Sed0025365 (gene) Chayote v1

Overview


Name	Sed0025365
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Photosystem II CP43 reaction center protein
Location	Contig00297: 159021 .. 160294 (-)
RNA-Seq Expression	Sed0025365
Synteny	Sed0025365

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCTCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCCGGTGGGGAAGTTATAGACACCTTTCCGTACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCCGCAGTGTTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCATTCTTCGGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTGGGTATTCACTTAATTTTGTTAGGTCTAGGTGCTTTTCTTCTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCCCGGGGGATGTACGAAAAATTACCAACTTGACCCTTAGCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGAGGAGAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGATCCGCTCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTTATTTTGGGGAGAGACTATGCGTTTTTGGGATCTCCGTGTTCTTTGGTTAGAACCACTAAGGGGTCCTAATGGTTTAGACTTGAGTAGGCTGAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCCCTTTAGGTTCTTTAAATTCCGTGGGTGGTGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTTTCTGTGCAGCGGCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGACTCTCTTAACTGAGACAGCAGATCTAATGCTTGAAGTCAAAATCAATTTGATTCCACCATACATATCAGGTTGA

mRNA sequence

ATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCTCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCCGGTGGGGAAGTTATAGACACCTTTCCGTACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCCGCAGTGTTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCATTCTTCGGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTGGGTATTCACTTAATTTTGTTAGGTCTAGGTGCTTTTCTTCTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCCCGGGGGATCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGAGGAGAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGACTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGATCCGCTCAAGGACCTACTGAAGTTATTTTGGGGAGAGACTATGCGTTTTTGGGATCTCCGTGTTCTTTGGTTAGAACCACTAAGGGGTCCTAATGGTTTAGACTTGAGTTCTTTAAATTCCGTGGGTGGTGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTTTCTGTGCAGCGGCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGACTCTCTTAACTGAGACAGCAGATCTAATGCTTGAAGTCAAAATCAATTTGATTCCACCATACATATCAGGTTGA

Coding sequence (CDS)

ATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCTCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCCGGTGGGGAAGTTATAGACACCTTTCCGTACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCCGCAGTGTTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCATTCTTCGGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTGGGTATTCACTTAATTTTGTTAGGTCTAGGTGCTTTTCTTCTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCCCGGGGGATCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGAGGAGAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGACTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGATCCGCTCAAGGACCTACTGAAGTTATTTTGGGGAGAGACTATGCGTTTTTGGGATCTCCGTGTTCTTTGGTTAGAACCACTAAGGGGTCCTAATGGTTTAGACTTGAGTTCTTTAAATTCCGTGGGTGGTGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTTTCTGTGCAGCGGCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGACTCTCTTAACTGAGACAGCAGATCTAATGCTTGAAGTCAAAATCAATTTGATTCCACCATACATATCAGGTTGA

Protein sequence

MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVYDTWARGIPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPTSQAQAFTFLVRDQRLGANVDPLKDLLKLFWGETMRFWDLRVLWLEPLRGPNGLDLSSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRAFCAAAAGFEKGIDRDFEPVLFMTLLTETADLMLEVKINLIPPYISG

Homology

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BLAST of Sed0025365 vs. NCBI nr
Match: CAB4072161.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 642.5 bits (1656), Expect = 2.2e-180
Identity = 331/416 (79.57%), Postives = 339/416 (81.49%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PS+IFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSL A+SVFGFIACCFVWFNNTAYP+       
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLAAISVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 358
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

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BLAST of Sed0025365 vs. NCBI nr
Match: YP_009751649.1 (photosystem II 43 kDa protein [Hodgsonia heteroclita] >YP_009752155.1 photosystem II 43 kDa protein [Linnaeosicyos amara] >YP_009752577.1 photosystem II 43 kDa protein [Trichosanthes homophylla] >YP_009753254.1 photosystem II 43 kDa protein [Nothoalsomitra suberosa] >YP_009753616.1 photosystem II 43 kDa protein [Trichosanthes wallichiana] >YP_009753785.1 photosystem II 43 kDa protein [Trichosanthes pilosa] >YP_009753870.1 photosystem II 43 kDa protein [Trichosanthes lobata] >QIT05058.1 photosystem II 43 kDa protein [Trichosanthes kirilowii] >QIT04382.1 photosystem II 43 kDa protein [Hodgsonia heteroclita] >QIT04635.1 photosystem II 43 kDa protein [Trichosanthes wallichiana] >QIT04973.1 photosystem II 43 kDa protein [Trichosanthes homophylla] >QIT05565.1 photosystem II 43 kDa protein [Linnaeosicyos amara])

HSP 1 Score: 640.6 bits (1651), Expect = 8.5e-180
Identity = 332/407 (81.57%), Postives = 336/407 (82.56%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 61  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 120

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 121 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 180

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL
Sbjct: 181 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 240

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYP+       
Sbjct: 241 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 300

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 301 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 360

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 349
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 361 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 420

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BLAST of Sed0025365 vs. NCBI nr
Match: YP_009525182.1 (photosystem II CP43 chlorophyll apoprotein [Hodgsonia macrocarpa] >YP_009945413.1 photosystem II CP43 chlorophyll apoprotein [Sechium edule] >QJD26292.1 PsbC [Trichosanthes kirilowii] >QJD26467.1 PsbC [Trichosanthes kirilowii var. japonica] >QJD26641.1 PsbC [Trichosanthes rosthornii] >QKX48469.1 photosystem II CP43 chlorophyll apoprotein [Luffa acutangula] >QKX48555.1 photosystem II CP43 chlorophyll apoprotein [Luffa aegyptiaca])

HSP 1 Score: 640.6 bits (1651), Expect = 8.5e-180
Identity = 332/407 (81.57%), Postives = 336/407 (82.56%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 186

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYP+       
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 349
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0025365 vs. NCBI nr
Match: YP_009560831.1 (PsbC [Trichosanthes kirilowii] >YP_009752239.1 photosystem II 43 kDa protein [Trichosanthes baviensis] >YP_009752408.1 photosystem II 43 kDa protein [Trichosanthes tricuspidata] >YP_009753701.1 photosystem II 43 kDa protein [Trichosanthes nervifolia] >QIT04046.1 photosystem II 43 kDa protein [Luffa aegyptiaca] >QIT04129.1 photosystem II 43 kDa protein [Sechium edule] >QAB33186.1 PsbC [Trichosanthes kirilowii] >QIT04213.1 photosystem II 43 kDa protein [Trichosanthes baviensis] >QIT04804.1 photosystem II 43 kDa protein [Trichosanthes tricuspidata])

HSP 1 Score: 640.6 bits (1651), Expect = 8.5e-180
Identity = 332/407 (81.57%), Postives = 336/407 (82.56%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 55  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 114

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 115 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 174

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL
Sbjct: 175 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 234

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYP+       
Sbjct: 235 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 294

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 295 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 354

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 349
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 355 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 414

[Close]

BLAST of Sed0025365 vs. NCBI nr
Match: YP_009751902.1 (photosystem II 43 kDa protein [Cyclanthera pedata] >QIT04720.1 photosystem II 43 kDa protein [Cyclanthera pedata])

HSP 1 Score: 640.2 bits (1650), Expect = 1.1e-179
Identity = 331/407 (81.33%), Postives = 336/407 (82.56%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 55  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 114

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGG+Y
Sbjct: 115 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGIY 174

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL
Sbjct: 175 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 234

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYP+       
Sbjct: 235 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 294

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 295 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 354

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 349
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 355 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 414

[Close]

BLAST of Sed0025365 vs. ExPASy Swiss-Prot
Match: Q2QD93 (Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC PE=3 SV=1)

HSP 1 Score: 639.4 bits (1648), Expect = 2.5e-182
Identity = 330/407 (81.08%), Postives = 336/407 (82.56%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYP+       
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGAN+          K L++      +F GETMRFWDLR  WL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANIGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 349
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0025365 vs. ExPASy Swiss-Prot
Match: B1NWE6 (Photosystem II CP43 reaction center protein OS=Manihot esculenta OX=3983 GN=psbC PE=3 SV=1)

HSP 1 Score: 636.3 bits (1640), Expect = 2.1e-181
Identity = 329/407 (80.84%), Postives = 335/407 (82.31%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYP+       
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 349
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0025365 vs. ExPASy Swiss-Prot
Match: A1XFV1 (Photosystem II CP43 reaction center protein OS=Nuphar advena OX=77108 GN=psbC PE=3 SV=1)

HSP 1 Score: 636.3 bits (1640), Expect = 2.1e-181
Identity = 327/407 (80.34%), Postives = 334/407 (82.06%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEV+DTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVVDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 186

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PS+IFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICIL
Sbjct: 187 DTWAPGGGDVRRITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRA VWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYP+       
Sbjct: 247 GGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 349
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0025365 vs. ExPASy Swiss-Prot
Match: Q2VEI0 (Photosystem II CP43 reaction center protein OS=Solanum tuberosum OX=4113 GN=psbC PE=3 SV=1)

HSP 1 Score: 636.3 bits (1640), Expect = 2.1e-181
Identity = 327/407 (80.34%), Postives = 335/407 (82.31%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PS+IFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGAL+VFGFIACCFVWFNNTAYP+       
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALAVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 349
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0025365 vs. ExPASy Swiss-Prot
Match: Q68S10 (Photosystem II CP43 reaction center protein OS=Panax ginseng OX=4054 GN=psbC PE=3 SV=1)

HSP 1 Score: 636.0 bits (1639), Expect = 2.7e-181
Identity = 328/407 (80.59%), Postives = 335/407 (82.31%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PS+IFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYP+       
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 349
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0025365 vs. ExPASy TrEMBL
Match: A0A6S7KQP6 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS1097 PE=3 SV=1)

HSP 1 Score: 642.5 bits (1656), Expect = 1.1e-180
Identity = 331/416 (79.57%), Postives = 339/416 (81.49%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PS+IFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSL A+SVFGFIACCFVWFNNTAYP+       
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLAAISVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 358
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0025365 vs. ExPASy TrEMBL
Match: A0A6M3RWB3 (Photosystem II CP43 reaction center protein OS=Trichosanthes kirilowii OX=3677 GN=psbC PE=3 SV=1)

HSP 1 Score: 640.6 bits (1651), Expect = 4.1e-180
Identity = 332/407 (81.57%), Postives = 336/407 (82.56%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 186

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYP+       
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 349
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0025365 vs. ExPASy TrEMBL
Match: A0A6M3RTR9 (Photosystem II CP43 reaction center protein OS=Trichosanthes kirilowii var. japonica OX=61011 GN=psbC PE=3 SV=1)

HSP 1 Score: 640.6 bits (1651), Expect = 4.1e-180
Identity = 332/407 (81.57%), Postives = 336/407 (82.56%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 186

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYP+       
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 349
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0025365 vs. ExPASy TrEMBL
Match: A0A346QNW2 (Photosystem II CP43 reaction center protein OS=Hodgsonia macrocarpa OX=2184935 GN=psbC PE=3 SV=1)

HSP 1 Score: 640.6 bits (1651), Expect = 4.1e-180
Identity = 332/407 (81.57%), Postives = 336/407 (82.56%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 186

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYP+       
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 349
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0025365 vs. ExPASy TrEMBL
Match: A0A6H0EPV8 (Photosystem II CP43 reaction center protein OS=Hodgsonia heteroclita OX=386184 GN=psbC PE=3 SV=1)

HSP 1 Score: 640.6 bits (1651), Expect = 4.1e-180
Identity = 332/407 (81.57%), Postives = 336/407 (82.56%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 61  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 120

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 121 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 180

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL
Sbjct: 181 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 240

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYP+       
Sbjct: 241 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 300

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 301 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 360

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 349
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 361 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 420

[Close]

BLAST of Sed0025365 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 627.9 bits (1618), Expect = 5.3e-180
Identity = 325/407 (79.85%), Postives = 332/407 (81.57%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAFLLVFKALYFGGVY 186

Query: 121 DTWARG------------IPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 180
           DTWA G             PSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICI 
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIF 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPT------- 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSL ALSV GFIACCFVWFNNTAYP+       
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLAALSVCGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 ---SQAQAFTFLVRDQRLGANVDPL-------KDLLK------LFWGETMRFWDLRVLWL 300
              SQAQAFTFLVRDQRLGANV          K L++      +F GETMRFWDLR  WL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLS------------------------SLNSVGGVATEINAVNYVSPRSWL 349
           EPLRGPNGLDLS                        SLNSVGGVATEINAVNYVSPRSWL
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

The following BLAST results are available for this feature:

BLAST of Sed0025365 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB4072161.1	2.2e-180	79.57	unnamed protein product [Lactuca saligna]	[more]
YP_009751649.1	8.5e-180	81.57	photosystem II 43 kDa protein [Hodgsonia heteroclita] >YP_009752155.1 photosyste...	[more]
YP_009525182.1	8.5e-180	81.57	photosystem II CP43 chlorophyll apoprotein [Hodgsonia macrocarpa] >YP_009945413....	[more]
YP_009560831.1	8.5e-180	81.57	PsbC [Trichosanthes kirilowii] >YP_009752239.1 photosystem II 43 kDa protein [Tr...	[more]
YP_009751902.1	1.1e-179	81.33	photosystem II 43 kDa protein [Cyclanthera pedata] >QIT04720.1 photosystem II 43...	[more]

BLAST of Sed0025365 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD93	2.5e-182	81.08	Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC P...	[more]
B1NWE6	2.1e-181	80.84	Photosystem II CP43 reaction center protein OS=Manihot esculenta OX=3983 GN=psbC...	[more]
A1XFV1	2.1e-181	80.34	Photosystem II CP43 reaction center protein OS=Nuphar advena OX=77108 GN=psbC PE...	[more]
Q2VEI0	2.1e-181	80.34	Photosystem II CP43 reaction center protein OS=Solanum tuberosum OX=4113 GN=psbC...	[more]
Q68S10	2.7e-181	80.59	Photosystem II CP43 reaction center protein OS=Panax ginseng OX=4054 GN=psbC PE=...	[more]

BLAST of Sed0025365 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6S7KQP6	1.1e-180	79.57	Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS1097 PE=3 SV=1	[more]
A0A6M3RWB3	4.1e-180	81.57	Photosystem II CP43 reaction center protein OS=Trichosanthes kirilowii OX=3677 G...	[more]
A0A6M3RTR9	4.1e-180	81.57	Photosystem II CP43 reaction center protein OS=Trichosanthes kirilowii var. japo...	[more]
A0A346QNW2	4.1e-180	81.57	Photosystem II CP43 reaction center protein OS=Hodgsonia macrocarpa OX=2184935 G...	[more]
A0A6H0EPV8	4.1e-180	81.57	Photosystem II CP43 reaction center protein OS=Hodgsonia heteroclita OX=386184 G...	[more]

BLAST of Sed0025365 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00280.1	5.3e-180	79.85	photosystem II reaction center protein C	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044900	Photosystem II CP43 reaction centre protein superfamily	GENE3D	1.10.10.670	photosystem ii from thermosynechococcus elongatus	coord: 216..296 e-value: 1.9E-14 score: 55.1
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 1..221 e-value: 8.2E-65 score: 219.4 coord: 276..344 e-value: 2.5E-22 score: 79.2
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..280
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 276..346
None	No IPR available	PANTHER	PTHR33180:SF16	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..280
None	No IPR available	PANTHER	PTHR33180:SF16	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 276..346
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 1..347

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025365.1	Sed0025365.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0010242	oxygen evolving activity