Sed0025305 (gene) Chayote v1

Overview


Name	Sed0025305
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ribosomal protein L31
Location	LG11: 1006043 .. 1008534 (+)
RNA-Seq Expression	Sed0025305
Synteny	Sed0025305

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCACTTTCATGAAGGACATCAGAGTAAATTTACAACCACCCTTCATCGTCTTCCTCACTCGCCTCCCGCCGTGAACAAAACAGAGCTTCTTCTTCAATCTCTGTATCAGAATACTAATCTCTCTCTATTTTCTTTTCATTTTTCCAATCTTATTTCTGTTTTTGCTCAATTGGGTACTAATTTCTTTGCTTGATTTGGCGAAATTGATAATTTCCTTTCCGTTTCTACTGATTTAACCTAAATCGCAAATAATAACTCCGTTGATATTTTCAGAAACGGACGCATTTCAACAATCAGAGCCTTGGGGGAAGATTTTGACATTGCTGTTCACCCAGTTCTTCAAAACTTTAGGGTTGTCATTATCTGTATGTTTGTTCTCCATTTTTTTTTTAAGTTATTATCTCTTCCAATTTTCAATTTTAGGGTTGTTAGTATTGGATCTTTGTGAATGATTTTCTCTGGGGTTACCGATTGTTTGGATTCTGGATCATTAGAATTGATCTGTGTTTGTAAATATCTGTACCTCATTACAAAGGTGTTTGATGTGAAATTGTAGAGTGATTATAAACGAGAGATTATTTTGAGTGATTAGAAATTTAAGTCTTAATAATAGAATAGCTGATTTGGGTGTGATTATTTTTAGGGGTTTCAGTTAATAGCTCGTTTAGGACGATAGTTTTGTAGAGAGGTAGGTTGCAAACAATAACTTATTTGGATGTGGTTAGAAATGAGTTATTATGAGAAGTTAGAAATGATTAGTTATAAATGAATGATTAGACATGAATGATTAAAAATGAGTGATTAGAAATGAACGATTATTTTGAGTGATTAGAAATGAATGATTATTTTAAGTGATTACTATAGCTCGTTTGGATGTGATTGTTTGAAGGGAAATTGTAAAAACTCATTTGTAATAGCTCGTTAATTGCGTCAAATAAACATCATTATGCGGTTAAGTTAGGGTTTAGGATGAAATGAAGAGAGAAGTGTTCTACAGCCGTATCGTGGTGGTTATTTTCAGATTTCATACTCTTTTGAGTTACGAATATTGAAAATTACGTAATGCCCACCCAGTGTTTGATGAAATTCTTCTATAAAATGGAATATTTTTACTTGTTCATCCTTGTTTATTTCCTCTTAATGTGGCTGTCACTTCCTAAGTTTCTGCTCTTTTTGTGTGACGATTGTTGAACGTTGCATAATGCCCACCAAATGTTTTGATGAAATTCTATCATAAAGCTGTATGATTGTTCATGTTCACCCTTCTTCATTCTCCCCTCAATGTGGCTGTCACTTCTGAATTTCTACTCCTTTGGGATGATGAATATTGAACATTTCATAGTGCGCACCAACTTTGACGAAGTTCTTATAAGTGGTATTCTTTTACATGTTCATCCATTTTTTATATTCATGACTGTTTGGGCCAACTTACGAGTACCTCAACTATTCTCAAAGTAACTAGTAGGAAATTAATTTTTAGGAAGGCGGTTATCATAGATTGAATCCTAAACGTTTCAGCACTTTATTATTTATTAGGCATTTATTTGACTACTAGATCAATTCATGATTGTTAATCATTTTCTTCGCTCCCCCATGTATAGAAAGAGAGGTATTGTCCATTGAGAATTGAAATATATGGTTTAAGAAATTAGAATCTAGTCCTCAAGGGGTGGCGCAGTGGTTGAAGACTTAGGTTTTGAAGGTATGCTTCTCTCAAGGTCCTGAGTTCGAGACTCACTTGTGATATTACTCCTTCGCTGTCTCCGGTGCCTTGCCTAGGGACGGGCGTTGCAAAAAAGGAAATTAGAATCTAAAGTAGCTTTGTTGTAATAGTTCTTTTTCTGTTTGATATATCAATTTTTCTCTAGCAGCATTGATTTGTAACTACTAGTTATGATTTCAGATTTGTAGAATGAAGAAAGGCATGCACCCTCAACAGCAGTGGATATCATATGTCACTCAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATACTGGTAAAGTCTATCACTTCAGAGCAAGGCGCCAATTGGCTGAAAGTATCGGGCAGATTGCCAAGTTCAAACGTCGTTACGAGAAGGGGAACGATGAGGACGCCGAAAAGGCTGAAAAGTGAGGTTCCTTGCAGCTCAAGAACCAGCTGTTTTCTTGGATCATTATGGACTCGGTTTCAAGGGCATGACCTTGTTAGTGTTAGACACTGATTTCTTTTCGTAGTATAGTATTTTGCAGTACACTAAGTTATTAATTATAATGTTTTTGATATGCTTTTACCATTAGAATATCTAATGTGCATTTCTAATTTCTGCTCAATAAATGTTGATCATTTTCCACCTTGTTTATCTAATTTTCTAGCCGAACTCACAGGGCTTGTTATGCTACTAAAAAACCTTAGAATAGTGGAGTTGTTGACTTAAGTATACTGAAGTAGTATGCCTCTCCCCTTTCAGGACTCGAAGTTGGATGTACAACTTCCCG

mRNA sequence

TTCCACTTTCATGAAGGACATCAGAGTAAATTTACAACCACCCTTCATCGTCTTCCTCACTCGCCTCCCGCCGTGAACAAAACAGAGCTTCTTCTTCAATCTCTGTATCAGAATACTAATCTCTCTCTATTTTCTTTTCATTTTTCCAATCTTATTTCTGTTTTTGCTCAATTGGAAACGGACGCATTTCAACAATCAGAGCCTTGGGGGAAGATTTTGACATTGCTGTTCACCCAGTTCTTCAAAACTTTAGGGTTGTCATTATCTATTTGTAGAATGAAGAAAGGCATGCACCCTCAACAGCAGTGGATATCATATGTCACTCAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATACTGGTAAAGTCTATCACTTCAGAGCAAGGCGCCAATTGGCTGAAAGTATCGGGCAGATTGCCAAGTTCAAACGTCGTTACGAGAAGGGGAACGATGAGGACGCCGAAAAGGCTGAAAAGTGAGGTTCCTTGCAGCTCAAGAACCAGCTGTTTTCTTGGATCATTATGGACTCGGTTTCAAGGGCATGACCTTGTTAGTGTTAGACACTGATTTCTTTTCGTAGTATAGTATTTTGCAGTACACTAAGTTATTAATTATAATGTTTTTGATATGCTTTTACCATTAGAATATCTAATGTGCATTTCTAATTTCTGCTCAATAAATGTTGATCATTTTCCACCTTGTTTATCTAATTTTCTAGCCGAACTCACAGGGCTTGTTATGCTACTAAAAAACCTTAGAATAGTGGAGTTGTTGACTTAAGTATACTGAAGTAGTATGCCTCTCCCCTTTCAGGACTCGAAGTTGGATGTACAACTTCCCG

Coding sequence (CDS)

ATGAAGAAAGGCATGCACCCTCAACAGCAGTGGATATCATATGTCACTCAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATACTGGTAAAGTCTATCACTTCAGAGCAAGGCGCCAATTGGCTGAAAGTATCGGGCAGATTGCCAAGTTCAAACGTCGTTACGAGAAGGGGAACGATGAGGACGCCGAAAAGGCTGAAAAGTGA

Protein sequence

MKKGMHPQQQWISYVTQSGRLMHVMMTKIHHTGKVYHFRARRQLAESIGQIAKFKRRYEKGNDEDAEKAEK

Homology

[Close]

BLAST of Sed0025305 vs. NCBI nr
Match: XP_022946219.1 (uncharacterized protein LOC111450371 [Cucurbita moschata])

HSP 1 Score: 126.7 bits (317), Expect = 7.9e-26
Identity = 65/74 (87.84%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1  MKKGMHPQQQWISYVTQSGRLMHVMMTKIHHTGKVYHFRARRQLAESIGQIAKFKRRYEK 60
          MKKG+HPQ QWISYVTQSGRLMHVMMTKIHH GKVYHFRARRQLAESIGQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAESIGQIAKFKRRYEK 60

Query: 61 G---NDEDAEKAEK 72
              NDE  EKAEK
Sbjct: 61 DIVENDESVEKAEK 74

[Close]

BLAST of Sed0025305 vs. NCBI nr
Match: XP_022143125.1 (uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncharacterized protein LOC111013069 [Momordica charantia])

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MKKGMHPQQQWISYVTQSGRLMHVMMTKIHHTGKVYHFRARRQLAESIGQIAKFKRRYEK 60
          MKKG+HPQ QWISYVTQSGRLMHVMMTKIHH GKVYHFRA+RQ+AES+GQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 61 GNDEDAEKAEK 72
          G  E+ E AEK
Sbjct: 61 GIAENVENAEK 71

[Close]

BLAST of Sed0025305 vs. NCBI nr
Match: KAG7030387.1 (hypothetical protein SDJN02_08734, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25
Identity = 64/74 (86.49%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   MKKGMHPQQQWISYVTQSGRLMHVMMTKIHHTGKVYHFRARRQLAESIGQIAKFKRRYEK 60
           MKKG+HPQ QWISYVTQSGRLMHVMMTKIHH GKVYH RARRQLAESIGQIAKFKRRYEK
Sbjct: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115

Query: 61  G---NDEDAEKAEK 72
               NDE  EKAEK
Sbjct: 116 DIVENDESVEKAEK 129

[Close]

BLAST of Sed0025305 vs. NCBI nr
Match: XP_023547264.1 (uncharacterized protein LOC111806134 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.0 bits (310), Expect = 5.1e-25
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MKKGMHPQQQWISYVTQSGRLMHVMMTKIHHTGKVYHFRARRQLAESIGQIAKFKRRYEK 60
          MKKG+HPQ QWISYVTQSGRLMHVMMTKIHH GKVYH RARRQLAES+GQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60

Query: 61 G---NDEDAEKAEK 72
              NDE  EKAEK
Sbjct: 61 DIVENDESVEKAEK 74

[Close]

BLAST of Sed0025305 vs. NCBI nr
Match: XP_022999184.1 (uncharacterized protein LOC111493644 [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 8.7e-25
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MKKGMHPQQQWISYVTQSGRLMHVMMTKIHHTGKVYHFRARRQLAESIGQIAKFKRRYEK 60
          MKKG+HPQ QWISYVTQSGRLMHVMMTKIHH GKVY FRARRQLAES+GQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYQFRARRQLAESVGQIAKFKRRYEK 60

Query: 61 G---NDEDAEKAEK 72
              NDE  EKAEK
Sbjct: 61 DIVENDESVEKAEK 74

[Close]

BLAST of Sed0025305 vs. ExPASy TrEMBL
Match: A0A6J1G367 (uncharacterized protein LOC111450371 OS=Cucurbita moschata OX=3662 GN=LOC111450371 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.8e-26
Identity = 65/74 (87.84%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1  MKKGMHPQQQWISYVTQSGRLMHVMMTKIHHTGKVYHFRARRQLAESIGQIAKFKRRYEK 60
          MKKG+HPQ QWISYVTQSGRLMHVMMTKIHH GKVYHFRARRQLAESIGQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAESIGQIAKFKRRYEK 60

Query: 61 G---NDEDAEKAEK 72
              NDE  EKAEK
Sbjct: 61 DIVENDESVEKAEK 74

[Close]

BLAST of Sed0025305 vs. ExPASy TrEMBL
Match: A0A6J1CPB3 (uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013069 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MKKGMHPQQQWISYVTQSGRLMHVMMTKIHHTGKVYHFRARRQLAESIGQIAKFKRRYEK 60
          MKKG+HPQ QWISYVTQSGRLMHVMMTKIHH GKVYHFRA+RQ+AES+GQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 61 GNDEDAEKAEK 72
          G  E+ E AEK
Sbjct: 61 GIAENVENAEK 71

[Close]

BLAST of Sed0025305 vs. ExPASy TrEMBL
Match: A0A6J1KGB8 (uncharacterized protein LOC111493644 OS=Cucurbita maxima OX=3661 GN=LOC111493644 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-25
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MKKGMHPQQQWISYVTQSGRLMHVMMTKIHHTGKVYHFRARRQLAESIGQIAKFKRRYEK 60
          MKKG+HPQ QWISYVTQSGRLMHVMMTKIHH GKVY FRARRQLAES+GQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYQFRARRQLAESVGQIAKFKRRYEK 60

Query: 61 G---NDEDAEKAEK 72
              NDE  EKAEK
Sbjct: 61 DIVENDESVEKAEK 74

[Close]

BLAST of Sed0025305 vs. ExPASy TrEMBL
Match: A0A5N6RT12 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020296 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.7e-24
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MKKGMHPQQQWISYVTQSGRLMHVMMTKIHHTGKVYHFRARRQLAESIGQIAKFKRRYEK 60
          MKKG+HPQ QWISYVTQSGRLMHV MTKIHH GKVYHFRA+RQ+AES+GQIAKFKRR+E 
Sbjct: 1  MKKGLHPQLQWISYVTQSGRLMHVSMTKIHHVGKVYHFRAKRQMAESLGQIAKFKRRFEG 60

Query: 61 GNDED 66
          GNDED
Sbjct: 61 GNDED 65

[Close]

BLAST of Sed0025305 vs. ExPASy TrEMBL
Match: A0A2I4ESM8 (uncharacterized protein LOC108992325 OS=Juglans regia OX=51240 GN=LOC108992325 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.7e-24
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MKKGMHPQQQWISYVTQSGRLMHVMMTKIHHTGKVYHFRARRQLAESIGQIAKFKRRY-E 60
          MKKG+HPQ QWISYVTQSGRLMHVMMTKIHH GKVYHFRA+RQ+AESIGQ+AKFKRRY E
Sbjct: 1  MKKGLHPQLQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESIGQVAKFKRRYEE 60

Query: 61 KGNDEDAE 68
          KGN ED E
Sbjct: 61 KGNAEDNE 68

[Close]

BLAST of Sed0025305 vs. TAIR 10
Match: AT5G55125.1 (Ribosomal protein L31 )

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-25
Identity = 54/71 (76.06%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1  MKKGMHPQQQWISYVTQSGRLMHVMMTKIHHTGKVYHFRARRQLAESIGQIAKFKRRYEK 60
          MKKG+HPQ QWISYVTQSGRLMHVMMT+IHH GKVYHF A+RQ+A+SIGQIAKFKRR+  
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRF-- 60

Query: 61 GNDEDAEKAEK 72
           N+++AE AE+
Sbjct: 61 -NEQEAEAAEE 68

[Close]

BLAST of Sed0025305 vs. TAIR 10
Match: AT5G55125.2 (Ribosomal protein L31 )

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-25
Identity = 54/71 (76.06%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1  MKKGMHPQQQWISYVTQSGRLMHVMMTKIHHTGKVYHFRARRQLAESIGQIAKFKRRYEK 60
          MKKG+HPQ QWISYVTQSGRLMHVMMT+IHH GKVYHF A+RQ+A+SIGQIAKFKRR+  
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRF-- 60

Query: 61 GNDEDAEKAEK 72
           N+++AE AE+
Sbjct: 61 -NEQEAEAAEE 68

The following BLAST results are available for this feature:

BLAST of Sed0025305 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946219.1	7.9e-26	87.84	uncharacterized protein LOC111450371 [Cucurbita moschata]	[more]
XP_022143125.1	3.9e-25	84.51	uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncha...	[more]
KAG7030387.1	3.9e-25	86.49	hypothetical protein SDJN02_08734, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023547264.1	5.1e-25	85.14	uncharacterized protein LOC111806134 [Cucurbita pepo subsp. pepo]	[more]
XP_022999184.1	8.7e-25	85.14	uncharacterized protein LOC111493644 [Cucurbita maxima]	[more]

BLAST of Sed0025305 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025305 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G367	3.8e-26	87.84	uncharacterized protein LOC111450371 OS=Cucurbita moschata OX=3662 GN=LOC1114503...	[more]
A0A6J1CPB3	1.9e-25	84.51	uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1KGB8	4.2e-25	85.14	uncharacterized protein LOC111493644 OS=Cucurbita maxima OX=3661 GN=LOC111493644...	[more]
A0A5N6RT12	4.7e-24	86.15	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020296 PE=4 SV=1	[more]
A0A2I4ESM8	4.7e-24	86.76	uncharacterized protein LOC108992325 OS=Juglans regia OX=51240 GN=LOC108992325 P...	[more]

BLAST of Sed0025305 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55125.1	3.2e-25	76.06	Ribosomal protein L31	[more]
AT5G55125.2	3.2e-25	76.06	Ribosomal protein L31	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37264	RIBOSOMAL PROTEIN L31	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025305.1	Sed0025305.1	mRNA
Sed0025305.2	Sed0025305.2	mRNA
Sed0025305.3	Sed0025305.3	mRNA
Sed0025305.4	Sed0025305.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome