Sed0025234 (gene) Chayote v1

Overview
NameSed0025234
Typegene
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L24
LocationLG02: 43487099 .. 43489975 (-)
RNA-Seq ExpressionSed0025234
SyntenySed0025234
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAAACCATAGCAATATAAGCAAGCGACCGAGTCGTTCTGTGGGGTTTTAACGGTATTAGGGTTTCATCAACATTTGGGCAGGAGGCTTAGCATCGCAGCGGACATGGTTCTCAAGTTCGTCAAATCCTTCGTCTCTGTTTTCATATCTTCCTACATCTGCTCTTCATTGTTATCTTTTTTCGCCTCTTTTCGTTATATGTTAACATGTTTTTTTTTTTGTTCCGTTTTTGTGAGAATTCTAGGGGATTCCGCGTTCTTGAATCTTAGAAATAGGGTTTTTCTGGTTTTCCGTCTGGGAAACTCTTAATCGATAACGAACTTCAGTGTGTGCTCGTTTGATTTTAGTGAAATTGTTAATTACTTCATTTATGAAGCAAATCACGGTTGATTTCTGCAATGTGTCTGCGTTTGAGTGTTAACGTGGTAAAACAAGTAAACTTTGGGATCAGAATCTGCTGGTTGAAAGGAAGTATTTACGATGGAAATGTAGTAGTTTTGATTGAAGGAGACGATTTAGATGAGGGGTTGTTTGTTTATCGGGCCCATTATTATTTTTCCATGGTCCTCCAAATTCAGGGCACCACTGCCCGTCCCTAGACTATGGCACCGGGAGTTTATTGGGTACATTATTGCAATCTGTTGTTTGAATACAAGTGTTGAATAATTGTTTTAGCTTCATTTTCGAAACGAAGTTCGAGAGCTTTGATTTTCAAGTGCTTAATCTAGTTCAAGGACTCTATTTGTGGGAAAAGAGAAGTACATGACATCTCATATGGTGGCATTAGCTTTTAATGAGAGATCCGTGAGTCCTGCCCTTATAGTTTGATACCGGCTTTTCAGGACTGAGCTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAGAGGCATCAGATTCATCCGGTCTGATTCTCAGGTGATTTTCATTACCATAATTTAGATATACTGAGAGATAAACTTACGAATTTCTTATCTTAATGATTTTAGAAAACTTTGTAGACACTCTTTCTTCTCTAATTGACTCCAACCTTACAATGGGGTTTGTATGTAGGCTCATTACTTCATTCATTGCTTTTTCCCTTGTGTTTTTTACTATTTCTCTGTCCATCTGTTAGGTGTTCCTCTTTGCCAACTCCAAATGCAAGAGGTACTTCCACAATCGGCTGAAGCCATCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGGTAATATAAAGGTTTTCTATGGTCATTACGTCTATATTTTTATTTTTTGTTCGTTGTGTTCAACTTAAAAGTAAGGACGAACATTGGTTGAATAGGGCCTTGGGATTTATGGAGCTTATGGATCCCATCTATAGTAGCCACTTTAGCAATGAATTTCATTTTTAGAAGGATATTACCTCAGACTGCCAGGGCCCAGAGAATGCTATGTGTTCTCCACTCTCGGACCTTGGAAAGAGAGAACCGAGGAACAAAGCAGTAGATAAGATATTAAGATCAGAGAAGGGGCCAGGCTCCCGGTGGAGCAGAGGAGACGGTTAGGATGACGAACATGGTCATCTTCGATTTTGTATAAGTTTTTTTTTTATCTGACCTGACATTTTTTAAAGAGGTCCTATTTCAGAAGATCTAGCCCATTCTTTCACTGCTTGGCAATCGTCAATAAGCCTAGGCCTCAGTCAGGTAGCTTATTTTAGAGTGAGTAAGAAGCCAGCTGAAGGTTGCCCTGAGACCGGTTCGCTGTTATGACTTCTTTACATACCACTGACAGATTTCTTTGACAACTAAATGTTGTAGAATATACTAGGTGCGGGCAGATTGGTCTTAATCACGGATATAAAAAAATTGACTTTGAAGTACCAAATATGATATGACCCCATCCTGTGGATATTCCTTCCCATATGATCTTGACCCCAATGGAAAATAGTTAATCTCCAAACGATCTCACAATGGACAACTAGTCAGGTTTCTAATTCTACCGATGGGGTGTGGTGGATTTCAGTTCCACCTAGGATTAGTTTTTACATTGAAAGTCAAGCTACTCAATATTCTCCGTGTTACAATTAACTGAGATGGCTAAATTCAGATTTAGAGTTCATAATACTTGAGTCAAGTGATAATTTGACAGTCATGTCTGGTGAAGATTTGGACACATGCTTTAACTTTCTAATCAAAACGATTTAAGTCCACCATTTGCAATAAGTGTCGAAAGTAATAATTGACAGTCATGTTCTCTCGAGTGTTGTATTCAAGGGATTGCTGTGGGCAGTTGAGATCTTTAACCATCTGATTTTGATGATTTCGTAGGATATTGCTCAAGAGGCTGTAAAGAAGCGCAGACGTGCCACCAAGAAGCCTTATTCCAGGTCCATCGTTGGTGCGACTTTGGAAGTAATCCAGAAAAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCAGCTAGAGAAGCTGCTCTGCGGTGTGTTCTCTTCGAATAGAAATGTTGTAATTCAAGCATAGCATATGAAATTGTACTGAATGTATGGATTTTGATTGAATTGCAGTGAAATCAAGGAACGGATTAAGAAGACCAAGGATGAGAAAAAGGCCAAGAAAGCAGAAGTGTTGTCCAAAACACAGAGGGTGTCAGGTAAGGGTAATGCTCCAAAGGGGGCAGCCCCGAAGGGCCCAAAGCTCGGCGGTGGCGGTGGGAAGCGTTAATCTTTTTAACTAGTTTTGTTTGCCATTTAAATTGCCAGATTTGGTAGATAGGACTTCTGATAATTTTCAGTTTGTATTACAAGAAGTGGCCTGTATTCATTTGTTAAACATATTTGTGCACTTGGCTGAATTTGGAAAAGCTCCTACAATCAAGTTCTATGCAGCTTTTTATTTTTGATTTCCA

mRNA sequence

GCAAAACCATAGCAATATAAGCAAGCGACCGAGTCGTTCTGTGGGGTTTTAACGGTATTAGGGTTTCATCAACATTTGGGCAGGAGGCTTAGCATCGCAGCGGACATGGTTCTCAAGACTGAGCTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAGAGGCATCAGATTCATCCGGTCTGATTCTCAGGTGTTCCTCTTTGCCAACTCCAAATGCAAGAGGTACTTCCACAATCGGCTGAAGCCATCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGGATATTGCTCAAGAGGCTGTAAAGAAGCGCAGACGTGCCACCAAGAAGCCTTATTCCAGGTCCATCGTTGGTGCGACTTTGGAAGTAATCCAGAAAAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCAGCTAGAGAAGCTGCTCTGCGTGAAATCAAGGAACGGATTAAGAAGACCAAGGATGAGAAAAAGGCCAAGAAAGCAGAAGTGTTGTCCAAAACACAGAGGGTGTCAGGTAAGGGTAATGCTCCAAAGGGGGCAGCCCCGAAGGGCCCAAAGCTCGGCGGTGGCGGTGGGAAGCGTTAATCTTTTTAACTAGTTTTGTTTGCCATTTAAATTGCCAGATTTGGTAGATAGGACTTCTGATAATTTTCAGTTTGTATTACAAGAAGTGGCCTGTATTCATTTGTTAAACATATTTGTGCACTTGGCTGAATTTGGAAAAGCTCCTACAATCAAGTTCTATGCAGCTTTTTATTTTTGATTTCCA

Coding sequence (CDS)

ATGGTTCTCAAGACTGAGCTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAGAGGCATCAGATTCATCCGGTCTGATTCTCAGGTGTTCCTCTTTGCCAACTCCAAATGCAAGAGGTACTTCCACAATCGGCTGAAGCCATCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGGATATTGCTCAAGAGGCTGTAAAGAAGCGCAGACGTGCCACCAAGAAGCCTTATTCCAGGTCCATCGTTGGTGCGACTTTGGAAGTAATCCAGAAAAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCAGCTAGAGAAGCTGCTCTGCGTGAAATCAAGGAACGGATTAAGAAGACCAAGGATGAGAAAAAGGCCAAGAAAGCAGAAGTGTTGTCCAAAACACAGAGGGTGTCAGGTAAGGGTAATGCTCCAAAGGGGGCAGCCCCGAAGGGCCCAAAGCTCGGCGGTGGCGGTGGGAAGCGTTAA

Protein sequence

MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGKR
Homology
[Close]
BLAST of Sed0025234 vs. NCBI nr
Match: XP_022951028.1 (60S ribosomal protein L24 [Cucurbita moschata] >XP_023005944.1 60S ribosomal protein L24 [Cucurbita maxima] >XP_023538770.1 60S ribosomal protein L24 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.7 bits (753), Expect = 5.1e-76
Identity = 156/164 (95.12%), Postives = 161/164 (98.17%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIR+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV++K+Q+  GKGN PKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]
BLAST of Sed0025234 vs. NCBI nr
Match: KAG6596527.1 (60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028061.1 60S ribosomal protein L24 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.7 bits (753), Expect = 5.1e-76
Identity = 156/164 (95.12%), Postives = 161/164 (98.17%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIR+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV++K+Q+  GKGN PKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]
BLAST of Sed0025234 vs. NCBI nr
Match: XP_038719496.1 (60S ribosomal protein L24-like [Tripterygium wilfordii] >KAF5737502.1 hypothetical protein HS088_TW13G00385 [Tripterygium wilfordii])

HSP 1 Score: 292.7 bits (748), Expect = 1.9e-75
Identity = 158/164 (96.34%), Postives = 162/164 (98.78%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV+SK+Q+ +GKGN PKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMSKSQK-TGKGNVPKGAAPKGPKLGGGGGKR 163

[Close]
BLAST of Sed0025234 vs. NCBI nr
Match: XP_018836192.1 (60S ribosomal protein L24 [Juglans regia] >XP_042944316.1 60S ribosomal protein L24 [Carya illinoinensis] >KAF5473629.1 hypothetical protein F2P56_010229 [Juglans regia] >KAG2682855.1 hypothetical protein I3760_10G003600 [Carya illinoinensis] >KAG6637989.1 hypothetical protein CIPAW_10G003400 [Carya illinoinensis] >KAG6690224.1 hypothetical protein I3842_10G003700 [Carya illinoinensis])

HSP 1 Score: 291.6 bits (745), Expect = 4.3e-75
Identity = 154/164 (93.90%), Postives = 159/164 (96.95%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+RSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRGEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV +K+Q+  GKGN PKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTAKSQKTQGKGNIPKGAAPKGPKLGGGGGKR 164

[Close]
BLAST of Sed0025234 vs. NCBI nr
Match: XP_028760594.1 (60S ribosomal protein L24-like [Prosopis alba])

HSP 1 Score: 291.2 bits (744), Expect = 5.6e-75
Identity = 153/164 (93.29%), Postives = 158/164 (96.34%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+RSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 23  MVLKTELCRFSGGKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 82

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 83  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 142

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV++K Q+  GKGN PKGAAPKGPKLGGGGGKR
Sbjct: 143 KTKDEKKAKKAEVMAKAQKAQGKGNVPKGAAPKGPKLGGGGGKR 186

[Close]
BLAST of Sed0025234 vs. ExPASy Swiss-Prot
Match: O65743 (60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.9e-74
Identity = 149/163 (91.41%), Postives = 152/163 (93.25%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIR DSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVKKRRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGK 164
           KTKDEKKAKKAEV SK Q+  GKGN  KGA PKGPK+GGGGGK
Sbjct: 121 KTKDEKKAKKAEVASKAQKSQGKGNVQKGALPKGPKMGGGGGK 163

[Close]
BLAST of Sed0025234 vs. ExPASy Swiss-Prot
Match: Q42347 (60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2)

HSP 1 Score: 267.3 bits (682), Expect = 1.1e-70
Identity = 144/164 (87.80%), Postives = 149/164 (90.85%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  SK Q+   KGN PK AAPK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]
BLAST of Sed0025234 vs. ExPASy Swiss-Prot
Match: Q9FUL4 (60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.6e-70
Identity = 145/160 (90.62%), Postives = 151/160 (94.38%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAA-PKGPKLGG 160
           KTKDEKKAKKAEV +K+Q+  GKG+  KG A PKGPKLGG
Sbjct: 121 KTKDEKKAKKAEV-TKSQKSQGKGSIAKGGAQPKGPKLGG 159

[Close]
BLAST of Sed0025234 vs. ExPASy Swiss-Prot
Match: P38666 (60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2)

HSP 1 Score: 262.3 bits (669), Expect = 3.6e-69
Identity = 146/165 (88.48%), Postives = 150/165 (90.91%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPK-GAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  SK Q+V  K N PK  AA KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]
BLAST of Sed0025234 vs. ExPASy Swiss-Prot
Match: P50888 (60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 9.0e-68
Identity = 142/164 (86.59%), Postives = 146/164 (89.02%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRFIRSDSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDI  EA KKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV    +   GKG   KG+  KGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTKSQKSQGGKGAVQKGS--KGPKLGGGGGKR 162

[Close]
BLAST of Sed0025234 vs. ExPASy TrEMBL
Match: A0A6J1L0R7 (60S ribosomal protein L24 OS=Cucurbita maxima OX=3661 GN=LOC111498802 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.4e-76
Identity = 156/164 (95.12%), Postives = 161/164 (98.17%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIR+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV++K+Q+  GKGN PKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]
BLAST of Sed0025234 vs. ExPASy TrEMBL
Match: A0A6J1GGJ5 (60S ribosomal protein L24 OS=Cucurbita moschata OX=3662 GN=LOC111453997 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.4e-76
Identity = 156/164 (95.12%), Postives = 161/164 (98.17%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIR+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV++K+Q+  GKGN PKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]
BLAST of Sed0025234 vs. ExPASy TrEMBL
Match: A0A7J7CTR2 (TRASH domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G00385 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 9.3e-76
Identity = 158/164 (96.34%), Postives = 162/164 (98.78%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV+SK+Q+ +GKGN PKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMSKSQK-TGKGNVPKGAAPKGPKLGGGGGKR 163

[Close]
BLAST of Sed0025234 vs. ExPASy TrEMBL
Match: A0A2I4FX24 (60S ribosomal protein L24 OS=Juglans regia OX=51240 GN=LOC109002760 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.1e-75
Identity = 154/164 (93.90%), Postives = 159/164 (96.95%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+RSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRGEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV +K+Q+  GKGN PKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTAKSQKTQGKGNIPKGAAPKGPKLGGGGGKR 164

[Close]
BLAST of Sed0025234 vs. ExPASy TrEMBL
Match: A0A7J7DN96 (60S ribosomal protein L24-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW05G00570 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.5e-75
Identity = 157/164 (95.73%), Postives = 161/164 (98.17%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV +K+Q+  GKGNAP+GAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEV-TKSQKTQGKGNAPRGAAPKGPKLGGGGGKR 163

[Close]
BLAST of Sed0025234 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 267.3 bits (682), Expect = 8.1e-72
Identity = 144/164 (87.80%), Postives = 149/164 (90.85%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  SK Q+   KGN PK AAPK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]
BLAST of Sed0025234 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 262.3 bits (669), Expect = 2.6e-70
Identity = 146/165 (88.48%), Postives = 150/165 (90.91%), Query Frame = 0 

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLSKTQRVSGKGNAPK-GAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  SK Q+V  K N PK  AA KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]
BLAST of Sed0025234 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12
Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = 0 

Query: 3   LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+F+R+D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

[Close]
BLAST of Sed0025234 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12
Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = 0 

Query: 3   LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+F+R+D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

The following BLAST results are available for this feature:
BLAST of Sed0025234 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022951028.15.1e-7695.1260S ribosomal protein L24 [Cucurbita moschata] >XP_023005944.1 60S ribosomal pro... [more]
KAG6596527.15.1e-7695.1260S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. sororia] >KAG7... [more]
XP_038719496.11.9e-7596.3460S ribosomal protein L24-like [Tripterygium wilfordii] >KAF5737502.1 hypothetic... [more]
XP_018836192.14.3e-7593.9060S ribosomal protein L24 [Juglans regia] >XP_042944316.1 60S ribosomal protein ... [more]
XP_028760594.15.6e-7593.2960S ribosomal protein L24-like [Prosopis alba][more]
BLAST of Sed0025234 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O657432.9e-7491.4160S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1[more]
Q423471.1e-7087.8060S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2[more]
Q9FUL45.6e-7090.6360S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1[more]
P386663.6e-6988.4860S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2[more]
P508889.0e-6886.5960S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1[more]
BLAST of Sed0025234 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1L0R72.4e-7695.1260S ribosomal protein L24 OS=Cucurbita maxima OX=3661 GN=LOC111498802 PE=3 SV=1[more]
A0A6J1GGJ52.4e-7695.1260S ribosomal protein L24 OS=Cucurbita moschata OX=3662 GN=LOC111453997 PE=3 SV=... [more]
A0A7J7CTR29.3e-7696.34TRASH domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW1... [more]
A0A2I4FX242.1e-7593.9060S ribosomal protein L24 OS=Juglans regia OX=51240 GN=LOC109002760 PE=3 SV=1[more]
A0A7J7DN963.5e-7595.7360S ribosomal protein L24-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW05... [more]
BLAST of Sed0025234 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G36620.18.1e-7287.80ribosomal protein L24 [more]
AT3G53020.12.6e-7088.48Ribosomal protein L24e family protein [more]
AT2G44860.11.9e-1235.94Ribosomal protein L24e family protein [more]
AT2G44860.21.9e-1235.94Ribosomal protein L24e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 112..132
NoneNo IPR availableGENE3D6.10.250.1270coord: 69..137
e-value: 2.1E-22
score: 81.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..164
NoneNo IPR availablePANTHERPTHR10792:SF4260S RIBOSOMAL PROTEIN L24-RELATEDcoord: 1..164
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 6..58
IPR011017TRASH domainSMARTSM007464TRASHcoord: 8..46
e-value: 3.4E-4
score: 29.9
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3D2.30.170.20Ribosomal protein L24ecoord: 3..64
e-value: 2.8E-33
score: 116.0
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 3..67
e-value: 3.2E-28
score: 97.8
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 1..164
IPR000988Ribosomal protein L24e-relatedCDDcd00472Ribosomal_L24e_L24coord: 3..56
e-value: 3.21277E-20
score: 76.8422
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 10..27

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0025234.1Sed0025234.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002181 cytoplasmic translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome