Sed0025308 (gene) Chayote v1

Overview
NameSed0025308
Typegene
OrganismSechium edule (Chayote v1)
DescriptionWound-responsive family protein
LocationLG04: 43483934 .. 43484573 (+)
RNA-Seq ExpressionSed0025308
SyntenySed0025308
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAAAAAACATCTATATAAGCATATGAAACACTCACATCTTTACCTCAATTTCGTCACAGAATTAAAAACGCTTAGACAAAACAAGCAAGAAAAAATGTGTGCCGGAAAGAGCTGGACGGCGGCGGCGGCGGCGAGTATTGGGGCGGTGGAGGCGTTGAAAGATCAAGGCCACTTGTGCCGGTGGAACTCGGCTGTGAGGGCTCTGTCTCAGCCTAATAAGCTTTCTTCTTCGACTTCGGCCGCGGCGGCGGTTAGGGATTCGGGTGAAGTTAAAAGGGAAGATCAAAGTAAAACCAAGCAGTCTGAGGAATCTCTTAGAACTGTTATGTACTTGAGTTGTTGGGGTCCTTATTGATTTTTTGTTTTTTTTAGAAAAAATCTTAAGTGGGGAGGAACTCATGAACGTAGCTTCATGTGTGTACCATTTTTGTAGATGTTTGTTTAATTTCATCATGTGTGAAATCGAATAATAATGACTAGAATTAATGCATAATTCAATTTGGATTAGGGTTTGCTTCAAGGAGAAATTGTTTTTTTTTTACTCTATAAAATATGGTAGGCTAAATTAACATTTTAAACTTTGTTAGGGTCCTTTTTGAAAATATAAATAAAGCTTAGCAAACGATATCTTACTCATC

mRNA sequence

ACAAAAAAACATCTATATAAGCATATGAAACACTCACATCTTTACCTCAATTTCGTCACAGAATTAAAAACGCTTAGACAAAACAAGCAAGAAAAAATGTGTGCCGGAAAGAGCTGGACGGCGGCGGCGGCGGCGAGTATTGGGGCGGTGGAGGCGTTGAAAGATCAAGGCCACTTGTGCCGGTGGAACTCGGCTGTGAGGGCTCTGTCTCAGCCTAATAAGCTTTCTTCTTCGACTTCGGCCGCGGCGGCGGTTAGGGATTCGGGTGAAGTTAAAAGGGAAGATCAAAGTAAAACCAAGCAGTCTGAGGAATCTCTTAGAACTGTTATGTACTTGAGTTGTTGGGGTCCTTATTGATTTTTTGTTTTTTTTAGAAAAAATCTTAAGTGGGGAGGAACTCATGAACGTAGCTTCATGTGTGTACCATTTTTGTAGATGTTTGTTTAATTTCATCATGTGTGAAATCGAATAATAATGACTAGAATTAATGCATAATTCAATTTGGATTAGGGTTTGCTTCAAGGAGAAATTGTTTTTTTTTTACTCTATAAAATATGGTAGGCTAAATTAACATTTTAAACTTTGTTAGGGTCCTTTTTGAAAATATAAATAAAGCTTAGCAAACGATATCTTACTCATC

Coding sequence (CDS)

ATGAAACACTCACATCTTTACCTCAATTTCGTCACAGAATTAAAAACGCTTAGACAAAACAAGCAAGAAAAAATGTGTGCCGGAAAGAGCTGGACGGCGGCGGCGGCGGCGAGTATTGGGGCGGTGGAGGCGTTGAAAGATCAAGGCCACTTGTGCCGGTGGAACTCGGCTGTGAGGGCTCTGTCTCAGCCTAATAAGCTTTCTTCTTCGACTTCGGCCGCGGCGGCGGTTAGGGATTCGGGTGAAGTTAAAAGGGAAGATCAAAGTAAAACCAAGCAGTCTGAGGAATCTCTTAGAACTGTTATGTACTTGAGTTGTTGGGGTCCTTATTGA

Protein sequence

MKHSHLYLNFVTELKTLRQNKQEKMCAGKSWTAAAAASIGAVEALKDQGHLCRWNSAVRALSQPNKLSSSTSAAAAVRDSGEVKREDQSKTKQSEESLRTVMYLSCWGPY
Homology
BLAST of Sed0025308 vs. NCBI nr
Match: KAG6589196.1 (hypothetical protein SDJN03_17761, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.5 bits (319), Expect = 7.2e-26
Identity = 68/88 (77.27%), Postives = 73/88 (82.95%), Query Frame = 0

Query: 25  MCAGKSWTAAAAASIGAVEALKDQGHLCRWNSAVRALSQPNKL--SSSTSAAAAVRDSGE 84
           MC+GK WT AAAASIGAVEALKDQGHLCRWNSAVRALSQPNKL      S+++AVRD  E
Sbjct: 1   MCSGKYWTTAAAASIGAVEALKDQGHLCRWNSAVRALSQPNKLPPPPPLSSSSAVRDCRE 60

Query: 85  VKREDQSKTKQSEESLRTVMYLSCWGPY 111
              ED SK KQSEES+RTVMYLSCWGPY
Sbjct: 61  ---EDHSKPKQSEESIRTVMYLSCWGPY 85

BLAST of Sed0025308 vs. NCBI nr
Match: KAG7022896.1 (hypothetical protein SDJN02_16632, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-24
Identity = 69/102 (67.65%), Postives = 77/102 (75.49%), Query Frame = 0

Query: 11  VTELKTLRQNKQEKMCAGKSWTAAAAASIGAVEALKDQGHLCRWNSAVRALSQPNKLSS- 70
           V++ K  +  +  +   GK WT AAAASIGAVEALKDQGHLCRWNSAVRALSQPNKL   
Sbjct: 149 VSDQKWKQSEESLRTVIGKYWTTAAAASIGAVEALKDQGHLCRWNSAVRALSQPNKLPPP 208

Query: 71  -STSAAAAVRDSGEVKREDQSKTKQSEESLRTVMYLSCWGPY 111
             +S++ AVRD  E   ED SK KQSEESLRTVMYLSCWGPY
Sbjct: 209 LPSSSSPAVRDCRE---EDHSKPKQSEESLRTVMYLSCWGPY 247

BLAST of Sed0025308 vs. NCBI nr
Match: KAE8645761.1 (hypothetical protein Csa_020242 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 7.4e-23
Identity = 72/105 (68.57%), Postives = 80/105 (76.19%), Query Frame = 0

Query: 15  KTLRQNKQEKMCAGKSWTAAAAASIGAVEALKDQGHLCRWNS--AVRAL-SQPNKLSSST 74
           ++LR     KMCAGKSWT AAAASIGAVEALKDQGHL R N+   VRA+ S  NKLSSS+
Sbjct: 137 ESLRTVITRKMCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISSHHNKLSSSS 196

Query: 75  -----SAAAAVRDSGEVKRE-DQSKTKQSEESLRTVMYLSCWGPY 111
                S+A+ + DS EVKRE D SK KQSEESLRTVMYLSCWGPY
Sbjct: 197 SSSSKSSASVIADSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY 241

BLAST of Sed0025308 vs. NCBI nr
Match: KAA0031601.1 (hypothetical protein E6C27_scaffold139G003690 [Cucumis melo var. makuwa] >TYK07053.1 hypothetical protein E5676_scaffold13G003710 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 6.3e-22
Identity = 69/94 (73.40%), Postives = 75/94 (79.79%), Query Frame = 0

Query: 25  MCAGKSWTAAAAASIGAVEALKDQGHLCRWNS--AVRAL-SQPNKLSSST----SAAAAV 84
           MCAGKSWT AAAASIGAVEALKDQGHL R N+   VRA+ S  NKLSSS+    S+A+ +
Sbjct: 1   MCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISSHHNKLSSSSSSSNSSASVM 60

Query: 85  RDSGEVKRE-DQSKTKQSEESLRTVMYLSCWGPY 111
            DS EVKRE D SK KQSEESLRTVMYLSCWGPY
Sbjct: 61  ADSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY 94

BLAST of Sed0025308 vs. NCBI nr
Match: RWW15807.1 (hypothetical protein GW17_00020342 [Ensete ventricosum] >RZR91864.1 hypothetical protein BHM03_00020058 [Ensete ventricosum])

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-14
Identity = 54/91 (59.34%), Postives = 65/91 (71.43%), Query Frame = 0

Query: 26  CAGKSWTAAAAASIGAVEALKDQGHLCRWNSAVRALSQPNK-----LSSSTSAA--AAVR 85
           CAG++  AAAAASIGAVEALKDQ  LCRWN A+R+L Q  K     L+ S  AA  +++ 
Sbjct: 3   CAGRASLAAAAASIGAVEALKDQAGLCRWNYALRSLQQRAKSGMGSLAQSRRAASSSSID 62

Query: 86  DSGEVKREDQSKTKQSEESLRTVMYLSCWGP 110
             GE +  D+ K KQSEE+LRTVMYLSCWGP
Sbjct: 63  GKGEWQGGDE-KAKQSEEALRTVMYLSCWGP 92

BLAST of Sed0025308 vs. ExPASy TrEMBL
Match: A0A0A0K1Q6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046680 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.3e-22
Identity = 69/95 (72.63%), Postives = 75/95 (78.95%), Query Frame = 0

Query: 25  MCAGKSWTAAAAASIGAVEALKDQGHLCRWNS--AVRAL-SQPNKLSSST-----SAAAA 84
           MCAGKSWT AAAASIGAVEALKDQGHL R N+   VRA+ S  NKLSSS+     S+A+ 
Sbjct: 1   MCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISSHHNKLSSSSSSSSKSSASV 60

Query: 85  VRDSGEVKRE-DQSKTKQSEESLRTVMYLSCWGPY 111
           + DS EVKRE D SK KQSEESLRTVMYLSCWGPY
Sbjct: 61  IADSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY 95

BLAST of Sed0025308 vs. ExPASy TrEMBL
Match: A0A5D3C541 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003710 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.0e-22
Identity = 69/94 (73.40%), Postives = 75/94 (79.79%), Query Frame = 0

Query: 25  MCAGKSWTAAAAASIGAVEALKDQGHLCRWNS--AVRAL-SQPNKLSSST----SAAAAV 84
           MCAGKSWT AAAASIGAVEALKDQGHL R N+   VRA+ S  NKLSSS+    S+A+ +
Sbjct: 1   MCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISSHHNKLSSSSSSSNSSASVM 60

Query: 85  RDSGEVKRE-DQSKTKQSEESLRTVMYLSCWGPY 111
            DS EVKRE D SK KQSEESLRTVMYLSCWGPY
Sbjct: 61  ADSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY 94

BLAST of Sed0025308 vs. ExPASy TrEMBL
Match: A0A444EZN7 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00020342 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 54/91 (59.34%), Postives = 65/91 (71.43%), Query Frame = 0

Query: 26  CAGKSWTAAAAASIGAVEALKDQGHLCRWNSAVRALSQPNK-----LSSSTSAA--AAVR 85
           CAG++  AAAAASIGAVEALKDQ  LCRWN A+R+L Q  K     L+ S  AA  +++ 
Sbjct: 3   CAGRASLAAAAASIGAVEALKDQAGLCRWNYALRSLQQRAKSGMGSLAQSRRAASSSSID 62

Query: 86  DSGEVKREDQSKTKQSEESLRTVMYLSCWGP 110
             GE +  D+ K KQSEE+LRTVMYLSCWGP
Sbjct: 63  GKGEWQGGDE-KAKQSEEALRTVMYLSCWGP 92

BLAST of Sed0025308 vs. ExPASy TrEMBL
Match: A0A4S8J4J3 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb11t16490 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.3e-14
Identity = 53/90 (58.89%), Postives = 62/90 (68.89%), Query Frame = 0

Query: 26  CAGKSWTAAAAASIGAVEALKDQGHLCRWNSAVRALSQPNK-----LSSSTSAAAAVRDS 85
           CAG++  AAAAASIGAVEALKDQ  LCRWN A+R+L Q  K     LS S  AA++    
Sbjct: 3   CAGRASLAAAAASIGAVEALKDQAGLCRWNYALRSLQQRAKSGMGSLSQSRRAASSSSID 62

Query: 86  GEVK-REDQSKTKQSEESLRTVMYLSCWGP 110
           G  + +    K KQSEE+LRTVMYLSCWGP
Sbjct: 63  GRGRWQGGDEKAKQSEEALRTVMYLSCWGP 92

BLAST of Sed0025308 vs. ExPASy TrEMBL
Match: I3SXZ3 (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.0e-14
Identity = 50/92 (54.35%), Postives = 61/92 (66.30%), Query Frame = 0

Query: 29  KSWTAAAAASIGAVEALKDQGHLCRWNSA-----------VRALSQPNKLSSSTSAAAAV 88
           ++WT   AAS+G VEALKDQG +CRWNS            VR LSQ NKLSS + ++AAV
Sbjct: 6   RAWTWTVAASVGVVEALKDQG-ICRWNSVIRSAHQHAKHHVRTLSQANKLSSQSQSSAAV 65

Query: 89  RDSGEVKREDQSKTKQSEESLRTVMYLSCWGP 110
             S +++     K KQ+EE LRTVMYLSCWGP
Sbjct: 66  ASSAKLR---DQKAKQAEEDLRTVMYLSCWGP 93

BLAST of Sed0025308 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-15
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = 0

Query: 29  KSWTAAAAASIGAVEALKDQGHLCRWNSAVRALSQ----------PNKLSSSTSAAAAVR 88
           K+WT   A SIGAVEALKDQ  LCRWN  +R+++Q            K  SS+S +AAV 
Sbjct: 6   KAWT--VAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVT 65

Query: 89  DSGEVKREDQSKTKQSEESLRTVMYLSCWGP 110
            SGE       K K++EESLRTVMYLSCWGP
Sbjct: 66  SSGE-----SEKAKKAEESLRTVMYLSCWGP 89

BLAST of Sed0025308 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-13
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 0

Query: 27  AGKSWTAAAAASIGAVEALKDQGHLCRWNSAVRALSQPNKLSSSTSAAAAVRDSGEVKRE 86
           A K+W    AASIGAVEALKDQ  +CRWN  +R+ +Q   L ++  + +  +       +
Sbjct: 4   ASKTW--MVAASIGAVEALKDQLGVCRWNYVIRSANQ--YLRNNLRSVSQAKKLSSSSID 63

Query: 87  DQSKTKQSEESLRTVMYLSCWGP 110
             +KTKQ+EESLRTVMYLSCWGP
Sbjct: 64  YTNKTKQAEESLRTVMYLSCWGP 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6589196.17.2e-2677.27hypothetical protein SDJN03_17761, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7022896.11.0e-2467.65hypothetical protein SDJN02_16632, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAE8645761.17.4e-2368.57hypothetical protein Csa_020242 [Cucumis sativus][more]
KAA0031601.16.3e-2273.40hypothetical protein E6C27_scaffold139G003690 [Cucumis melo var. makuwa] >TYK070... [more]
RWW15807.13.7e-1459.34hypothetical protein GW17_00020342 [Ensete ventricosum] >RZR91864.1 hypothetical... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K1Q62.3e-2272.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046680 PE=4 SV=1[more]
A0A5D3C5413.0e-2273.40Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A444EZN71.8e-1459.34Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00020342 PE=4 SV=1[more]
A0A4S8J4J32.3e-1458.89Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb11t16490 PE=4 SV=... [more]
I3SXZ33.0e-1454.35Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT4G10270.12.7e-1553.85Wound-responsive family protein [more]
AT4G10265.11.1e-1350.60Wound-responsive family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 36..109
e-value: 5.6E-26
score: 91.4
IPR022251Protein of unknown function wound-inducedPANTHERPTHR33090DUF3774 DOMAIN PROTEIN-RELATEDcoord: 25..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0025308.1Sed0025308.1mRNA