGAGTCCAGAAGAAGCAAGACGCAGTCCATCTTCTGGAAATCGTGACAGTCCTAGGGGAAGAAGCAGAAGCCCTAGAGGAAGGAGCAGAAGCCCAATGGATGAAGCCGAGGACTTCAACGGCAGTGAAAAGAGGGAAGAGAACGGCTACAGTCGCAGCCCCAGTCCGTTGCCCCGAGAAGAAAGGAGTCGGAGTCCTGTAAACGATGAAGATAACGACGGTTCTCCGAGGGGCGGTAGCGAGTCTGCATAG

Protein sequence

MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRGPPGAGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRDEYSRSPSPRRGRSRSRSRSRSYSRGRSDSRHRSPVKRERSVERSEKRSRSPRGRSSPRRHSLSPPPSKAMKRSPSPSPDERSPEEARRSPSSGNRDSPRGRSRSPRGRSRSPMDEAEDFNGSEKREENGYSRSPSPLPREERSRSPVNDEDNDGSPRGGSESA
Homology
BLAST of Sed0025451 vs. NCBI nr
Match: XP_038892927.1 (serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Benincasa hispida] >XP_038892928.1 serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Benincasa hispida])

HSP 1 Score: 498.0 bits (1281), Expect = 5.9e-137
Identity = 279/327 (85.32%), Postives = 288/327 (88.07%), Query Frame = 0

Query: 1   MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
           MPRYDDRYGGTRLYVG LSSRTRSRDLDD+FSRYGRVRDVDMKRDYAFVEFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRGPPGAGRCFNCGI 120
           RYSLNGRDVHGSRIIVEIAKGVPRGP            GGSRE  GRGPPG GRCFNCGI
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGP------------GGSREYLGRGPPGTGRCFNCGI 120

Query: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRDEYSRSPSPRRGRSRSRSRSR 180
           DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKR  YSRSPSPRRG    RSRSR
Sbjct: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRG----RSRSR 180

Query: 181 SYSRGRSDSRHRSPVKRERSVERSEKRSRSPRGRSSPRRHSLSPPPSKAMKRSPSPSPDE 240
           SYSRGRS SR RSPVKRERS+ERS+KRSRSPRGRSSP+RHSLSPPP K MKR  SP+PDE
Sbjct: 181 SYSRGRSYSRSRSPVKRERSLERSDKRSRSPRGRSSPKRHSLSPPP-KTMKR--SPTPDE 240

Query: 241 RSPEEARRSPSSGNRDSPRGRSRSPRGRSRSPMDEAEDFNG----SEKREENGYSRSPSP 300
           RSPEEARRS S GNRDSPRGRSRSPRGRSRSPMDE EDF+G    + +REENGYSRSPSP
Sbjct: 241 RSPEEARRSLSPGNRDSPRGRSRSPRGRSRSPMDEGEDFSGGGSRNYRREENGYSRSPSP 300

Query: 301 LPREERSRSPVNDEDNDGSPRGGSESA 324
           LPREE  RSPVNDED +GSPRGGSESA
Sbjct: 301 LPREE--RSPVNDEDQNGSPRGGSESA 306

BLAST of Sed0025451 vs. NCBI nr
Match: XP_022942535.1 (serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Cucurbita moschata] >XP_022942536.1 serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 496.1 bits (1276), Expect = 2.3e-136
Identity = 283/343 (82.51%), Postives = 292/343 (85.13%), Query Frame = 0

Query: 1   MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
           MPRYDDRYGGTRLYVG LSSRTRSRDLDD+FSRYGRVRDVDMKRDYAFVEFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRGPPGAGRCFNCGI 120
           RYSLNGRDVHGSRIIVEIAKGVPRGPGG RE         SRE  GRGPPG GRCFNCGI
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGSRE---------SREYLGRGPPGTGRCFNCGI 120

Query: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRDEYSRSPSPRRGRSRSRSRSR 180
           DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKR  YSRSPSPRRG    RSRSR
Sbjct: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRG----RSRSR 180

Query: 181 SYSRGRSDSRHRSPVKRERSVERSEKRSRSPR-GRSSPRRHSLSPPPSKAMKRSPSPSPD 240
           SYSRGRS SR RSPVKR+RS+ERSEKRSRSPR GR SP+RHSLSPPPSKAMKR  SP+PD
Sbjct: 181 SYSRGRSYSRSRSPVKRDRSLERSEKRSRSPRGGRLSPKRHSLSPPPSKAMKR--SPTPD 240

Query: 241 ERSPEEARRSPSSGNRDSPRG---------------RSRSPRGRSRSPMDEAEDFNG--- 300
            RSPEEARRSPS GNRDSPRG               RSRSPRGRSRSPMDEAEDFNG   
Sbjct: 241 VRSPEEARRSPSPGNRDSPRGRSRSRSRSPRGRSRSRSRSPRGRSRSPMDEAEDFNGGGS 300

Query: 301 -SEKREENGYSRSPSPLPREERSRSPVNDEDNDGSPRGGSESA 324
            + ++EENGYSRSPSPLPREE  RSPVNDED +GSPRGGSESA
Sbjct: 301 RNYRKEENGYSRSPSPLPREE--RSPVNDEDANGSPRGGSESA 326

BLAST of Sed0025451 vs. NCBI nr
Match: XP_008445806.1 (PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform X2 [Cucumis melo] >XP_008445807.1 PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform X2 [Cucumis melo])

HSP 1 Score: 493.0 bits (1268), Expect = 1.9e-135
Identity = 281/330 (85.15%), Postives = 290/330 (87.88%), Query Frame = 0

Query: 1   MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
           MPRYDDRYGGTRLYVG LSSRTRSRDLDD+FSRYGRVRDVDMKRDYAFVEFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRGPPGAGRCFNCGI 120
           RYSLNGRDVHGSRIIVEIAKGVPRGP            GGSRE  GRGPPG GRCFNCGI
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGP------------GGSREYLGRGPPGTGRCFNCGI 120

Query: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRDEYSRSPSPRRGRSRSRSRSR 180
           DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKR  YSRSPSPRRG    RSRSR
Sbjct: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRG----RSRSR 180

Query: 181 SYSRGRSDSRHRSPVKRERSVERSEKRSRSPRGRSSPRRHSLSPPPSKAMKRSPSPSPDE 240
           SYSRGRS SR RSPVKR+RS+ERS+KRSRSPRGRSSP+RHSLSPPP KAMKR  SP+PDE
Sbjct: 181 SYSRGRSYSRSRSPVKRDRSLERSDKRSRSPRGRSSPKRHSLSPPP-KAMKR--SPTPDE 240

Query: 241 RSPEE-ARRSPSSGNRD--SPRGRSRSPRGRSRSPMDEAEDFNG----SEKREENGYSRS 300
           RSPEE ARRS S GNRD  SPRGRSRSPRGRSRSPMDE EDFNG    + +REENGYSRS
Sbjct: 241 RSPEEDARRSLSPGNRDSRSPRGRSRSPRGRSRSPMDEGEDFNGGGSRNYRREENGYSRS 300

Query: 301 PSPLPREERSRSPVNDEDNDGSPRGGSESA 324
           PSPLPREE  RSPVNDEDN+GSPRGGSESA
Sbjct: 301 PSPLPREE--RSPVNDEDNNGSPRGGSESA 309

BLAST of Sed0025451 vs. NCBI nr
Match: XP_022139066.1 (serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Momordica charantia] >XP_022139067.1 serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Momordica charantia] >XP_022139068.1 serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Momordica charantia])

HSP 1 Score: 492.3 bits (1266), Expect = 3.3e-135
Identity = 280/347 (80.69%), Postives = 290/347 (83.57%), Query Frame = 0

Query: 1   MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
           MPRYDDRYGGTRLYVG LSSRTRSRDLDD+FSRYGRVRDVDMKRDYAFVEFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRGPPGAGRCFNCGI 120
           RYSLNGRDVHGSRIIVEIAKGVPRGP            GGSRE  GRGPPG GRCFNCGI
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGP------------GGSREYLGRGPPGTGRCFNCGI 120

Query: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRDEYSRSPSPRRGRSRSRSRSR 180
           DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKR  YSRSPSPRRG    RSRSR
Sbjct: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRG--GGRSRSR 180

Query: 181 SYSRGRSDSRHRSPVKRERSVERSEKRSRSPRGRSSPRRHSLSPPPSKAMKRSPSPSPDE 240
           SYSRGRS SR RSP+KRERS+ERSEKRSRSPRGR SP+RHSLSPPP KAMKR  SP+PDE
Sbjct: 181 SYSRGRSYSRSRSPIKRERSLERSEKRSRSPRGRPSPKRHSLSPPP-KAMKR--SPTPDE 240

Query: 241 RSPEEARRSPSSGNRD---------------------SPRGRSRSPRGRSRSPMDEAEDF 300
           RSPEEARRSPS GNRD                     SPRGRSRSPRGRSRSPMDEAEDF
Sbjct: 241 RSPEEARRSPSPGNRDSPRGRSRSPRGRSRSPRGRSRSPRGRSRSPRGRSRSPMDEAEDF 300

Query: 301 NGSE---KREENGYSRSPSPLPREERSRSPVNDEDNDGSPRGGSESA 324
           +G     +REENGYSRSPSPLPREE  RSP+NDEDN+G+PRGGSESA
Sbjct: 301 DGGSRNYRREENGYSRSPSPLPREE--RSPINDEDNNGTPRGGSESA 328

BLAST of Sed0025451 vs. NCBI nr
Match: XP_004143594.1 (serine/arginine-rich splicing factor RS2Z32 isoform X2 [Cucumis sativus] >XP_004143595.1 serine/arginine-rich splicing factor RS2Z32 isoform X2 [Cucumis sativus] >XP_031741874.1 serine/arginine-rich splicing factor RS2Z32 isoform X2 [Cucumis sativus] >KAE8647969.1 hypothetical protein Csa_000224 [Cucumis sativus])

HSP 1 Score: 491.5 bits (1264), Expect = 5.6e-135
Identity = 280/329 (85.11%), Postives = 289/329 (87.84%), Query Frame = 0

Query: 1   MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
           MPRYDDRYGGTRLYVG LSSRTRSRDLDD+FSRYGRVRDVDMKRDYAFVEFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRGPPGAGRCFNCGI 120
           RYSLNGRDVHGSRIIVEIAKGVPRGP            GGSRE  GRGPPG GRCFNCGI
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGP------------GGSREYLGRGPPGTGRCFNCGI 120

Query: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRDEYSRSPSPRRGRSRSRSRSR 180
           DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKR  YSRSPSPRRG    RSRSR
Sbjct: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRG----RSRSR 180

Query: 181 SYSRGRSDSRHRSPVKRERSVERSEKRSRSPRGRSSPRRHSLSPPPSKAMKRSPSPSPDE 240
           SYSRGRS SR RSPVKR+RS+ERS+KRSRSPRGRSSP+RHSLSPPP KAMKR  SP+PDE
Sbjct: 181 SYSRGRSYSRSRSPVKRDRSLERSDKRSRSPRGRSSPKRHSLSPPP-KAMKR--SPTPDE 240

Query: 241 RSPEE-ARRSPSSGNRD--SPRGRSRSPRGRSRSPMDEAEDFNG----SEKREENGYSRS 300
           RSPEE ARRS S GNRD  SPRGRSRSPRGRSRSPMDE EDFNG    + +REENGYSRS
Sbjct: 241 RSPEEDARRSLSPGNRDSRSPRGRSRSPRGRSRSPMDEGEDFNGGGSRNYRREENGYSRS 300

Query: 301 PSPLPREERSRSPVNDEDNDGSPRGGSES 323
           PSPLPREE  RSPVNDEDN+GSPRGGSES
Sbjct: 301 PSPLPREE--RSPVNDEDNNGSPRGGSES 308

BLAST of Sed0025451 vs. ExPASy Swiss-Prot
Match: Q9FYB7 (Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana OX=3702 GN=RS2Z32 PE=1 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 5.3e-72
Identity = 180/306 (58.82%), Postives = 206/306 (67.32%), Query Frame = 0

Query: 1   MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
           MPRYDDRYG TRLYVG LSSRTR+RDL+ +FSRYGRVRDVDMKRDYAFVEFSDPRDADDA
Sbjct: 1   MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRG-PPGAGRCFNCG 120
           RY L+GRD  GSRI VE ++G PR               GSR+ G RG PPG+GRCFNCG
Sbjct: 61  RYYLDGRDFDGSRITVEASRGAPR---------------GSRDNGSRGPPPGSGRCFNCG 120

Query: 121 IDGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRDE---YSRSP----SPRRGR 180
           +DGHWARDC AGDWKNKCYRCGERGHIE+NC+NSP   K  +   YSRSP    SPR  R
Sbjct: 121 VDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSPKKARQGGSYSRSPVKSRSPR--R 180

Query: 181 SRSRSRSRSYSRGRSDSRHRSPVKRERSVE------RSEKRSRSPRGRS---SPRRHSLS 240
            RS SRSRSYSRGRS SR RSPV+RE+SVE      ++ +RS SP+GR    SP R  + 
Sbjct: 181 RRSPSRSRSYSRGRSYSRSRSPVRREKSVEDRSRSPKAMERSVSPKGRDQSLSPDRKVID 240

Query: 241 PPPSKAMKRSPSPSPDERSPEEARRSPSSGNRDSPRGRSRSPRGRSRSPM-DEAEDFNGS 289
             P +      SP  +      A  SP  G  +SP G +    G+ RSP+ DEAE    S
Sbjct: 241 ASPKRGSDYDGSPKENGNGRNSA--SPIVGGGESPVGLN----GQDRSPIDDEAELSRPS 283

BLAST of Sed0025451 vs. ExPASy Swiss-Prot
Match: Q8VYA5 (Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana OX=3702 GN=RS2Z33 PE=1 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.1e-69
Identity = 181/332 (54.52%), Postives = 207/332 (62.35%), Query Frame = 0

Query: 1   MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
           MPRYDDRYG TRLYVG LSSRTR+RDL+ +FSRYGRVRDVDMKRDYAFVEF DPRDADDA
Sbjct: 1   MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDA 60

Query: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRG-PPGAGRCFNCG 120
           R+ L+GRD  GSRI VE ++G PR               GSR+   RG PPGAGRCFNCG
Sbjct: 61  RHYLDGRDFDGSRITVEFSRGAPR---------------GSRDFDSRGPPPGAGRCFNCG 120

Query: 121 IDGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRD-EYSRSPSPRRGRSRSRSR 180
           +DGHWARDC AGDWKNKCYRCGERGHIE+NC+NSPKKL+R   YSRSP   R   R RS 
Sbjct: 121 VDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSP 180

Query: 181 SRSYSRGRSDSRHRSPV-KRERSVERSEKRSRSPRGRSSPRRHSLSPPPSKAMKRSPSPS 240
           SRS SR RS SR RSPV +RERSV   E+RSRSP+                         
Sbjct: 181 SRSLSRSRSYSRSRSPVRRRERSV---EERSRSPKRMD---------------------- 240

Query: 241 PDERSPEEARRSPSSGNRDSPRGRSRSPRGRSRSPMDEAEDFNGSEKREENGYSRSPSPL 300
            D  SP    RSP   +  SP+    SP    +   +   D +G    ++NG +   SP+
Sbjct: 241 -DSLSPRARDRSPVLDDEGSPKIIDGSPPPSPKLQKEVGSDRDGGSP-QDNGRNSVVSPV 289

Query: 301 -----PREERSRSPVND--EDNDGSPRGGSES 323
                   +  RSPV+D  E N  SPR GSES
Sbjct: 301 VGAGGDSSKEDRSPVDDDYEPNRTSPR-GSES 289

BLAST of Sed0025451 vs. ExPASy Swiss-Prot
Match: Q23121 (Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis elegans OX=6239 GN=rsp-1 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-19
Identity = 121/327 (37.00%), Postives = 154/327 (47.09%), Query Frame = 0

Query: 12  RLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYSLNGRDVHG 71
           R+Y+G L+SR   +D++  F  YG++RDV +K  + FVEF D RDA+DA + LNG+++ G
Sbjct: 4   RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63

Query: 72  SRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRGPPGAGR-CFNCGIDGHWARDCKA 131
            R+I++ +K  PRG GG R   G    GG+R     G  G GR  F+    G   R+ + 
Sbjct: 64  ERVILDYSK--PRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRESRY 123

Query: 132 G---------------------DWKNKCYRCG-----ERGHIEKN----CQNSPKKLKR- 191
           G                     D K++  R G        H   N    C  +P  LKR 
Sbjct: 124 GRPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPNEALLCFATPSDLKRC 183

Query: 192 -----------------DE----YSRSPSPRRGRSRSRS----RSRSYSRGRSDSRHRSP 251
                            D+     SRS S  R RSRSRS    RSRS S  RS SR RSP
Sbjct: 184 IEKCDGMDLNGRKIKMIDDSQAGRSRSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRSRSP 243

Query: 252 VKRERSVERSEKRSRSPRGRSSPRRHSLSPPPS-KAMKRSPSPSPDERSPEEARRSPSSG 281
            KR R   +S+ RSRS R RS+  R S SP  S K + RSPSP    RSP E        
Sbjct: 244 PKRSRRESKSKSRSRS-RSRSADNRKSRSPSRSPKKVDRSPSPPRGSRSPSE-------- 303

BLAST of Sed0025451 vs. ExPASy Swiss-Prot
Match: Q8VE97 (Serine/arginine-rich splicing factor 4 OS=Mus musculus OX=10090 GN=Srsf4 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.9e-17
Identity = 120/320 (37.50%), Postives = 160/320 (50.00%), Query Frame = 0

Query: 12  RLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYSLNGRDVHG 71
           R+Y+G LS + R RD++  F  YG++ +VD+K  Y FVEF D RDADDA Y LNG+D+ G
Sbjct: 3   RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62

Query: 72  SRIIVEIAKGVPRGPGGFREFGGSREFGGSRELG--GRGPPGAGRCFNCGIDGHWARDCK 131
            R+IVE A+G PR  G    +G  R   G R  G    GPP     +   ++   +R C 
Sbjct: 63  ERVIVEHARG-PRRDG---SYGSGRSGYGYRRSGRDKYGPPTRTE-YRLIVENLSSR-CS 122

Query: 132 AGDWKNKCYRCGE------------RGHIE----KNCQNSPKKLKRDEYSR------SPS 191
             D K+   + GE             G IE     + + + +KL   E +          
Sbjct: 123 WQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDK 182

Query: 192 PRRGRSRSRSRSRSYSRGRSDSRHRSPVKRERSVERSEKRSRS-PRGRSSPRRHSLSPPP 251
           P   R RS SRSRS+SR RS SRH    ++ RS   S K S S  R RS    HS S   
Sbjct: 183 PGSRRRRSYSRSRSHSRSRSRSRHS---RKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSR 242

Query: 252 SKAMKRSPSPSPDERSPEEARRSPSSGNRDSPRGRSRSP-RGRSRSPMDEAEDFNGSEKR 306
           S++  RS       RS +E  RSPS  N+   R RSRSP + RS+S  D AED    +  
Sbjct: 243 SRSQSRS-------RSKKEKSRSPSKDNKS--RSRSRSPDKSRSKS-KDHAED--KLQNN 301

BLAST of Sed0025451 vs. ExPASy Swiss-Prot
Match: Q3B7L6 (Serine/arginine-rich splicing factor 6 OS=Bos taurus OX=9913 GN=SRSF6 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-16
Identity = 126/347 (36.31%), Postives = 162/347 (46.69%), Query Frame = 0

Query: 12  RLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYSLNGRDVHG 71
           R+Y+G LS   R +D+   FS YGR+  +D+K  Y FVEF D RDADDA Y LNG+++ G
Sbjct: 3   RVYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62

Query: 72  SRIIVEIAKGVPRGPGGFREFGGSREFGG---SRELGGR---GPPGAGRCFNCGIDGHWA 131
            R+IVE A+G  R   G+    GSR  GG   SR   GR   GPP     F   ++   +
Sbjct: 63  ERVIVEHARGPRRDRDGYSY--GSRSGGGGYSSRRTSGRDKYGPPVRTE-FRLIVENLSS 122

Query: 132 RDCKAGDWKNKCYRCGE------------RGHIEKNCQNSPKK--------------LKR 191
           R C   D K+   + GE             G IE    +  K+              ++ 
Sbjct: 123 R-CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 182

Query: 192 DEYSRSPSPRRGRSRSRSRSRSYSRGRSDSRHRSPVKRERSVERSEKRSRS-PRGRSSPR 251
            E     S RR  S SRSRSRS  R RS SR RS   R RS+ +S  RSRS  +GRS  R
Sbjct: 183 IEDKPRTSHRRSYSGSRSRSRSRRRSRSRSR-RSSRSRSRSISKSRSRSRSRSKGRSRSR 242

Query: 252 RHSLSPPPSKAMKRSPSPSPDERSPEEARRSPSSGNRDSPRGRSRSPRGRSRSPMDEAED 311
                    K+  +S S    +R      RS S    +  R RSRS   RSRSP +  + 
Sbjct: 243 SKG-----RKSRSKSKSKPKSDRGSRSRSRSRSKDEYEKSRSRSRS---RSRSPKENGKG 302

Query: 312 FNGSEKREENGYSRSPSPL---PREERSRSPVNDEDNDGSPRGGSES 323
              S+ R  +  SRS SPL   P + RS SP     +    R  S+S
Sbjct: 303 DIKSKSRSRS-QSRSDSPLPAPPSKARSVSPPPKRASRSHSRSRSKS 335

BLAST of Sed0025451 vs. ExPASy TrEMBL
Match: A0A6J1FWH1 (serine/arginine-rich splicing factor RS2Z32-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447542 PE=4 SV=1)

HSP 1 Score: 496.1 bits (1276), Expect = 1.1e-136
Identity = 283/343 (82.51%), Postives = 292/343 (85.13%), Query Frame = 0

Query: 1   MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
           MPRYDDRYGGTRLYVG LSSRTRSRDLDD+FSRYGRVRDVDMKRDYAFVEFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRGPPGAGRCFNCGI 120
           RYSLNGRDVHGSRIIVEIAKGVPRGPGG RE         SRE  GRGPPG GRCFNCGI
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGSRE---------SREYLGRGPPGTGRCFNCGI 120

Query: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRDEYSRSPSPRRGRSRSRSRSR 180
           DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKR  YSRSPSPRRG    RSRSR
Sbjct: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRG----RSRSR 180

Query: 181 SYSRGRSDSRHRSPVKRERSVERSEKRSRSPR-GRSSPRRHSLSPPPSKAMKRSPSPSPD 240
           SYSRGRS SR RSPVKR+RS+ERSEKRSRSPR GR SP+RHSLSPPPSKAMKR  SP+PD
Sbjct: 181 SYSRGRSYSRSRSPVKRDRSLERSEKRSRSPRGGRLSPKRHSLSPPPSKAMKR--SPTPD 240

Query: 241 ERSPEEARRSPSSGNRDSPRG---------------RSRSPRGRSRSPMDEAEDFNG--- 300
            RSPEEARRSPS GNRDSPRG               RSRSPRGRSRSPMDEAEDFNG   
Sbjct: 241 VRSPEEARRSPSPGNRDSPRGRSRSRSRSPRGRSRSRSRSPRGRSRSPMDEAEDFNGGGS 300

Query: 301 -SEKREENGYSRSPSPLPREERSRSPVNDEDNDGSPRGGSESA 324
            + ++EENGYSRSPSPLPREE  RSPVNDED +GSPRGGSESA
Sbjct: 301 RNYRKEENGYSRSPSPLPREE--RSPVNDEDANGSPRGGSESA 326

BLAST of Sed0025451 vs. ExPASy TrEMBL
Match: A0A1S3BDJ7 (serine/arginine-rich splicing factor RS2Z32-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488725 PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 9.2e-136
Identity = 281/330 (85.15%), Postives = 290/330 (87.88%), Query Frame = 0

Query: 1   MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
           MPRYDDRYGGTRLYVG LSSRTRSRDLDD+FSRYGRVRDVDMKRDYAFVEFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRGPPGAGRCFNCGI 120
           RYSLNGRDVHGSRIIVEIAKGVPRGP            GGSRE  GRGPPG GRCFNCGI
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGP------------GGSREYLGRGPPGTGRCFNCGI 120

Query: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRDEYSRSPSPRRGRSRSRSRSR 180
           DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKR  YSRSPSPRRG    RSRSR
Sbjct: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRG----RSRSR 180

Query: 181 SYSRGRSDSRHRSPVKRERSVERSEKRSRSPRGRSSPRRHSLSPPPSKAMKRSPSPSPDE 240
           SYSRGRS SR RSPVKR+RS+ERS+KRSRSPRGRSSP+RHSLSPPP KAMKR  SP+PDE
Sbjct: 181 SYSRGRSYSRSRSPVKRDRSLERSDKRSRSPRGRSSPKRHSLSPPP-KAMKR--SPTPDE 240

Query: 241 RSPEE-ARRSPSSGNRD--SPRGRSRSPRGRSRSPMDEAEDFNG----SEKREENGYSRS 300
           RSPEE ARRS S GNRD  SPRGRSRSPRGRSRSPMDE EDFNG    + +REENGYSRS
Sbjct: 241 RSPEEDARRSLSPGNRDSRSPRGRSRSPRGRSRSPMDEGEDFNGGGSRNYRREENGYSRS 300

Query: 301 PSPLPREERSRSPVNDEDNDGSPRGGSESA 324
           PSPLPREE  RSPVNDEDN+GSPRGGSESA
Sbjct: 301 PSPLPREE--RSPVNDEDNNGSPRGGSESA 309

BLAST of Sed0025451 vs. ExPASy TrEMBL
Match: A0A6J1CET7 (serine/arginine-rich splicing factor RS2Z32-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010076 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.6e-135
Identity = 280/347 (80.69%), Postives = 290/347 (83.57%), Query Frame = 0

Query: 1   MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
           MPRYDDRYGGTRLYVG LSSRTRSRDLDD+FSRYGRVRDVDMKRDYAFVEFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRGPPGAGRCFNCGI 120
           RYSLNGRDVHGSRIIVEIAKGVPRGP            GGSRE  GRGPPG GRCFNCGI
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGP------------GGSREYLGRGPPGTGRCFNCGI 120

Query: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRDEYSRSPSPRRGRSRSRSRSR 180
           DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKR  YSRSPSPRRG    RSRSR
Sbjct: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRG--GGRSRSR 180

Query: 181 SYSRGRSDSRHRSPVKRERSVERSEKRSRSPRGRSSPRRHSLSPPPSKAMKRSPSPSPDE 240
           SYSRGRS SR RSP+KRERS+ERSEKRSRSPRGR SP+RHSLSPPP KAMKR  SP+PDE
Sbjct: 181 SYSRGRSYSRSRSPIKRERSLERSEKRSRSPRGRPSPKRHSLSPPP-KAMKR--SPTPDE 240

Query: 241 RSPEEARRSPSSGNRD---------------------SPRGRSRSPRGRSRSPMDEAEDF 300
           RSPEEARRSPS GNRD                     SPRGRSRSPRGRSRSPMDEAEDF
Sbjct: 241 RSPEEARRSPSPGNRDSPRGRSRSPRGRSRSPRGRSRSPRGRSRSPRGRSRSPMDEAEDF 300

Query: 301 NGSE---KREENGYSRSPSPLPREERSRSPVNDEDNDGSPRGGSESA 324
           +G     +REENGYSRSPSPLPREE  RSP+NDEDN+G+PRGGSESA
Sbjct: 301 DGGSRNYRREENGYSRSPSPLPREE--RSPINDEDNNGTPRGGSESA 328

BLAST of Sed0025451 vs. ExPASy TrEMBL
Match: A0A0A0KS31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177110 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 2.7e-135
Identity = 280/329 (85.11%), Postives = 289/329 (87.84%), Query Frame = 0

Query: 1   MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
           MPRYDDRYGGTRLYVG LSSRTRSRDLDD+FSRYGRVRDVDMKRDYAFVEFSDPRDADDA
Sbjct: 63  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 122

Query: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRGPPGAGRCFNCGI 120
           RYSLNGRDVHGSRIIVEIAKGVPRGP            GGSRE  GRGPPG GRCFNCGI
Sbjct: 123 RYSLNGRDVHGSRIIVEIAKGVPRGP------------GGSREYLGRGPPGTGRCFNCGI 182

Query: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRDEYSRSPSPRRGRSRSRSRSR 180
           DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKR  YSRSPSPRRG    RSRSR
Sbjct: 183 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRG----RSRSR 242

Query: 181 SYSRGRSDSRHRSPVKRERSVERSEKRSRSPRGRSSPRRHSLSPPPSKAMKRSPSPSPDE 240
           SYSRGRS SR RSPVKR+RS+ERS+KRSRSPRGRSSP+RHSLSPPP KAMKR  SP+PDE
Sbjct: 243 SYSRGRSYSRSRSPVKRDRSLERSDKRSRSPRGRSSPKRHSLSPPP-KAMKR--SPTPDE 302

Query: 241 RSPEE-ARRSPSSGNRD--SPRGRSRSPRGRSRSPMDEAEDFNG----SEKREENGYSRS 300
           RSPEE ARRS S GNRD  SPRGRSRSPRGRSRSPMDE EDFNG    + +REENGYSRS
Sbjct: 303 RSPEEDARRSLSPGNRDSRSPRGRSRSPRGRSRSPMDEGEDFNGGGSRNYRREENGYSRS 362

Query: 301 PSPLPREERSRSPVNDEDNDGSPRGGSES 323
           PSPLPREE  RSPVNDEDN+GSPRGGSES
Sbjct: 363 PSPLPREE--RSPVNDEDNNGSPRGGSES 370

BLAST of Sed0025451 vs. ExPASy TrEMBL
Match: A0A6J1JVG4 (serine/arginine-rich splicing factor RS2Z32-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111489058 PE=4 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 5.1e-134
Identity = 278/334 (83.23%), Postives = 289/334 (86.53%), Query Frame = 0

Query: 1   MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
           MPRYDDRYGGTRLYVG LSSRTRSRDLDD+FSRYGRVRDVDMKRDYAFVEFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRGPPGAGRCFNCGI 120
           RYSLNGRDVHGSRIIVEIAKGVPRGPGG RE         SRE  GRGPPG GRCFNCGI
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGSRE---------SREYLGRGPPGTGRCFNCGI 120

Query: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRDEYSRSPSPRRGRSRSRSRSR 180
           DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKR  YSRSPSPRRG    RSRSR
Sbjct: 121 DGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRG----RSRSR 180

Query: 181 SYSRGRSDSRHRSPVKRERSVERSEKRSRSPR-GRSSPRRHSLSPPPSKAMKRSPSPSPD 240
           SYSRGRS SR RSPVKR+RS+ERSEKRSRSPR GR SP+RHSLSPPPSKAMKR  SP+PD
Sbjct: 181 SYSRGRSYSRSRSPVKRDRSLERSEKRSRSPRGGRLSPKRHSLSPPPSKAMKR--SPTPD 240

Query: 241 ERSPEEARRSPSSGNRDSPRG------RSRSPRGRSRSPMDEAEDFNG----SEKREENG 300
            RSPEEARRS S  NRDSPRG      RSRSPRGRSRSPMDEAEDFNG    + ++EENG
Sbjct: 241 VRSPEEARRSLSPENRDSPRGRSRRRSRSRSPRGRSRSPMDEAEDFNGGGSRNYRKEENG 300

Query: 301 YSRSPSPLPREERSRSPVNDEDNDGSPRGGSESA 324
           YSRSPSPLPREE  RSPVND++ +GSPRGGS SA
Sbjct: 301 YSRSPSPLPREE--RSPVNDDEANGSPRGGSGSA 317

BLAST of Sed0025451 vs. TAIR 10
Match: AT3G53500.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 272.7 bits (696), Expect = 3.8e-73
Identity = 180/306 (58.82%), Postives = 206/306 (67.32%), Query Frame = 0

Query: 1   MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
           MPRYDDRYG TRLYVG LSSRTR+RDL+ +FSRYGRVRDVDMKRDYAFVEFSDPRDADDA
Sbjct: 1   MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRG-PPGAGRCFNCG 120
           RY L+GRD  GSRI VE ++G PR               GSR+ G RG PPG+GRCFNCG
Sbjct: 61  RYYLDGRDFDGSRITVEASRGAPR---------------GSRDNGSRGPPPGSGRCFNCG 120

Query: 121 IDGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRDE---YSRSP----SPRRGR 180
           +DGHWARDC AGDWKNKCYRCGERGHIE+NC+NSP   K  +   YSRSP    SPR  R
Sbjct: 121 VDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSPKKARQGGSYSRSPVKSRSPR--R 180

Query: 181 SRSRSRSRSYSRGRSDSRHRSPVKRERSVE------RSEKRSRSPRGRS---SPRRHSLS 240
            RS SRSRSYSRGRS SR RSPV+RE+SVE      ++ +RS SP+GR    SP R  + 
Sbjct: 181 RRSPSRSRSYSRGRSYSRSRSPVRREKSVEDRSRSPKAMERSVSPKGRDQSLSPDRKVID 240

Query: 241 PPPSKAMKRSPSPSPDERSPEEARRSPSSGNRDSPRGRSRSPRGRSRSPM-DEAEDFNGS 289
             P +      SP  +      A  SP  G  +SP G +    G+ RSP+ DEAE    S
Sbjct: 241 ASPKRGSDYDGSPKENGNGRNSA--SPIVGGGESPVGLN----GQDRSPIDDEAELSRPS 283

BLAST of Sed0025451 vs. TAIR 10
Match: AT2G37340.1 (arginine/serine-rich zinc knuckle-containing protein 33 )

HSP 1 Score: 265.0 bits (676), Expect = 7.9e-71
Identity = 181/332 (54.52%), Postives = 207/332 (62.35%), Query Frame = 0

Query: 1   MPRYDDRYGGTRLYVGHLSSRTRSRDLDDMFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
           MPRYDDRYG TRLYVG LSSRTR+RDL+ +FSRYGRVRDVDMKRDYAFVEF DPRDADDA
Sbjct: 1   MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDA 60

Query: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRG-PPGAGRCFNCG 120
           R+ L+GRD  GSRI VE ++G PR               GSR+   RG PPGAGRCFNCG
Sbjct: 61  RHYLDGRDFDGSRITVEFSRGAPR---------------GSRDFDSRGPPPGAGRCFNCG 120

Query: 121 IDGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRD-EYSRSPSPRRGRSRSRSR 180
           +DGHWARDC AGDWKNKCYRCGERGHIE+NC+NSPKKL+R   YSRSP   R   R RS 
Sbjct: 121 VDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSP 180

Query: 181 SRSYSRGRSDSRHRSPV-KRERSVERSEKRSRSPRGRSSPRRHSLSPPPSKAMKRSPSPS 240
           SRS SR RS SR RSPV +RERSV   E+RSRSP+                         
Sbjct: 181 SRSLSRSRSYSRSRSPVRRRERSV---EERSRSPKRMD---------------------- 240

Query: 241 PDERSPEEARRSPSSGNRDSPRGRSRSPRGRSRSPMDEAEDFNGSEKREENGYSRSPSPL 300
            D  SP    RSP   +  SP+    SP    +   +   D +G    ++NG +   SP+
Sbjct: 241 -DSLSPRARDRSPVLDDEGSPKIIDGSPPPSPKLQKEVGSDRDGGSP-QDNGRNSVVSPV 289

Query: 301 -----PREERSRSPVND--EDNDGSPRGGSES 323
                   +  RSPV+D  E N  SPR GSES
Sbjct: 301 VGAGGDSSKEDRSPVDDDYEPNRTSPR-GSES 289

BLAST of Sed0025451 vs. TAIR 10
Match: AT3G53500.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 200.7 bits (509), Expect = 1.8e-51
Identity = 145/265 (54.72%), Postives = 168/265 (63.40%), Query Frame = 0

Query: 42  MKRDYAFVEFSDPRDADDARYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGS 101
           MKRDYAFVEFSDPRDADDARY L+GRD  GSRI VE ++G PR               GS
Sbjct: 1   MKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPR---------------GS 60

Query: 102 RELGGRG-PPGAGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRD 161
           R+ G RG PPG+GRCFNCG+DGHWARDC AGDWKNKCYRCGERGHIE+NC+NSP   K  
Sbjct: 61  RDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSPKKAR 120

Query: 162 E---YSRSP----SPRRGRSRSRSRSRSYSRGRSDSRHRSPVKRERSVE------RSEKR 221
           +   YSRSP    SPR  R RS SRSRSYSRGRS SR RSPV+RE+SVE      ++ +R
Sbjct: 121 QGGSYSRSPVKSRSPR--RRRSPSRSRSYSRGRSYSRSRSPVRREKSVEDRSRSPKAMER 180

Query: 222 SRSPRGRS---SPRRHSLSPPPSKAMKRSPSPSPDERSPEEARRSPSSGNRDSPRGRSRS 281
           S SP+GR    SP R  +   P +      SP  +      A  SP  G  +SP G +  
Sbjct: 181 SVSPKGRDQSLSPDRKVIDASPKRGSDYDGSPKENGNGRNSA--SPIVGGGESPVGLN-- 240

Query: 282 PRGRSRSPM-DEAEDFNGSEKREEN 289
             G+ RSP+ DEAE    S K  E+
Sbjct: 241 --GQDRSPIDDEAELSRPSPKGSES 242

BLAST of Sed0025451 vs. TAIR 10
Match: AT2G37340.3 (arginine/serine-rich zinc knuckle-containing protein 33 )

HSP 1 Score: 193.0 bits (489), Expect = 3.8e-49
Identity = 146/291 (50.17%), Postives = 169/291 (58.08%), Query Frame = 0

Query: 42  MKRDYAFVEFSDPRDADDARYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGS 101
           MKRDYAFVEF DPRDADDAR+ L+GRD  GSRI VE ++G PR               GS
Sbjct: 1   MKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPR---------------GS 60

Query: 102 RELGGRG-PPGAGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRD 161
           R+   RG PPGAGRCFNCG+DGHWARDC AGDWKNKCYRCGERGHIE+NC+NSPKKL+R 
Sbjct: 61  RDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRS 120

Query: 162 -EYSRSPSPRRGRSRSRSRSRSYSRGRSDSRHRSPV-KRERSVERSEKRSRSPRGRSSPR 221
             YSRSP   R   R RS SRS SR RS SR RSPV +RERSV   E+RSRSP+      
Sbjct: 121 GSYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSV---EERSRSPKRMD--- 180

Query: 222 RHSLSPPPSKAMKRSPSPSPDERSPEEARRSPSSGNRDSPRGRSRSPRGRSRSPMDEAED 281
                               D  SP    RSP   +  SP+    SP    +   +   D
Sbjct: 181 --------------------DSLSPRARDRSPVLDDEGSPKIIDGSPPPSPKLQKEVGSD 240

Query: 282 FNGSEKREENGYSRSPSPL-----PREERSRSPVND--EDNDGSPRGGSES 323
            +G    ++NG +   SP+        +  RSPV+D  E N  SPR GSES
Sbjct: 241 RDGGSP-QDNGRNSVVSPVVGAGGDSSKEDRSPVDDDYEPNRTSPR-GSES 248

BLAST of Sed0025451 vs. TAIR 10
Match: AT2G37340.2 (arginine/serine-rich zinc knuckle-containing protein 33 )

HSP 1 Score: 176.4 bits (446), Expect = 3.7e-44
Identity = 138/283 (48.76%), Postives = 161/283 (56.89%), Query Frame = 0

Query: 50  EFSDPRDADDARYSLNGRDVHGSRIIVEIAKGVPRGPGGFREFGGSREFGGSRELGGRG- 109
           EF DPRDADDAR+ L+GRD  GSRI VE ++G PR               GSR+   RG 
Sbjct: 20  EFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPR---------------GSRDFDSRGP 79

Query: 110 PPGAGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRD-EYSRSPS 169
           PPGAGRCFNCG+DGHWARDC AGDWKNKCYRCGERGHIE+NC+NSPKKL+R   YSRSP 
Sbjct: 80  PPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPV 139

Query: 170 PRRGRSRSRSRSRSYSRGRSDSRHRSPV-KRERSVERSEKRSRSPRGRSSPRRHSLSPPP 229
             R   R RS SRS SR RS SR RSPV +RERSV   E+RSRSP+              
Sbjct: 140 RSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSV---EERSRSPKRMD----------- 199

Query: 230 SKAMKRSPSPSPDERSPEEARRSPSSGNRDSPRGRSRSPRGRSRSPMDEAEDFNGSEKRE 289
                       D  SP    RSP   +  SP+    SP    +   +   D +G    +
Sbjct: 200 ------------DSLSPRARDRSPVLDDEGSPKIIDGSPPPSPKLQKEVGSDRDGGSP-Q 259

Query: 290 ENGYSRSPSPL-----PREERSRSPVND--EDNDGSPRGGSES 323
           +NG +   SP+        +  RSPV+D  E N  SPR GSES
Sbjct: 260 DNGRNSVVSPVVGAGGDSSKEDRSPVDDDYEPNRTSPR-GSES 259

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038892927.15.9e-13785.32serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Benincasa hispida] ... [more]
XP_022942535.12.3e-13682.51serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Cucurbita moschata]... [more]
XP_008445806.11.9e-13585.15PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform X2 [Cucumis ... [more]
XP_022139066.13.3e-13580.69serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Momordica charantia... [more]
XP_004143594.15.6e-13585.11serine/arginine-rich splicing factor RS2Z32 isoform X2 [Cucumis sativus] >XP_004... [more]
Match NameE-valueIdentityDescription
Q9FYB75.3e-7258.82Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana OX=3702 GN=R... [more]
Q8VYA51.1e-6954.52Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana OX=3702 GN=R... [more]
Q231211.4e-1937.00Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis elegans OX=62... [more]
Q8VE972.9e-1737.50Serine/arginine-rich splicing factor 4 OS=Mus musculus OX=10090 GN=Srsf4 PE=2 SV... [more]
Q3B7L61.9e-1636.31Serine/arginine-rich splicing factor 6 OS=Bos taurus OX=9913 GN=SRSF6 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1FWH11.1e-13682.51serine/arginine-rich splicing factor RS2Z32-like isoform X1 OS=Cucurbita moschat... [more]
A0A1S3BDJ79.2e-13685.15serine/arginine-rich splicing factor RS2Z32-like isoform X2 OS=Cucumis melo OX=3... [more]
A0A6J1CET71.6e-13580.69serine/arginine-rich splicing factor RS2Z32-like isoform X1 OS=Momordica charant... [more]
A0A0A0KS312.7e-13585.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177110 PE=4 SV=1[more]
A0A6J1JVG45.1e-13483.23serine/arginine-rich splicing factor RS2Z32-like isoform X3 OS=Cucurbita maxima ... [more]
Match NameE-valueIdentityDescription
AT3G53500.23.8e-7358.82RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT2G37340.17.9e-7154.52arginine/serine-rich zinc knuckle-containing protein 33 [more]
AT3G53500.11.8e-5154.72RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT2G37340.33.8e-4950.17arginine/serine-rich zinc knuckle-containing protein 33 [more]
AT2G37340.23.7e-4448.76arginine/serine-rich zinc knuckle-containing protein 33 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 114..130
e-value: 2.9E-4
score: 30.1
coord: 136..152
e-value: 0.0022
score: 27.3
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 114..129
e-value: 2.2E-6
score: 27.5
coord: 135..151
e-value: 1.9E-4
score: 21.4
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 136..152
score: 10.575755
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 114..129
score: 10.147202
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 12..77
e-value: 3.3E-19
score: 79.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 13..74
e-value: 2.4E-14
score: 52.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 11..81
score: 17.216459
NoneNo IPR availableGENE3D4.10.60.10coord: 134..178
e-value: 6.4E-6
score: 27.7
coord: 106..133
e-value: 4.9E-6
score: 28.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 297..316
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..323
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..290
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 6..302
NoneNo IPR availablePANTHERPTHR23147:SF152SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33coord: 6..302
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..86
e-value: 2.8E-22
score: 80.8
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 106..153
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 9..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0025451.1Sed0025451.1mRNA
Sed0025451.2Sed0025451.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding