Sed0025354 (gene) Chayote v1

Overview


Name	Sed0025354
Type	gene
Organism	Sechium edule (Chayote v1)
Description	SBP (S-ribonuclease binding protein) family protein
Location	LG01: 1497245 .. 1498297 (-)
RNA-Seq Expression	Sed0025354
Synteny	Sed0025354

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCTCCCTCATTAAACTCCAATTCTAGAGAGAGAAACCCCCCACAGCTTTCTCTCTCCTCTTTTCTCTATAAATACCCCCTGACCCCACTTTATTTTCCTTATCGTCCTTCTAAACCATTTCATAATTCTCACCGTACTCTCTGCAACAGATACTAAATATCAGAGAATCACCATATTCTTCACACCAAACGAATCGGAATCTGAATCGGTTAATTCGTTTGAAATGGCCATTCAATTGCAGTGGCAGCGCCGGAATTTCGGCCTTCCTTGCAACTCCGCCGCCGAGTTTCATCATCTTCATTCTGATGATCACCGTCTTCAACCTGTAGACGGAATGTCCACTCAATCTGTGCAGCCTCAGAATAATAACGCCTCTTCCATGGCGGAAATGTCGACCGATCAGATCGATCGGTTCCTCCGATTGCAGGTATGTTGTATGTGCGCTTTGTTTTTCTCTGCGATTTTACTTCAATCGGAAGGTGTTTTACTGTTTACATCGCTTTCGTTTTGATTCTTGATTTTCTTTTGCTTCTTTCTGTTCCAGAGCGAAAGATTTAGATTCCTCCTGCAATACAGAAGGAATCAACAGTTCGGTGTGTTGCTGCGCCAGATCGAAGCGAGAACGCGCGTTCTGTTTCAGCAGAAGGACGAGGAGATTGCGGTTGCGAAGAGGAGGAGAATCGATCTCGAGCAGTTGTTGACGAGGTTTCAAATGGAGAATCAAGAACGGATGAGATCCGTACAAGAGAATCAAGCGAAGGTTGCGTCGCTCAGCCACGCGCTCGATCAGATCAGAGATCGGCGTTCATCCTGCGAAAACGACGCCGAATCAAACAACAACAGAATCGGAGAAGACGACGCCATTGATTGCGGAAACAAGCGGATCAAGAAGAAAACGATGATTTGCCGAATCTGCAACTCTCGAATTTCGTGTATGCTGTTCTTACCTTGCAGGCATCTCTGTTCGTGTAAGTCATGCGAGATTGATCTCGATTCTTGCCCCGTCTGCAACACGACGAAGAAGGCCAGCATCGAGGCTGTGATTTTCTAG

mRNA sequence

CGCCTCCCTCATTAAACTCCAATTCTAGAGAGAGAAACCCCCCACAGCTTTCTCTCTCCTCTTTTCTCTATAAATACCCCCTGACCCCACTTTATTTTCCTTATCGTCCTTCTAAACCATTTCATAATTCTCACCGTACTCTCTGCAACAGATACTAAATATCAGAGAATCACCATATTCTTCACACCAAACGAATCGGAATCTGAATCGGTTAATTCGTTTGAAATGGCCATTCAATTGCAGTGGCAGCGCCGGAATTTCGGCCTTCCTTGCAACTCCGCCGCCGAGTTTCATCATCTTCATTCTGATGATCACCGTCTTCAACCTGTAGACGGAATGTCCACTCAATCTGTGCAGCCTCAGAATAATAACGCCTCTTCCATGGCGGAAATGTCGACCGATCAGATCGATCGGTTCCTCCGATTGCAGAGCGAAAGATTTAGATTCCTCCTGCAATACAGAAGGAATCAACAGTTCGGTGTGTTGCTGCGCCAGATCGAAGCGAGAACGCGCGTTCTGTTTCAGCAGAAGGACGAGGAGATTGCGGTTGCGAAGAGGAGGAGAATCGATCTCGAGCAGTTGTTGACGAGGTTTCAAATGGAGAATCAAGAACGGATGAGATCCGTACAAGAGAATCAAGCGAAGGTTGCGTCGCTCAGCCACGCGCTCGATCAGATCAGAGATCGGCGTTCATCCTGCGAAAACGACGCCGAATCAAACAACAACAGAATCGGAGAAGACGACGCCATTGATTGCGGAAACAAGCGGATCAAGAAGAAAACGATGATTTGCCGAATCTGCAACTCTCGAATTTCGTGTATGCTGTTCTTACCTTGCAGGCATCTCTGTTCGTGTAAGTCATGCGAGATTGATCTCGATTCTTGCCCCGTCTGCAACACGACGAAGAAGGCCAGCATCGAGGCTGTGATTTTCTAG

Coding sequence (CDS)

ATGGCCATTCAATTGCAGTGGCAGCGCCGGAATTTCGGCCTTCCTTGCAACTCCGCCGCCGAGTTTCATCATCTTCATTCTGATGATCACCGTCTTCAACCTGTAGACGGAATGTCCACTCAATCTGTGCAGCCTCAGAATAATAACGCCTCTTCCATGGCGGAAATGTCGACCGATCAGATCGATCGGTTCCTCCGATTGCAGAGCGAAAGATTTAGATTCCTCCTGCAATACAGAAGGAATCAACAGTTCGGTGTGTTGCTGCGCCAGATCGAAGCGAGAACGCGCGTTCTGTTTCAGCAGAAGGACGAGGAGATTGCGGTTGCGAAGAGGAGGAGAATCGATCTCGAGCAGTTGTTGACGAGGTTTCAAATGGAGAATCAAGAACGGATGAGATCCGTACAAGAGAATCAAGCGAAGGTTGCGTCGCTCAGCCACGCGCTCGATCAGATCAGAGATCGGCGTTCATCCTGCGAAAACGACGCCGAATCAAACAACAACAGAATCGGAGAAGACGACGCCATTGATTGCGGAAACAAGCGGATCAAGAAGAAAACGATGATTTGCCGAATCTGCAACTCTCGAATTTCGTGTATGCTGTTCTTACCTTGCAGGCATCTCTGTTCGTGTAAGTCATGCGAGATTGATCTCGATTCTTGCCCCGTCTGCAACACGACGAAGAAGGCCAGCATCGAGGCTGTGATTTTCTAG

