Sed0025197 (gene) Chayote v1

Overview


Name	Sed0025197
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CCHC-type domain-containing protein
Location	LG10: 7562440 .. 7566816 (+)
RNA-Seq Expression	Sed0025197
Synteny	Sed0025197

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTCAATTGTTGGTGTATATGATGGAAAAGAGCATTATGAAGGAGGTAACACAGGGAGAAATGATTATGGAGGAAGAAGTAATAAGCCTCATTGGAGAATCAAAAATGCTAAAATAGATGGTAATGTTGAAAGGATTGAGATGGAGGACAATGCAAAACAGATAATGGATTTAAAAACTAACAGCAAGAGGGATTTGAACCCAGATATAGAAAAGGAGGCAGAGAGTTCAGAAAATAATAGTGGAAAAACTCACATTGATTATAATGCAATGAACAACAGGAGATCTACTAAAATGATGGAGGAAGTTATGACTGCAAATATAGACCCAGAGACTTTAAAAATTGATGATGTTGAAGAGTTTGTTTGGCCAAAAGATTTAAATAGTACAGAAACTAGGGTGGTGAACTGTGTAAAAATTAGAAAATTTAAAGGATTGAAGAGGGAAGAAAATCCTTCGGCAATGAAGATTGTAGAGTACAATGGAGAAAAAGGTAAGAGGAAGCTGGAGCCTGATTCTATTGTTAACCACTCTAGAAAAAGATTCTGCAATATTGATAAGCTTAATAATGAATTGGTGGTGGCTGTTGAACAGCCCCACCTAGAGCCATGAAAACGATTTGTTGGAACGTCCGAGGGGTGGGCAATCCAAGGACGTTCGCTGATATTTGGGATGTTGTAAACATCCATAAGCCCACAGTGTTGTTTTTTTTCTGAAACAAAGTGTAATGCTGCGAAGATTGATTCTATTAAAGCTCGATTGCAATTTGAGTTTGGGTTTGCGGTGGATAGCAAAGGTTTGAGTGGTGGTTTGGCTCTTTTATGGAAGAATAGTATTGATCTTAGTATCCTATCCTATTCTAAAAATCATATTGATTGTTTCATAATTTCTAATGGCAAGCATTGGAGATTTACTGGTATCTACGGCTATCCAGAATCCAATCTTAAGCATTTAACATGGGAGCTAATTCAGAAGTTAAATGATGTTAAAGATTATCCGTGGTGTATTGGTGGAGACTTTAATGAAGCATTGTGGTCTAATGAAAAGAAAGGTGGTTCATTAGATGATTCTGGTTCTATGGAACATTTTAGAAAGATGATTGGGGATATGTGTCTCCAAGATTTGGGCTTTTTTGGTGATAAATTTACCTGGTGTAACAGGTGGACTAATGGTGCTCCAATCTTTAAAAGACTTGATCGTTTCTTAGGAAATGAAGCTCTTGGTGTTCTTTTTCCTGGCTTTAAGGTGACTCACCTAGACTGGTTTGTTTCTGATCATAAGCCTATATGTGTTGATCTTGAAAGGATCTCAGGTTGGAATAGAAGGGGCCATTCTCGATTTAGCTTTGAGGAATTTTGGATTGAAGATGCTGAGTGTATTGATTTGATTAGAAATGGTTGGGAAGCTATGAACCAGAAGAACAAAAAGCTTATTGACCATTTAGCAAATTGCAGAATTAAACTGTGGAATTGGGGAAATAGGAAAAAAAAGGATAAATGGGAGTCTATTAATAGGCTTCGTCTTCTTATTCTAGAAGAATTTACTAATATGAATTGGGGCAGATTTTAAAAAGATCCAAGTCTTTGAAAGATAGCTTGATAGTTTGGCAATTGACGAAGAAAAATACTGGAAACAACGTTCTAGAGAAAATTGGCTTCATTGAGGTGACCGCAATACGAAATGGTTCCACAAGAAGGCTTCAATTCGACGGGCGAGGAATTCTATTCATGGTGTGATTGATAGTAATGGTCAGTGGGTGACTTCGGATGAAGAGATCCATAATGCTTTTAAAGATTACTTTGTTAATCTTTTTACATCTTCCAATCCTAAAGAGATGAGGTTTTTGCGGCTTTGGAGAATGTTCCTCTGAGAGTTTCTGAAGAAATGAATTTAAACTTATGTGCTCCCTTCTCTGAAGAGGAAATTAAAGTTGTTGTTTTTCAGATGTTTCCAACCAAAGCCCTAGGACTAGATGGTTTTCCAGCTCTCTTCTATCAGAAATATTGGAGTATTGTGAAAGATCAGACAATTAAGTCTTGCCTTGAGGTATTATCTCAAAAAACTTCAGCTAAAGAGGTCAATCATTCTCACATTGTTTTGATTCTTCAAAAGGACAAACCGGTTGAAATGAGTGAATTTAGGCTAATAAGCCTTTGTAATGTCAGCTATAAGATCATTTCTAAAGTGATTGTTAATCGAATGAAGGATGTTCTGAATCAAATCATCTTTGAATTCCAAAGTGCTTTTGTCCCTGACCGTTTGATTTCGGATAGCCTTCTTGTAGGTTACGAATGTATTCATCATGTTTCAAATAAGAGATCAGGAAGAGCAGGTGAAATGGCGATTAAACTTGACATGAGTAAGCCTTATGACCATGTAGAATGGAATTTTTTGCGGAACATCATGAAGAGGCTTGGTTTTTGTAATCAATGGATTAACCTGGTCATGGATTGTGTTTCCTCGGTTTCTTTCTCTATTTTATTAAATGGAGAGGCTGGAAATGTGTTTTATCCAAAACGTTGTCTTAGACAAGGAGATCCTCTTTCCCCCTACTTATTCATCCTATGTTCAGAGAGTTTATCTTGTATGCTTTCTGCGGCTCAAAGAAATAGAATTATCTCTGGTTGTTTGGTCTCTCGTAGGAGTCCAGCTATTTCCCATTTGTTTTTTGCTGATGATAGCTTACTTTTTTGTAAAGCCTCTTTTCAGGAAATTATAGCTATCAGAGATATTCTTCGAACTTATGAAAGAGGATCTGGCCAAATTGTGAATCCCTCTAAATCAGCTGCTTTATTCAGCCCAAATGTTCCTATGCACGCTAGAAACTATTTGGCTAGTTGTTTGCAAATGCCAGTTGTTTTGAATCATGGGCACTATTTGGGTCTCCCTTCTCATTTCTCTAAAACCCGTTCGCGTGACCTTACATATATTAAGGAGAAAATGATGAAGACAGTTAGTAGTTGGAAAGGGAATTTTTTCTCTATTGCGGGTAAGGAGATCCTAATCAAAGCGGTAGCTCAGGCAATCCCAATTTATGTGATGTCATGTGTTAGAGTGCCCCAAGTTCTTTGTCGTCAATTATCTCAGATTCTAGCAAAGTTCTGGTGGGGTTCTACAATGACAAAATCCAAAATTCATTGGACCAGTTGGGATGTTCTTAGCATTCCTAAAAATAGGGGCGAATTAGGTTTTAAAGACCTGGAAGGTTTTAACCAATCTTTGGTGGCAAAACAAGTGTGGAGACTCATCCAGCATCCATCTTCTTTGGTTGGGAGGATTTTTAGGGGAAAATATTTTCCTAATGGATCTATTTTGGAGGCTAAAGAAGGGTTTGGCTCTTCTTTTGTGTGGAAAAACATTCTTTGGGACAGAGACTTAATTAAAAAGAGGTTGAGGAAGCGCATTGGCAATGGTGTTGACACTTTGGTGTTTGATTCTCCTTGGATTCCTAGGTGAAATTCTTTCAAGGTAATTACAATTCCTAGTCCTGTGAATAAGAATTTGTGTGTTTCTGATCTATTGACCAGTAGTGGTATTTGAAATCGTGAGTTGATACAGAACATTCTTTGGCCAGTTGATCAAAATTTGGTGTTATCAATTCCCATTTGTGGTTCTTCTTTACTGGATAAATGGATCTGGCATTACTCTAGAGATGGGATCTTCTCGGTTAAAAGTGCTTACAAGCTTTATTTGAATTCTAAAATAACTGAATCAACCTCTTGTTCTGATGTTTTATCCAATTGGTGGAAAACGTTGTGGGGTATGTGTGTGCCCTCTAAGATCAAATTTCTTATATGGAAAGTGTTCAACAATTTCATCCCTATTATGTAGAATTTATACAGCAAAAGAATCTCACAGTCTGCTTTATGCCCTATTTGTAATAGCCATGAAGAAAATTTAACCCATACCTTTTTTATGTGCCATCATGCAAAATCGCTATGGTCCTTGATGTTTCCTGAGCTTGCATCCCTTGCTAATAGTTTTGTTGGGAATGCTCAAGATATTTTAATTAGGCTTGCTGGATCTTTGTCTACTCAGGATTTCGAAAAAGCCTGCGTTGTTGTATGGGTTATTTGGAATGATAGAAATAAGTTGATCAGAAAGGAGAATATTTTAACAGAAGTTGATAGAGCTTATTGGGTGGAAAATTACCTAAAAGAGTTTCAGAAAATTAATCTAAAAAGTGTTCTTGTTGCTGATCATTCCCCGCCAGCGCCATTGATGTCTTCGAAAGTTTGGATGCCGCCTAGAAGGGGTGCTTTTAAGCTGTCGGTGGATGCAACTTGTCGACCGAATTGCTCTAAAATAGGTTGCGGCGTGATTGTTCGGGATCATCGCGGTTTTGGTATTATTGCTGCTGCTCATCTTTTTTAG

mRNA sequence

ATGGGGTCAATTGTTGGTGTATATGATGGAAAAGAGCATTATGAAGGAGGTAACACAGGGAGAAATGATTATGGAGGAAGAAGTAATAAGCCTCATTGGAGAATCAAAAATGCTAAAATAGATGGTAATGTTGAAAGGATTGAGATGGAGGACAATGCAAAACAGATAATGGATTTAAAAACTAACAGCAAGAGGGATTTGAACCCAGATATAGAAAAGGAGGCAGAGAGTTCAGAAAATAATAGTGGAAAAACTCACATTGATTATAATGCAATGAACAACAGGAGATCTACTAAAATGATGGAGGAAGTTATGACTGCAAATATAGACCCAGAGACTTTAAAAATTGATGATGTTGAAGAGTTTGTTTGGCCAAAAGATTTAAATAGTACAGAAACTAGGGTGGTGAACTGTGTAAAAATTAGAAAATTTAAAGGATTGAAGAGGGAAGAAAATCCTTCGGCAATGAAGATTGTAGAGTACAATGGAGAAAAAGCCCCACCTAGAGCCATGAAAACGATTTGTTGGAACGTCCGAGGGATTGATTCTATTAAAGCTCGATTGCAATTTGAGTTTGGGTTTGCGGTGGATAGCAAAGATTATCCGTGGTGTATTGGTGGAGACTTTAATGAAGCATTGTGGTCTAATGAAAAGAAAGGTGGTTCATTAGATGATTCTGGTTCTATGGAACATTTTAGAAAGATGATTGGGGATATGTGTCTCCAAGATTTGGGCTTTTTTGGTGATAAATTTACCTGGTGTAACAGTTTTGTTGGGAATGCTCAAGATATTTTAATTAGGCTTGCTGGATCTTTGTCTACTCAGGATTTCGAAAAAGCCTGCGTTGTTGTATGGGTTATTTGGAATGATAGAAATAAGTTGATCAGAAAGGAGAATATTTTAACAGAAGTTGATAGAGCTTATTGGGTGGAAAATTACCTAAAAGAGTTTCAGAAAATTAATCTAAAAAGTGTTCTTGTTGCTGATCATTCCCCGCCAGCGCCATTGATGTCTTCGAAAGTTTGGATGCCGCCTAGAAGGGGTGCTTTTAAGCTGTCGGTGGATGCAACTTGTCGACCGAATTGCTCTAAAATAGGTTGCGGCGTGATTGTTCGGGATCATCGCGGTTTTGGTATTATTGCTGCTGCTCATCTTTTTTAG

Coding sequence (CDS)

ATGGGGTCAATTGTTGGTGTATATGATGGAAAAGAGCATTATGAAGGAGGTAACACAGGGAGAAATGATTATGGAGGAAGAAGTAATAAGCCTCATTGGAGAATCAAAAATGCTAAAATAGATGGTAATGTTGAAAGGATTGAGATGGAGGACAATGCAAAACAGATAATGGATTTAAAAACTAACAGCAAGAGGGATTTGAACCCAGATATAGAAAAGGAGGCAGAGAGTTCAGAAAATAATAGTGGAAAAACTCACATTGATTATAATGCAATGAACAACAGGAGATCTACTAAAATGATGGAGGAAGTTATGACTGCAAATATAGACCCAGAGACTTTAAAAATTGATGATGTTGAAGAGTTTGTTTGGCCAAAAGATTTAAATAGTACAGAAACTAGGGTGGTGAACTGTGTAAAAATTAGAAAATTTAAAGGATTGAAGAGGGAAGAAAATCCTTCGGCAATGAAGATTGTAGAGTACAATGGAGAAAAAGCCCCACCTAGAGCCATGAAAACGATTTGTTGGAACGTCCGAGGGATTGATTCTATTAAAGCTCGATTGCAATTTGAGTTTGGGTTTGCGGTGGATAGCAAAGATTATCCGTGGTGTATTGGTGGAGACTTTAATGAAGCATTGTGGTCTAATGAAAAGAAAGGTGGTTCATTAGATGATTCTGGTTCTATGGAACATTTTAGAAAGATGATTGGGGATATGTGTCTCCAAGATTTGGGCTTTTTTGGTGATAAATTTACCTGGTGTAACAGTTTTGTTGGGAATGCTCAAGATATTTTAATTAGGCTTGCTGGATCTTTGTCTACTCAGGATTTCGAAAAAGCCTGCGTTGTTGTATGGGTTATTTGGAATGATAGAAATAAGTTGATCAGAAAGGAGAATATTTTAACAGAAGTTGATAGAGCTTATTGGGTGGAAAATTACCTAAAAGAGTTTCAGAAAATTAATCTAAAAAGTGTTCTTGTTGCTGATCATTCCCCGCCAGCGCCATTGATGTCTTCGAAAGTTTGGATGCCGCCTAGAAGGGGTGCTTTTAAGCTGTCGGTGGATGCAACTTGTCGACCGAATTGCTCTAAAATAGGTTGCGGCGTGATTGTTCGGGATCATCGCGGTTTTGGTATTATTGCTGCTGCTCATCTTTTTTAG

Protein sequence

MGSIVGVYDGKEHYEGGNTGRNDYGGRSNKPHWRIKNAKIDGNVERIEMEDNAKQIMDLKTNSKRDLNPDIEKEAESSENNSGKTHIDYNAMNNRRSTKMMEEVMTANIDPETLKIDDVEEFVWPKDLNSTETRVVNCVKIRKFKGLKREENPSAMKIVEYNGEKAPPRAMKTICWNVRGIDSIKARLQFEFGFAVDSKDYPWCIGGDFNEALWSNEKKGGSLDDSGSMEHFRKMIGDMCLQDLGFFGDKFTWCNSFVGNAQDILIRLAGSLSTQDFEKACVVVWVIWNDRNKLIRKENILTEVDRAYWVENYLKEFQKINLKSVLVADHSPPAPLMSSKVWMPPRRGAFKLSVDATCRPNCSKIGCGVIVRDHRGFGIIAAAHLF

Homology

[Close]

BLAST of Sed0025197 vs. NCBI nr
Match: XP_022145060.1 (uncharacterized protein LOC111014578 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-12
Identity = 45/137 (32.85%), Postives = 73/137 (53.28%), Query Frame = 0


Query: 251 FTWCNSFVGNAQDILIRLAGSLSTQDFEKACVVVWVIWNDRNKLIRKENILTEVDRAYWV 310
           F  C+ F  + QD L+ L  SLST DF+   V VW IWNDRN +  +  I     R+ W+
Sbjct: 60  FPQCD-FNNSVQDGLLYLVESLSTPDFDLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWI 119

Query: 311 ENYLKEFQKINLKSV---LVADHSPPAPLMSSKVWMPPRRGAFKLSVDATCRPNCSKIGC 370
             Y+++FQ  ++ S+    + + +          W PP  G  K++VDA C+ +  + G 
Sbjct: 120 LTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDAACKKHQFRTGI 179

Query: 371 GVIVRDHRGFGIIAAAH 385
           G++ R+ +G  + AA+H
Sbjct: 180 GIVCRNEKGQILAAASH 195

[Close]

BLAST of Sed0025197 vs. NCBI nr
Match: XP_030498035.1 (uncharacterized protein LOC115713693 [Cannabis sativa])

HSP 1 Score: 79.3 bits (194), Expect = 7.9e-11
Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 251 FTWCNSFVGNAQDILIRLAGSLSTQDFEKACVVVWVIWNDRNKLIRKENILTEVDRAYWV 310
           F    + VG   D +  LA  LS Q+ E   V++WVIW DRNK+   E+    +  A + 
Sbjct: 348 FNKAQNMVGG--DYIFHLATLLSQQELELVFVIMWVIWTDRNKINHGESRRDGMALANYA 407

Query: 311 ENYLKEFQKINLKSVLVADHSPPAPLMSSKV----WMPPRRGAFKLSVDATCRPNCSKIG 370
            NY++ + K N +   V +   PA + +       W PP     KL+VDA   P    +G
Sbjct: 408 TNYMENYHKANNRPTAVTEPVTPAQISTLPTEGIPWKPPDMYGLKLNVDAAVNPTSKVLG 467

Query: 371 CGVIVRDHRGFGIIAAAHL 386
            G IVR+++G  + A + L
Sbjct: 468 VGAIVRNYKGEVMAAMSKL 484

[Close]

BLAST of Sed0025197 vs. NCBI nr
Match: KAF5443558.1 (hypothetical protein F2P56_036105, partial [Juglans regia])

HSP 1 Score: 73.6 bits (179), Expect = 4.3e-09
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 200 DYPWCIGGDFNEALWSNEKKGGSLDDSGSMEHFRKMIGDMCLQDLGFFGDKFTWCNSFVG 259
           D PW +GGDFNE L  NEK+GG       ME FR +I D  L+DLGF G K+TWCN   G
Sbjct: 129 DGPWLVGGDFNELLHFNEKRGGRPRSENQMEAFRNVIFDCSLRDLGFRGPKYTWCNGRAG 188

Query: 260 N 261
           +
Sbjct: 189 S 189

[Close]

BLAST of Sed0025197 vs. NCBI nr
Match: TXG50387.1 (hypothetical protein EZV62_022911 [Acer yangbiense])

HSP 1 Score: 73.2 bits (178), Expect = 5.6e-09
Identity = 42/157 (26.75%), Postives = 73/157 (46.50%), Query Frame = 0


Query: 226 SGSMEHFRKMIGDMCLQDLGFFGDKFTWCNSFVGNAQDILIRLAGSLSTQDFEKACVVVW 285
           + ++E +R+++GD  +Q +             V +   I++ L  S+ +  F    +  W
Sbjct: 176 NSAVEVWRQLLGDDVIQRI------------VVSDFPSIILSLWRSVDSVVFNLLIIGYW 235

Query: 286 VIWNDRNKLIRKENILTEVDRAYWVENYLKEFQKIN-LKSVLVADHSPPAPLMSSKVWMP 345
            +W +RN ++         D   W++N+  EF+  N L    V  H P         W  
Sbjct: 236 RLWTNRNSVVHGSAGWAAADMVTWIDNFANEFRLANELNHKEVLSHQPS--------WKT 295

Query: 346 PRRGAFKLSVDATCRPNCSKIGCGVIVRDHRGFGIIA 382
           P+RG FK++ DA+ +    K G GVI+RD++G  I A
Sbjct: 296 PKRGEFKINCDASFQLRSGKAGVGVIIRDYKGSAIAA 312

[Close]

BLAST of Sed0025197 vs. NCBI nr
Match: XP_030483481.1 (uncharacterized protein LOC115700065 [Cannabis sativa])

HSP 1 Score: 72.8 bits (177), Expect = 7.4e-09
Identity = 41/139 (29.50%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 248  GDKFTWCNSFVGNAQDILIRLAGSLSTQDFEKACVVVWVIWNDRNKLIRKENILTEVDRA 307
            G  F W  +   N  D L+ L+   S  + E    ++W IW +RN++I  +   + V  A
Sbjct: 1067 GFHFDWNAAVQMNKGDYLVYLSTIHSKLEMESIICILWSIWTERNRIIHGKKAKSTVLLA 1126

Query: 308  YWVENYLKEFQKINLK----SVLVADHSPPAPLMSSKVWMPPRRGAFKLSVDATCRPNCS 367
             +  NYL  +     K          + PPAP+  S  W PP  G+ K++VDA    + +
Sbjct: 1127 SFATNYLSNYHHAQAKYRPPEATANQNPPPAPVPDSP-WRPPDPGSLKMNVDAAINASTN 1186

Query: 368  KIGCGVIVRDHRGFGIIAA 383
            ++G G ++R+ +G  +IAA
Sbjct: 1187 QMGIGAVIRNCQG-AVIAA 1203

[Close]

BLAST of Sed0025197 vs. ExPASy TrEMBL
Match: A0A6J1CTE3 (uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014578 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-12
Identity = 45/137 (32.85%), Postives = 73/137 (53.28%), Query Frame = 0


Query: 251 FTWCNSFVGNAQDILIRLAGSLSTQDFEKACVVVWVIWNDRNKLIRKENILTEVDRAYWV 310
           F  C+ F  + QD L+ L  SLST DF+   V VW IWNDRN +  +  I     R+ W+
Sbjct: 60  FPQCD-FNNSVQDGLLYLVESLSTPDFDLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWI 119

Query: 311 ENYLKEFQKINLKSV---LVADHSPPAPLMSSKVWMPPRRGAFKLSVDATCRPNCSKIGC 370
             Y+++FQ  ++ S+    + + +          W PP  G  K++VDA C+ +  + G 
Sbjct: 120 LTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDAACKKHQFRTGI 179

Query: 371 GVIVRDHRGFGIIAAAH 385
           G++ R+ +G  + AA+H
Sbjct: 180 GIVCRNEKGQILAAASH 195

[Close]

BLAST of Sed0025197 vs. ExPASy TrEMBL
Match: A0A803PE40 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.8e-11
Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 251  FTWCNSFVGNAQDILIRLAGSLSTQDFEKACVVVWVIWNDRNKLIRKENILTEVDRAYWV 310
            F    + VG   D +  LA  LS Q+ E   V++WVIW DRNK+   E+    +  A + 
Sbjct: 901  FNKAQNMVGG--DYIFHLATLLSQQELELVFVIMWVIWTDRNKINHGESRRDGMALANYA 960

Query: 311  ENYLKEFQKINLKSVLVADHSPPAPLMSSKV----WMPPRRGAFKLSVDATCRPNCSKIG 370
             NY++ + K N +   V +   PA + +       W PP     KL+VDA   P    +G
Sbjct: 961  TNYMENYHKANNRPTAVTEPVTPAQISTLPTEGIPWKPPDMYGLKLNVDAAVNPTSKVLG 1020

Query: 371  CGVIVRDHRGFGIIAAAHL 386
             G IVR+++G  + A + L
Sbjct: 1021 VGAIVRNYKGEVMAAMSKL 1037

[Close]

BLAST of Sed0025197 vs. ExPASy TrEMBL
Match: A0A803PQV1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.5e-10
Identity = 42/123 (34.15%), Postives = 61/123 (49.59%), Query Frame = 0


Query: 263 DILIRLAGSLSTQDFEKACVVVWVIWNDRNKLIRKENILTEVDRAYWVENYLKEFQKINL 322
           D +  LA  LS Q+ E   V++WVIW DRNK+   E+    +  A +  NY+  +QK   
Sbjct: 223 DYIFHLATLLSQQELELFFVIIWVIWTDRNKINHGESRRDGLALANYATNYMGNYQKAKN 282

Query: 323 KSVLVADHSPPAPLMSSKV----WMPPRRGAFKLSVDATCRPNCSKIGCGVIVRDHRGFG 382
               V++ + P   ++  +    W PP     KL+VDA   P    +G G IVR+H G  
Sbjct: 283 HPTAVSEPTVPTSTITLPLEGIPWKPPDMLGLKLNVDAAVNPISKVLGVGAIVRNHNGEV 342

[Close]

BLAST of Sed0025197 vs. ExPASy TrEMBL
Match: A0A803Q8J4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-09
Identity = 41/125 (32.80%), Postives = 62/125 (49.60%), Query Frame = 0


Query: 260  NAQDILIRLAGSLSTQDFEKACVVVWVIWNDRNKLIRKENILTEVDRAYWVENYLKEFQK 319
            N +D L +++ + +  + E     +W IW+DRN +I  ++       +   +N+L  ++ 
Sbjct: 1564 NIEDFLFQISENYTKSELETIFCTMWSIWSDRNNVIHGKSPQQPTVISAKAQNFLNNYKS 1623

Query: 320  INLKSVLVADHSPPAPLMSSKVWMPPRRGAFKLSVDATCRPNCSKIGCGVIVRDHRGFGI 379
                S L A  SPPA    SK W PP     KL+VDA     C+KIG G I+RD  G   
Sbjct: 1624 TQQLS-LPAGLSPPATPSISKAWSPPPPTCLKLNVDAAFDEACNKIGFGAIIRDSNGNVK 1683

Query: 380  IAAAH 385
             A +H
Sbjct: 1684 AAMSH 1687

[Close]

BLAST of Sed0025197 vs. ExPASy TrEMBL
Match: A0A803PLQ2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-09
Identity = 40/126 (31.75%), Postives = 58/126 (46.03%), Query Frame = 0


Query: 263 DILIRLAGSLSTQDFEKACVVVWVIWNDRNKLIRKENILTEVDRAYWVENYLKEFQKINL 322
           D L+ L+  LS QDFE    ++W IW DRNK++             +   +L++F +   
Sbjct: 5   DYLLNLSTVLSQQDFELMLCILWGIWTDRNKVVHGGTPRQPAAIVNYAVRFLEDFTRARK 64

Query: 323 KSVLVADHSPPAPLMSSKV-------WMPPRRGAFKLSVDATCRPNCSKIGCGVIVRDHR 382
            +   A  S   P  SS         W PP+   FK++VDA       K+G G ++RDH 
Sbjct: 65  STPPAAATSSEIPATSSTATVQQAAKWQPPQFNGFKMNVDAATNEEQKKLGIGALIRDHN 124

The following BLAST results are available for this feature:

BLAST of Sed0025197 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145060.1	3.2e-12	32.85	uncharacterized protein LOC111014578 [Momordica charantia]	[more]
XP_030498035.1	7.9e-11	32.37	uncharacterized protein LOC115713693 [Cannabis sativa]	[more]
KAF5443558.1	4.3e-09	54.10	hypothetical protein F2P56_036105, partial [Juglans regia]	[more]
TXG50387.1	5.6e-09	26.75	hypothetical protein EZV62_022911 [Acer yangbiense]	[more]
XP_030483481.1	7.4e-09	29.50	uncharacterized protein LOC115700065 [Cannabis sativa]	[more]

BLAST of Sed0025197 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025197 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTE3	1.5e-12	32.85	uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A803PE40	3.8e-11	32.37	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803PQV1	5.5e-10	34.15	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803Q8J4	1.2e-09	32.80	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803PLQ2	2.1e-09	31.75	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Sed0025197 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 188..333 e-value: 4.7E-5 score: 25.2
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 199..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025197.1	Sed0025197.1	mRNA