Protein sequence

MAIQLQWQRRNFGLPCNSAAEFHHLHSDDHRLQPVDGMSTQSVQPQNNNASSMAEMSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLLRQIEARTRVLFQQKDEEIAVAKRRRIDLEQLLTRFQMENQERMRSVQENQAKVASLSHALDQIRDRRSSCENDAESNNNRIGEDDAIDCGNKRIKKKTMICRICNSRISCMLFLPCRHLCSCKSCEIDLDSCPVCNTTKKASIEAVIF

Homology

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BLAST of Sed0025354 vs. NCBI nr
Match: XP_038902052.1 (probable BOI-related E3 ubiquitin-protein ligase 3 [Benincasa hispida])

HSP 1 Score: 285.8 bits (730), Expect = 3.4e-73
Identity = 171/243 (70.37%), Postives = 188/243 (77.37%), Query Frame = 0


Query: 1   MAIQLQWQRRNFG-LPCNS--AAEFHHL-HSDDHRLQPVDGMSTQSVQPQNNNASSMAEM 60
           MAIQLQ QRRNFG LP +S  A +FH L H + H LQP    + QS     +  S + EM
Sbjct: 1   MAIQLQLQRRNFGLLPSDSTPADQFHQLFHPNHHPLQP---GNAQSSSDDLHTLSFLPEM 60

Query: 61  STDQIDRFLRLQSERFRFLLQYRRNQQFGVLLRQIEARTRVLFQQKDEEIAVAKRRRIDL 120
           STDQIDR +RLQSERFR LL ++ NQ+ GVLL QIE RTRVLFQQKDEEIA A  R+I L
Sbjct: 61  STDQIDRLIRLQSERFRVLLHHKINQEIGVLLNQIETRTRVLFQQKDEEIANANVRKIHL 120

Query: 121 EQLLTRFQMENQERMRSVQENQAKVASLSHALDQIRDRRSSCENDAES--NNNRIGEDDA 180
           EQLLTR QMENQER R+VQENQA VASLSHAL+QIR+R SSC NDAES  NNNR GEDDA
Sbjct: 121 EQLLTRLQMENQERKRAVQENQAMVASLSHALNQIRERLSSCANDAESNNNNNRDGEDDA 180

Query: 181 IDCGNKR-IKKKTMICRICNSRISCMLFLPCRHLCSCKSCEIDLDSCPVCNTTKKASIEA 237
           ID G KR  KK  MIC+ICNSRISC+L LPCRHLCSCK CE  L+ CPVCNTTKKASIEA
Sbjct: 181 IDYGKKRKTKKMMMICQICNSRISCVLLLPCRHLCSCKPCESTLEFCPVCNTTKKASIEA 240

[Close]

BLAST of Sed0025354 vs. NCBI nr
Match: XP_022146109.1 (probable BOI-related E3 ubiquitin-protein ligase 2 [Momordica charantia])

HSP 1 Score: 282.7 bits (722), Expect = 2.9e-72
Identity = 168/242 (69.42%), Postives = 181/242 (74.79%), Query Frame = 0


Query: 1   MAIQLQWQRRNFGLPCNSAAEFHH-----LHSDDHRLQPVDGMSTQSVQPQNNNASSMAE 60
           MAIQLQ QRRNFGLP +S A+ H      L S +H L              ++ AS MAE
Sbjct: 1   MAIQLQLQRRNFGLPFDSPAQLHQFRPNILQSGEHNL--------LCRSDHSHAASLMAE 60

Query: 61  MSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLLRQIEARTRVLFQQKDEEIAVAKRRRID 120
           M TD +DRF+RLQSERFR LLQ +RNQQ GVLL QIE RTRVLFQQKDEEIA A  RRI+
Sbjct: 61  MPTDHMDRFIRLQSERFRLLLQQKRNQQIGVLLNQIETRTRVLFQQKDEEIARANNRRIE 120

Query: 121 LEQLLTRFQMENQERMRSVQENQAKVASLSHALDQIRDRRSSCEN-DAESNNNRIGEDDA 180
           LEQ LTR QMENQER R+VQENQA VASLSHAL+QIR+R SS  N DAESNNN  GEDDA
Sbjct: 121 LEQFLTRLQMENQERQRAVQENQAVVASLSHALEQIRERISSGANDDAESNNNVGGEDDA 180

Query: 181 IDCGNKRIKKKTMICRICNSRISCMLFLPCRHLCSCKSCEIDLDSCPVCNTTKKASIEAV 237
           ID G KR     MICRICNSRISC+LFLPCRHLCSCK CE  LD CPVCN TKKASIEAV
Sbjct: 181 IDRGKKR-----MICRICNSRISCVLFLPCRHLCSCKPCESGLDFCPVCNATKKASIEAV 229

[Close]

BLAST of Sed0025354 vs. NCBI nr
Match: XP_004147074.1 (probable BOI-related E3 ubiquitin-protein ligase 3 isoform X1 [Cucumis sativus] >KGN61937.1 hypothetical protein Csa_006158 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 2.8e-67
Identity = 162/269 (60.22%), Postives = 181/269 (67.29%), Query Frame = 0


Query: 1   MAIQLQWQRRNFGLPCNSAAE------------FHHL--------------HSDDHRLQP 60
           MAIQLQ  RRNFGL    +++             HHL              ++DDH L  
Sbjct: 1   MAIQLQLHRRNFGLDSTPSSDHQFHQLFHLLNHHHHLLLQPPDHAAQSGTNNNDDHLLLL 60

Query: 61  VDGMSTQSVQPQNNNASSMAEMSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLLRQIEAR 120
               S        +  S ++EM  D IDRF+RLQSERFR LLQ + NQQ GVLL QIE R
Sbjct: 61  QQYYSLTQSDFHQSLTSFLSEMPADHIDRFIRLQSERFRLLLQQKINQQIGVLLNQIETR 120

Query: 121 TRVLFQQKDEEIAVAKRRRIDLEQLLTRFQMENQERMRSVQENQAKVASLSHALDQIRDR 180
           TRVLFQQKDEEIA A  RR+ LEQLLTR QMENQER +SVQENQA VASLS AL+QIR++
Sbjct: 121 TRVLFQQKDEEIACANMRRMHLEQLLTRLQMENQERKKSVQENQAMVASLSRALNQIREK 180

Query: 181 RSSCENDAESNNN------RIGEDDAIDCG-NKRIKKKTMICRICNSRISCMLFLPCRHL 237
            S C NDAESNNN      R GEDDAID G  K+ KKK MIC+ICNSR+SC+L LPCRHL
Sbjct: 181 VSLCANDAESNNNNNSNNYRNGEDDAIDYGKKKKKKKKMMICKICNSRVSCVLLLPCRHL 240

[Close]

BLAST of Sed0025354 vs. NCBI nr
Match: XP_008457700.1 (PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Cucumis melo])

HSP 1 Score: 263.8 bits (673), Expect = 1.4e-66
Identity = 163/273 (59.71%), Postives = 185/273 (67.77%), Query Frame = 0


Query: 1   MAIQLQWQRRNFGLPCNSAA---------EFHHL-HSDDHR---LQPVDGMSTQSVQPQN 60
           MAIQLQ   R+FG+   +A          +FH L H  +H    LQP +      +   N
Sbjct: 1   MAIQLQLHSRDFGIHSTTAPPPPSSSSDHQFHQLCHLLNHHHLLLQPREDHHAAQISGNN 60

Query: 61  NN-------------------ASSMAEMSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLL 120
           N+                   +S ++EM +D IDRF+RLQSERFR LLQ + NQQ GVLL
Sbjct: 61  NDHLLLLQQYCLTQSDLHQSLSSFVSEMPSDHIDRFIRLQSERFRLLLQQKINQQIGVLL 120

Query: 121 RQIEARTRVLFQQKDEEIAVAKRRRIDLEQLLTRFQMENQERMRSVQENQAKVASLSHAL 180
            QIE RTRVLFQQKDEEIA A  RRI LEQLLTR QMENQER +SVQENQA VASLS AL
Sbjct: 121 NQIETRTRVLFQQKDEEIACANMRRIHLEQLLTRLQMENQERKKSVQENQAMVASLSRAL 180

Query: 181 DQIRDRRSSCENDAESNNN----RIGEDDAIDCG-NKRIKKKTMICRICNSRISCMLFLP 237
           +QIR++ S C NDAESNNN    R GEDDAID G  K+ KKK MIC+ICNSR+SC+L LP
Sbjct: 181 NQIREKVSLCANDAESNNNNNNYRNGEDDAIDYGKTKKKKKKMMICKICNSRVSCVLLLP 240

[Close]

BLAST of Sed0025354 vs. NCBI nr
Match: XP_022943834.1 (probable BOI-related E3 ubiquitin-protein ligase 2 isoform X1 [Cucurbita moschata] >KAG7010849.1 BOI-related E3 ubiquitin-protein ligase 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259.6 bits (662), Expect = 2.6e-65
Identity = 154/244 (63.11%), Postives = 181/244 (74.18%), Query Frame = 0


Query: 1   MAIQLQWQRRNFGLPCNSAAEFHHLHSDDHRLQPVDGMSTQSVQPQNNNASS------MA 60
           MAIQLQ Q+RNFG P +SAAEFH        LQ  +G S+  +  +  + S       +A
Sbjct: 1   MAIQLQLQQRNFGRPLDSAAEFH------RHLQLGNGQSSLLLSQECWSKSDSRIDNFVA 60

Query: 61  EMSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLLRQIEARTRVLFQQKDEEIAVAKRRRI 120
           EMS DQIDRF+RL+SERFR LLQ++ NQQ  VLL QIE RTRVLFQQKDEEIA    R I
Sbjct: 61  EMSVDQIDRFIRLESERFRLLLQHKINQQIRVLLNQIENRTRVLFQQKDEEIASTNMRTI 120

Query: 121 DLEQLLTRFQMENQERMRSVQENQAKVASLSHALDQIRDRRSSCENDAESNNN--RIGED 180
            LEQLL + +MENQ+R R+V+ENQA VASLSHALD++R++  +  NDAES+NN  RIGED
Sbjct: 121 QLEQLLKKLEMENQKRKRAVEENQAMVASLSHALDEMREKLLASANDAESSNNNVRIGED 180

Query: 181 DAIDCG-NKRIKKKTMICRICNSRISCMLFLPCRHLCSCKSCEIDLDSCPVCNTTKKASI 236
           DA D G NK+ KK  MIC+ICNSRISC+L LPCRHLCSCKSC   L+ CPVCN TKKASI
Sbjct: 181 DASDFGNNKKRKKMRMICQICNSRISCVLLLPCRHLCSCKSCASALEFCPVCNATKKASI 238

[Close]

BLAST of Sed0025354 vs. ExPASy Swiss-Prot
Match: F4IDI6 (Probable BOI-related E3 ubiquitin-protein ligase 2 OS=Arabidopsis thaliana OX=3702 GN=BRG2 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-10
Identity = 70/251 (27.89%), Postives = 112/251 (44.62%), Query Frame = 0


Query: 17  NSAAEFHHLHSDDHRLQPVDGMSTQ-------SVQPQNNNASSMAEMSTDQIDRFLRL-- 76
           +S + +HHL   + R       +T        S   Q+ + SS       +IDRF+ L  
Sbjct: 105 SSRSNYHHLLLQNPRSSSCVNAATTTTTTTLFSFLGQDIDISSHMNQQQHEIDRFVSLHL 164

Query: 77  -QSERFRFLLQYRRNQQFGVLLRQIEARTRVLFQQKDEEIAVAKRRRIDLEQLLTRFQME 136
            Q ER ++ ++ +R +Q   ++  IE       + K+EE     +    LE+ +    +E
Sbjct: 165 YQMERVKYEIEEKRKRQARTIMEAIEQGLVKRLRVKEEERERIGKVNHALEERVKSLSIE 224

Query: 137 NQERMRSVQENQAKV----ASLSHALDQIRD--------RRSSCENDAES---------- 196
           NQ      Q N+A       +L H L Q++D        +  + E+DAES          
Sbjct: 225 NQIWRDLAQTNEATANHLRTNLEHVLAQVKDVSRGAGLEKNMNEEDDAESCCGSSCGGGG 284

Query: 197 ---NNNRIG-EDDAIDCGNKRIKKKTMICRICNSRISCMLFLPCRHLCSCKSCEIDLDSC 232
                 R+G E +A D   K  +++  +CR C    SC+L LPCRHLC C  C   + +C
Sbjct: 285 EETVRRRVGLEREAQD---KAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCGSSVHTC 344

[Close]

BLAST of Sed0025354 vs. ExPASy Swiss-Prot
Match: Q9LDD1 (Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana OX=3702 GN=BRG3 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-08
Identity = 56/199 (28.14%), Postives = 88/199 (44.22%), Query Frame = 0


Query: 51  SSMAEMSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLLRQIEARTRVLFQQKDEEIAVAK 110
           SS  +     IDR +    ER R  ++ +R  Q   ++  +E       + KD+EI    
Sbjct: 131 SSNVQQHHFDIDRLISNHVERMRMEIEEKRKTQGRRIVEAVEQGLMKTLRAKDDEINHIG 190

Query: 111 RRRIDLEQLLTRFQMENQERMRSVQENQAKVASLSHALDQI-----RDRRSSCENDAESN 170
           +  + LE+ +    +ENQ      Q N+A V +L   L Q+     R+R       A+  
Sbjct: 191 KLNLFLEEKVKSLCVENQIWRDVAQSNEATVNALRSNLQQVLAAVERNRWEEPPTVADDA 250

Query: 171 NNRIGEDDAIDCGNKRIK--------KK-----TMICRICNSRISCMLFLPCRHLCSCKS 230
            +  G +D  D   +R K        KK       +CR C    + +L LPCRH+C C  
Sbjct: 251 QSCCGSNDEGDSEEERWKLAGEAQDTKKMCRVGMSMCRSCGKGEASVLLLPCRHMCLCSV 310

Query: 231 CEIDLDSCPVCNTTKKASI 232
           C   L++CP+C + K AS+
Sbjct: 311 CGSSLNTCPICKSPKTASL 329

[Close]

BLAST of Sed0025354 vs. ExPASy Swiss-Prot
Match: O81851 (E3 ubiquitin-protein ligase BOI OS=Arabidopsis thaliana OX=3702 GN=BOI PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-07
Identity = 53/190 (27.89%), Postives = 87/190 (45.79%), Query Frame = 0


Query: 51  SSMAEMSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLLRQIEARTRVLFQQKDEEIAVAK 110
           S +      +IDRF+  Q+E+ R  ++ R+  Q  +L   ++       ++KD+EI   +
Sbjct: 113 SQIQNQQQSEIDRFVAQQTEKLRIEIEARQQTQTRMLASAVQNVIAKKLKEKDDEIVRIR 172

Query: 111 RRRIDLEQLLTRFQMENQERMRSVQENQAKVASLSHALDQIRDRRSS-------CENDAE 170
                L++ +    +ENQ      Q N+A   +L   LDQ+  +  +        E+DAE
Sbjct: 173 NLNWVLQERVKSLYVENQIWRDIAQTNEANANTLRTNLDQVLAQLETFPTASAVVEDDAE 232

Query: 171 SNNNRIGEDDAIDCGNKRIKKKTMICRICNSRISCMLFLPCRHLCSCKSC--EIDLDSCP 230
           S+      D     G + +      C+ C  R + +L LPCRHLC C  C     L +CP
Sbjct: 233 SSCGSCCGDG----GGEAVTAVGGGCKRCGEREASVLVLPCRHLCLCTVCGGSALLRTCP 292

Query: 231 VCNTTKKASI 232
           VC+    AS+
Sbjct: 293 VCDMVMNASV 298

[Close]

BLAST of Sed0025354 vs. ExPASy Swiss-Prot
Match: Q9FHE4 (BOI-related E3 ubiquitin-protein ligase 1 OS=Arabidopsis thaliana OX=3702 GN=BRG1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05
Identity = 54/189 (28.57%), Postives = 86/189 (45.50%), Query Frame = 0


Query: 52  SMAEMSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLLRQIEARTRVLFQQKDEEIAVAKR 111
           S  +    +IDRF+  Q+E  R  L+ R+  Q  +L   ++       + KDEEI    +
Sbjct: 104 SQIQQQNSEIDRFVAQQTETLRIELEARQRTQTRMLASAVQNAILKKLKAKDEEIIRMGK 163

Query: 112 RRIDLEQLLTRFQMENQERMRSVQENQAKVASLSHALDQIRDRRSSCENDAESNNNRIGE 171
               L++ +    +ENQ      Q N+A   +L   L+Q+  +     +D ++    + E
Sbjct: 164 LNWVLQERVKNLYVENQIWRDLAQTNEATANNLRSNLEQVLAQ----VDDLDAFRRPLVE 223

Query: 172 --DDA-IDCGNKRIKKKTMI----CRICNSRISCMLFLPCRHLCSCKSCEID--LDSCPV 231
             DDA   CG+      T +    C+ C    + +L LPCRHLC C  C     L +CPV
Sbjct: 224 EADDAESSCGSCDGGDVTAVVNGGCKRCGELTASVLVLPCRHLCLCTVCGSSALLRTCPV 283

[Close]

BLAST of Sed0025354 vs. ExPASy Swiss-Prot
Match: Q8W5R5 (Kinesin-like protein KIN-7D, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=KIN7D PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.7e-04
Identity = 17/38 (44.74%), Postives = 23/38 (60.53%), Query Frame = 0


Query: 188  ICRICNSRISCMLFLPCRHLCSCKSCEIDLDSCPVCNT 226
            IC++C    +  + LPCRH C CKSC +    CP+C T
Sbjct: 1007 ICKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRT 1044

[Close]

BLAST of Sed0025354 vs. ExPASy TrEMBL
Match: A0A6J1CX68 (probable BOI-related E3 ubiquitin-protein ligase 2 OS=Momordica charantia OX=3673 GN=LOC111015404 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.4e-72
Identity = 168/242 (69.42%), Postives = 181/242 (74.79%), Query Frame = 0


Query: 1   MAIQLQWQRRNFGLPCNSAAEFHH-----LHSDDHRLQPVDGMSTQSVQPQNNNASSMAE 60
           MAIQLQ QRRNFGLP +S A+ H      L S +H L              ++ AS MAE
Sbjct: 1   MAIQLQLQRRNFGLPFDSPAQLHQFRPNILQSGEHNL--------LCRSDHSHAASLMAE 60

Query: 61  MSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLLRQIEARTRVLFQQKDEEIAVAKRRRID 120
           M TD +DRF+RLQSERFR LLQ +RNQQ GVLL QIE RTRVLFQQKDEEIA A  RRI+
Sbjct: 61  MPTDHMDRFIRLQSERFRLLLQQKRNQQIGVLLNQIETRTRVLFQQKDEEIARANNRRIE 120

Query: 121 LEQLLTRFQMENQERMRSVQENQAKVASLSHALDQIRDRRSSCEN-DAESNNNRIGEDDA 180
           LEQ LTR QMENQER R+VQENQA VASLSHAL+QIR+R SS  N DAESNNN  GEDDA
Sbjct: 121 LEQFLTRLQMENQERQRAVQENQAVVASLSHALEQIRERISSGANDDAESNNNVGGEDDA 180

Query: 181 IDCGNKRIKKKTMICRICNSRISCMLFLPCRHLCSCKSCEIDLDSCPVCNTTKKASIEAV 237
           ID G KR     MICRICNSRISC+LFLPCRHLCSCK CE  LD CPVCN TKKASIEAV
Sbjct: 181 IDRGKKR-----MICRICNSRISCVLFLPCRHLCSCKPCESGLDFCPVCNATKKASIEAV 229

[Close]

BLAST of Sed0025354 vs. ExPASy TrEMBL
Match: A0A0A0LMD7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G270790 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.3e-67
Identity = 162/269 (60.22%), Postives = 181/269 (67.29%), Query Frame = 0


Query: 1   MAIQLQWQRRNFGLPCNSAAE------------FHHL--------------HSDDHRLQP 60
           MAIQLQ  RRNFGL    +++             HHL              ++DDH L  
Sbjct: 1   MAIQLQLHRRNFGLDSTPSSDHQFHQLFHLLNHHHHLLLQPPDHAAQSGTNNNDDHLLLL 60

Query: 61  VDGMSTQSVQPQNNNASSMAEMSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLLRQIEAR 120
               S        +  S ++EM  D IDRF+RLQSERFR LLQ + NQQ GVLL QIE R
Sbjct: 61  QQYYSLTQSDFHQSLTSFLSEMPADHIDRFIRLQSERFRLLLQQKINQQIGVLLNQIETR 120

Query: 121 TRVLFQQKDEEIAVAKRRRIDLEQLLTRFQMENQERMRSVQENQAKVASLSHALDQIRDR 180
           TRVLFQQKDEEIA A  RR+ LEQLLTR QMENQER +SVQENQA VASLS AL+QIR++
Sbjct: 121 TRVLFQQKDEEIACANMRRMHLEQLLTRLQMENQERKKSVQENQAMVASLSRALNQIREK 180

Query: 181 RSSCENDAESNNN------RIGEDDAIDCG-NKRIKKKTMICRICNSRISCMLFLPCRHL 237
            S C NDAESNNN      R GEDDAID G  K+ KKK MIC+ICNSR+SC+L LPCRHL
Sbjct: 181 VSLCANDAESNNNNNSNNYRNGEDDAIDYGKKKKKKKKMMICKICNSRVSCVLLLPCRHL 240

[Close]

BLAST of Sed0025354 vs. ExPASy TrEMBL
Match: A0A1S3C6S8 (probable BOI-related E3 ubiquitin-protein ligase 3 OS=Cucumis melo OX=3656 GN=LOC103497335 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 6.7e-67
Identity = 163/273 (59.71%), Postives = 185/273 (67.77%), Query Frame = 0


Query: 1   MAIQLQWQRRNFGLPCNSAA---------EFHHL-HSDDHR---LQPVDGMSTQSVQPQN 60
           MAIQLQ   R+FG+   +A          +FH L H  +H    LQP +      +   N
Sbjct: 1   MAIQLQLHSRDFGIHSTTAPPPPSSSSDHQFHQLCHLLNHHHLLLQPREDHHAAQISGNN 60

Query: 61  NN-------------------ASSMAEMSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLL 120
           N+                   +S ++EM +D IDRF+RLQSERFR LLQ + NQQ GVLL
Sbjct: 61  NDHLLLLQQYCLTQSDLHQSLSSFVSEMPSDHIDRFIRLQSERFRLLLQQKINQQIGVLL 120

Query: 121 RQIEARTRVLFQQKDEEIAVAKRRRIDLEQLLTRFQMENQERMRSVQENQAKVASLSHAL 180
            QIE RTRVLFQQKDEEIA A  RRI LEQLLTR QMENQER +SVQENQA VASLS AL
Sbjct: 121 NQIETRTRVLFQQKDEEIACANMRRIHLEQLLTRLQMENQERKKSVQENQAMVASLSRAL 180

Query: 181 DQIRDRRSSCENDAESNNN----RIGEDDAIDCG-NKRIKKKTMICRICNSRISCMLFLP 237
           +QIR++ S C NDAESNNN    R GEDDAID G  K+ KKK MIC+ICNSR+SC+L LP
Sbjct: 181 NQIREKVSLCANDAESNNNNNNYRNGEDDAIDYGKTKKKKKKMMICKICNSRVSCVLLLP 240

[Close]

BLAST of Sed0025354 vs. ExPASy TrEMBL
Match: A0A6J1FVE9 (probable BOI-related E3 ubiquitin-protein ligase 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448450 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.3e-65
Identity = 154/244 (63.11%), Postives = 181/244 (74.18%), Query Frame = 0


Query: 1   MAIQLQWQRRNFGLPCNSAAEFHHLHSDDHRLQPVDGMSTQSVQPQNNNASS------MA 60
           MAIQLQ Q+RNFG P +SAAEFH        LQ  +G S+  +  +  + S       +A
Sbjct: 1   MAIQLQLQQRNFGRPLDSAAEFH------RHLQLGNGQSSLLLSQECWSKSDSRIDNFVA 60

Query: 61  EMSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLLRQIEARTRVLFQQKDEEIAVAKRRRI 120
           EMS DQIDRF+RL+SERFR LLQ++ NQQ  VLL QIE RTRVLFQQKDEEIA    R I
Sbjct: 61  EMSVDQIDRFIRLESERFRLLLQHKINQQIRVLLNQIENRTRVLFQQKDEEIASTNMRTI 120

Query: 121 DLEQLLTRFQMENQERMRSVQENQAKVASLSHALDQIRDRRSSCENDAESNNN--RIGED 180
            LEQLL + +MENQ+R R+V+ENQA VASLSHALD++R++  +  NDAES+NN  RIGED
Sbjct: 121 QLEQLLKKLEMENQKRKRAVEENQAMVASLSHALDEMREKLLASANDAESSNNNVRIGED 180

Query: 181 DAIDCG-NKRIKKKTMICRICNSRISCMLFLPCRHLCSCKSCEIDLDSCPVCNTTKKASI 236
           DA D G NK+ KK  MIC+ICNSRISC+L LPCRHLCSCKSC   L+ CPVCN TKKASI
Sbjct: 181 DASDFGNNKKRKKMRMICQICNSRISCVLLLPCRHLCSCKSCASALEFCPVCNATKKASI 238

[Close]

BLAST of Sed0025354 vs. ExPASy TrEMBL
Match: A0A6J1JD39 (probable BOI-related E3 ubiquitin-protein ligase 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483947 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.5e-63
Identity = 151/244 (61.89%), Postives = 178/244 (72.95%), Query Frame = 0


Query: 1   MAIQLQWQRRNFGLPCNSAAEFHHLHSDDHRLQPVDGMSTQSVQPQNNNASS------MA 60
           MAIQLQ Q+RNFG P +SAAEFH        LQ  +G S+  +  +  + S       + 
Sbjct: 1   MAIQLQLQQRNFGRPLDSAAEFH------RHLQLGNGQSSLLLSQECWSKSDSRIDNFVP 60

Query: 61  EMSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLLRQIEARTRVLFQQKDEEIAVAKRRRI 120
           EMS DQIDRF+RL+SERFR LLQ++ NQQ  VLL QIE RTRVLFQQKDEEIA    R I
Sbjct: 61  EMSVDQIDRFIRLESERFRLLLQHKINQQIRVLLNQIENRTRVLFQQKDEEIASTNMRTI 120

Query: 121 DLEQLLTRFQMENQERMRSVQENQAKVASLSHALDQIRDRRSSCENDAESNNN--RIGED 180
            LEQLL + +MENQ R R+V+ENQA VASLS ALD++R++  +  NDAES+NN  RIGED
Sbjct: 121 QLEQLLKKLEMENQMRKRAVEENQAMVASLSQALDEMREKLLASANDAESSNNNVRIGED 180

Query: 181 DAIDCGNKRIKKKTM-ICRICNSRISCMLFLPCRHLCSCKSCEIDLDSCPVCNTTKKASI 236
           DA D GN + +KK M IC+ICNSRISC+L LPCRHLCSCKSC   L+ CPVCN TKKASI
Sbjct: 181 DASDFGNNKKRKKMMLICQICNSRISCVLLLPCRHLCSCKSCASALEFCPVCNATKKASI 238

[Close]

BLAST of Sed0025354 vs. TAIR 10
Match: AT4G35070.1 (SBP (S-ribonuclease binding protein) family protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-31
Identity = 80/225 (35.56%), Postives = 131/225 (58.22%), Query Frame = 0


Query: 17  NSAAEFHHLHSDDHRLQPVDGMSTQSVQPQNNNASSMAEMSTDQIDRFLRLQSERFRFLL 76
           N  A FHH H              Q   P  +  ++  E    +ID+F+++Q+ER R++L
Sbjct: 53  NQHALFHHQHHQ------------QQQSPSQSFLAAQMEKQKQEIDQFIKIQNERLRYVL 112

Query: 77  QYRRNQQFGVLLRQIEARTRVLFQQKDEEIAVAKRRRIDLEQLLTRFQMENQERMRSVQE 136
           Q +R ++  ++LR++E++  +L  QK+EE++ A  + ++LE LL + +MENQ   R  +E
Sbjct: 113 QEQRKREMEMILRKMESKALLLMSQKEEEMSKALNKNMELEDLLRKMEMENQTWQRMARE 172

Query: 137 NQAKVASLSHALDQIRDRRSSC----ENDAESNNNRI-GEDDAIDCGNKRIKKKTMICRI 196
           N+A V +L+  L+Q+R+R ++C    E + E   +   GE D      K++K  +  C  
Sbjct: 173 NEAIVQTLNTTLEQVRERAATCYDAGEAEVEDEGSFCGGEGDGNSLPAKKMKMSSCCCNC 232

Query: 197 CNSRISCMLFLPCRHLCSCKSCEIDLDSCPVCNTTKKASIEAVIF 237
            ++ ++ +LFLPCRHLC C  CE  L  CP+CNT KK+ IEA+IF
Sbjct: 233 GSNGVTRVLFLPCRHLCCCMDCEEGLLLCPICNTPKKSRIEALIF 265

[Close]

BLAST of Sed0025354 vs. TAIR 10
Match: AT4G35070.2 (SBP (S-ribonuclease binding protein) family protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-30
Identity = 74/201 (36.82%), Postives = 125/201 (62.19%), Query Frame = 0


Query: 41  QSVQPQNNNASSMAEMSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLLRQIEARTRVLFQ 100
           Q   P  +  ++  E    +ID+F+++Q+ER R++LQ +R ++  ++LR++E++  +L  
Sbjct: 10  QQQSPSQSFLAAQMEKQKQEIDQFIKIQNERLRYVLQEQRKREMEMILRKMESKALLLMS 69

Query: 101 QKDEEIAVAKRRRIDLEQLLTRFQMENQERMRSVQENQAKVASLSHALDQIRDRRSSC-- 160
           QK+EE++ A  + ++LE LL + +MENQ   R  +EN+A V +L+  L+Q+R+R ++C  
Sbjct: 70  QKEEEMSKALNKNMELEDLLRKMEMENQTWQRMARENEAIVQTLNTTLEQVRERAATCYD 129

Query: 161 --ENDAESNNNRI-GEDDAIDCGNKRIKKKTMICRICNSRISCMLFLPCRHLCSCKSCEI 220
             E + E   +   GE D      K++K  +  C   ++ ++ +LFLPCRHLC C  CE 
Sbjct: 130 AGEAEVEDEGSFCGGEGDGNSLPAKKMKMSSCCCNCGSNGVTRVLFLPCRHLCCCMDCEE 189

Query: 221 DLDSCPVCNTTKKASIEAVIF 237
            L  CP+CNT KK+ IEA+IF
Sbjct: 190 GLLLCPICNTPKKSRIEALIF 210

[Close]

BLAST of Sed0025354 vs. TAIR 10
Match: AT1G45976.1 (S-ribonuclease binding protein 1 )

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-16
Identity = 69/216 (31.94%), Postives = 108/216 (50.00%), Query Frame = 0


Query: 25  LHSDDHRLQPVDGMSTQSVQPQNNNASSMAEMSTDQIDRFLRLQSERFR--FLLQYRRNQ 84
           L  D+ R+   DG +  S+    ++     +     IDRFL++Q ++ R   L + +R Q
Sbjct: 116 LSLDNARVASSDGSALLSL--VGDDIDRELQRQDADIDRFLKIQGDQLRHAILDKIKRGQ 175

Query: 85  QFGVLLRQIEARTRVLFQQKDEEIAVAKRRRIDLEQLLTRFQMENQERMRSVQENQAKVA 144
           Q  V L  +E +     ++KDEE+    R+  +LE  + +  ME +   +  + N+  +A
Sbjct: 176 QKTVSL--MEEKVVQKLREKDEELERINRKNKELEVRMEQLTMEAEAWQQRAKYNENMIA 235

Query: 145 SLSHALDQIRDR-RSSCENDAESNNNRIGEDDAIDCGNKRIK-----KKTMICRICNSRI 204
           +L++ LD+ + R R S E   +S       DD   C N R       K  M+CR C  R 
Sbjct: 236 ALNYNLDRAQGRPRDSIEGCGDSE-----VDDTASCFNGRDNSNNNTKTMMMCRFCGVRE 295

Query: 205 SCMLFLPCRHLCSCKSCEIDLDSCPVCNTTKKASIE 233
            CML LPC H+C CK CE  L SCP+C ++K   +E
Sbjct: 296 MCMLLLPCNHMCLCKECERKLSSCPLCQSSKFLGME 322

[Close]

BLAST of Sed0025354 vs. TAIR 10
Match: AT5G47050.1 (SBP (S-ribonuclease binding protein) family protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-12
Identity = 56/196 (28.57%), Postives = 94/196 (47.96%), Query Frame = 0


Query: 45  PQNNNASSMAEMSTDQIDRFLRLQSERFRFLLQYRRNQQFGVLLRQIEARTRVLFQQKDE 104
           P   + +   +  TD+++RFL++Q E+ + +L     + +  LLR  E   R   ++K+ 
Sbjct: 101 PITGDVAGEIKSQTDELNRFLQIQGEQLKRMLAENSERNYRELLRTTEESVRRRLREKEA 160

Query: 105 EIAVAKRRRIDLEQLLTRFQMENQERMRSVQENQAKVASLSHALDQ--IRDRRSSCENDA 164
           EI  A RR ++LE   T+ + E +         +A+  SL   L Q  +           
Sbjct: 161 EIEKATRRHVELEARATQIETEARAWQMRAAAREAEATSLQAQLHQAVVVAHGGGVITTV 220

Query: 165 ESNNNRI-GEDDAIDCGN-----KRIKKKTMICRICNSRISCMLFLPCRHLCSCKSCEID 224
           E  +  + G D+A D  +      R++     CRIC  R + +L LPCRHL  C  C+  
Sbjct: 221 EPQSGSVDGVDEAEDAESAYVDPDRVEMIGPGCRICRRRSATVLALPCRHLVMCTECDGS 280

Query: 225 LDSCPVCNTTKKASIE 233
           +  CP+C +TK +S+E
Sbjct: 281 VRICPLCLSTKNSSVE 296

[Close]

BLAST of Sed0025354 vs. TAIR 10
Match: AT1G79110.2 (zinc ion binding )

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-12
Identity = 69/248 (27.82%), Postives = 111/248 (44.76%), Query Frame = 0


Query: 17  NSAAEFHHLHSDDHRLQPVDGMSTQ-------SVQPQNNNASSMAEMSTDQIDRFLRLQS 76
           +S + +HHL   + R       +T        S   Q+ + SS       +IDRF+ L  
Sbjct: 105 SSRSNYHHLLLQNPRSSSCVNAATTTTTTTLFSFLGQDIDISSHMNQQQHEIDRFVSLHM 164

Query: 77  ERFRFLLQYRRNQQFGVLLRQIEARTRVLFQQKDEEIAVAKRRRIDLEQLLTRFQMENQE 136
           ER ++ ++ +R +Q   ++  IE       + K+EE     +    LE+ +    +ENQ 
Sbjct: 165 ERVKYEIEEKRKRQARTIMEAIEQGLVKRLRVKEEERERIGKVNHALEERVKSLSIENQI 224

Query: 137 RMRSVQENQAKV----ASLSHALDQIRD--------RRSSCENDAES------------- 196
                Q N+A       +L H L Q++D        +  + E+DAES             
Sbjct: 225 WRDLAQTNEATANHLRTNLEHVLAQVKDVSRGAGLEKNMNEEDDAESCCGSSCGGGGEET 284

Query: 197 NNNRIG-EDDAIDCGNKRIKKKTMICRICNSRISCMLFLPCRHLCSCKSCEIDLDSCPVC 232
              R+G E +A D   K  +++  +CR C    SC+L LPCRHLC C  C   + +CP+C
Sbjct: 285 VRRRVGLEREAQD---KAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCGSSVHTCPIC 344

The following BLAST results are available for this feature:

BLAST of Sed0025354 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902052.1	3.4e-73	70.37	probable BOI-related E3 ubiquitin-protein ligase 3 [Benincasa hispida]	[more]
XP_022146109.1	2.9e-72	69.42	probable BOI-related E3 ubiquitin-protein ligase 2 [Momordica charantia]	[more]
XP_004147074.1	2.8e-67	60.22	probable BOI-related E3 ubiquitin-protein ligase 3 isoform X1 [Cucumis sativus] ...	[more]
XP_008457700.1	1.4e-66	59.71	PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Cucumis melo]	[more]
XP_022943834.1	2.6e-65	63.11	probable BOI-related E3 ubiquitin-protein ligase 2 isoform X1 [Cucurbita moschat...	[more]

BLAST of Sed0025354 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IDI6	2.5e-10	27.89	Probable BOI-related E3 ubiquitin-protein ligase 2 OS=Arabidopsis thaliana OX=37...	[more]
Q9LDD1	6.7e-08	28.14	Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana OX=37...	[more]
O81851	2.0e-07	27.89	E3 ubiquitin-protein ligase BOI OS=Arabidopsis thaliana OX=3702 GN=BOI PE=1 SV=1	[more]
Q9FHE4	1.1e-05	28.57	BOI-related E3 ubiquitin-protein ligase 1 OS=Arabidopsis thaliana OX=3702 GN=BRG...	[more]
Q8W5R5	2.7e-04	44.74	Kinesin-like protein KIN-7D, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=KI...	[more]

BLAST of Sed0025354 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CX68	1.4e-72	69.42	probable BOI-related E3 ubiquitin-protein ligase 2 OS=Momordica charantia OX=367...	[more]
A0A0A0LMD7	1.3e-67	60.22	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G270790 P...	[more]
A0A1S3C6S8	6.7e-67	59.71	probable BOI-related E3 ubiquitin-protein ligase 3 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1FVE9	1.3e-65	63.11	probable BOI-related E3 ubiquitin-protein ligase 2 isoform X1 OS=Cucurbita mosch...	[more]
A0A6J1JD39	1.5e-63	61.89	probable BOI-related E3 ubiquitin-protein ligase 2 isoform X1 OS=Cucurbita maxim...	[more]

BLAST of Sed0025354 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35070.1	1.5e-31	35.56	SBP (S-ribonuclease binding protein) family protein	[more]
AT4G35070.2	1.7e-30	36.82	SBP (S-ribonuclease binding protein) family protein	[more]
AT1G45976.1	1.8e-16	31.94	S-ribonuclease binding protein 1	[more]
AT5G47050.1	1.2e-12	28.57	SBP (S-ribonuclease binding protein) family protein	[more]
AT1G79110.2	1.6e-12	27.82	zinc ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 188..226 e-value: 8.1E-9 score: 35.2
None	No IPR available	PANTHER	PTHR42647:SF6	BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED	coord: 33..235
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 160..234 e-value: 2.2E-9 score: 38.6
IPR017066	E3 ubiquitin-protein ligase BOI-like	PANTHER	PTHR42647	SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN	coord: 33..235
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 189..224 score: 9.789479

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025354.1	Sed0025354.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity