Sed0025166 (gene) Chayote v1

Overview


Name	Sed0025166
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG04: 29511858 .. 29514177 (-)
RNA-Seq Expression	Sed0025166
Synteny	Sed0025166

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTCCAAGGGGGGCCATCATCTTCTTAGCTCTGCCTCCAACATCATACCTCGGCGACGTGAAATTCAAGCTTCACACTTACTTTGATCAGACCCACATGGAACCTTCTCAGAATTTTTATTCCTACTATAGTTTGAAAATTACAATGCATCAAGAAATTGATGAAGCCATTATAATTACCAAAATAAACAGAGTTCCAATGTCATTTTATACAATTTTTTTTTTTTTTTTTTGAAATCTCATTTTATACAATTTAGTAACCTATGATTCAATATAATTTATCTTCGGATATTATTGAATTCTAAAATTTAAAGTGAACATAACTCAATTGACATCATGATGTATTAATAATGAAGAGGTTTGAAATTTGAATACATCATCCTCTAAACTTAGTGATATTAAATCTTCACTTGCAACATAAGCATGGTTCACGTTTGTATTAAATATCTATTTTGGATGAAAATTTTAGAGTTCAATAAATAAAAATATAACCCGTTACCTTTTTTTTCCCTCTTTTCAAAAGTTTCCGGTTACCCTCATCATTTATATTTCATGTTTTTATTTATTTATTTATTTTTCATTTTAAAATTTTTATTTCGTTGTAATGTAATTACTCATCGATCGCTAATTAAAAATAAAGGAACAAACTTATTGATTGTTTGTCTCTGAAGCTCTCGTCACGAGGCTGTTCGAAGAAATTGCAAATTCCGACTCAACTCGGCGTTCACAAGGTGGCGAGTGATCGGAAGCAACGCGGATCTGAACCGTGAACTCAACGGAAAGCGATTCAAGTTTCTAAGAACAAATTCCATTAATTCTGCGTTTTAGGTTTTTTTGGATCTTAGGAAATCCAACAATGGAGGAGGAAGGTTGTTCGATCTCCAGAGCAGTGGCGGCGACGGCCTGCACGACCATGGCTCTGTAAGTTGTTCGTTTACCGCCTCCTACTTCTCTTCAAGTTTACACGATTCGTCGGTTTCTGTGCGCCTTCGTTTCCACCGCCGCGTCAATCCTCGTCTGCGCTTTCATCCTTCCTGTAAGCTTCACTTCAGTTTCCTTTTTCCGGTCAATCATATCTGAAAGGATGACTATATTGTTTGTATTTGAACTACTGGCCTGTTCAATATTCATTTATATCTGTTTGGAACAATCTTAAGTTTGAAAAAAGAAATCGAGGCTGTTTCGTTTGAAAAAAGAAATCGAGGCTGTTTCGTTGTTAGGAAATGTTTTGATGTGGTTCACTTCAGACAAAATGGTCAATCAATATACTGTACATAAGGTTCCTAAGGGGTGGCGCAGTAGTTGAAGACTTGGGCATTGAGGGTATGCACCCCTCAAGGTCCCGAGTTTGAGTCTTCCCTGTGACAGAACTCCTCTCCGGAGCCTGGCCTAGAGACGGGTGTGGTTACCTTGTCAAAAAAAAAAAAAAACTGTCCATAACATACACTGTTTTAGTGAGAAATATTTATCATGTGAACCGTTAGTAATCTAACTGGAATTGGTTGAAGGTATTTTTTTTATGGATTTGTCAATTTTAGGAAAAGTAAAAAAAGAAAGAAAAGAAAAACGAAGTACATTTTGATTATTTTTTAAAAAAGTTTGTTCATCTTGAGTTTGCAATCAGGGAGCTTAACCGGTGAATGAACTTCTTCTACCACTGTACTAACTAATGTCTAATAGACTGGGAACAAAAAAAACATGCATACATAAACATAATACCTTTCTATTAAGCAAGTAGGCAGCTTACTATGGGATATAAAATGAACCAAGCAATGTAATTGATAAATTGGAGGTTTGAGTTTGTTACTTTTTATTACCATGAAAAGAGATTAATTGAGTTTGACGATCCAATTGATCAAGGCATATACTCTCGAATCTCGATCAAAAGGGTCAAGGTTTGATTCCTCCACCGCTAGTCGTTGATGACTAGAAGAAGATTACAATGAAAAGGAAGATATTATGTAAAGATGACTTTTGTTCCCCATTTTTTAAGTAGAAGAGATCCCAGGAATTCGTAATTCATTTAGGCTTTATAACTCTCGCTATAAGTGCTTAGCCCATAATTTACAATTCTACATATTTGTCTGTGCTAGCTTTCCATCATAATGCTGACTTTTCTCATCTTATTTTTTTTCATGCTAGATAAGAAGAATGGACTTTTCTCTTTTATTAGCAGCTTATGGCATTTGAGCAGATCATATTGTAAGTTTCAATATCTTCTCCTCCATCAAATAATAAAACATGGTATTAGCCAAGGTTTTCTTTAACATTTTATTCAATTTTATAATCTTGTAGTCTGCAGATTGGAAAGGTGA

mRNA sequence

ATGGATTCTCCAAGGGGGGCCATCATCTTCTTAGCTCTGCCTCCAACATCATACCTCGGCGACGTGAAATTCAAGCTTCACACTTACTTTGATCAGACCCACATGGAACCTTCTCAGAATTTTTATTCCTACTATAGTTTGAAAATTACAATGCATCAAGAAATTGATGAAGCCATTATAATTACCAAAATAAACAGAGTTCCAATCTCTCGTCACGAGGCTGTTCGAAGAAATTGCAAATTCCGACTCAACTCGGCGTTCACAAGGTGGCGAGTGATCGGAAGCAACGCGGATCTGAACCGTGAACTCAACGGAAAGCGATTCAAGAAATCCAACAATGGAGGAGGAAGGTTGTTCGATCTCCAGAGCAGTGGCGGCGACGGCCTGCACGACCATGGCTCTGTAAGTTGTTCGTTTACCGCCTCCTACTTCTCTTCAAGTTTACACGATTCGTCGGTTTCTGTGCGCCTTCGTTTCCACCGCCGCGTCAATCCTCGTCTGCGCTTTCATCCTTCCTATAAGAAGAATGGACTTTTCTCTTTTATTAGCAGCTTATGGCATTTGAGCAGATCATATTTCTGCAGATTGGAAAGGTGA

Coding sequence (CDS)

ATGGATTCTCCAAGGGGGGCCATCATCTTCTTAGCTCTGCCTCCAACATCATACCTCGGCGACGTGAAATTCAAGCTTCACACTTACTTTGATCAGACCCACATGGAACCTTCTCAGAATTTTTATTCCTACTATAGTTTGAAAATTACAATGCATCAAGAAATTGATGAAGCCATTATAATTACCAAAATAAACAGAGTTCCAATCTCTCGTCACGAGGCTGTTCGAAGAAATTGCAAATTCCGACTCAACTCGGCGTTCACAAGGTGGCGAGTGATCGGAAGCAACGCGGATCTGAACCGTGAACTCAACGGAAAGCGATTCAAGAAATCCAACAATGGAGGAGGAAGGTTGTTCGATCTCCAGAGCAGTGGCGGCGACGGCCTGCACGACCATGGCTCTGTAAGTTGTTCGTTTACCGCCTCCTACTTCTCTTCAAGTTTACACGATTCGTCGGTTTCTGTGCGCCTTCGTTTCCACCGCCGCGTCAATCCTCGTCTGCGCTTTCATCCTTCCTATAAGAAGAATGGACTTTTCTCTTTTATTAGCAGCTTATGGCATTTGAGCAGATCATATTTCTGCAGATTGGAAAGGTGA

Protein sequence

MDSPRGAIIFLALPPTSYLGDVKFKLHTYFDQTHMEPSQNFYSYYSLKITMHQEIDEAIIITKINRVPISRHEAVRRNCKFRLNSAFTRWRVIGSNADLNRELNGKRFKKSNNGGGRLFDLQSSGGDGLHDHGSVSCSFTASYFSSSLHDSSVSVRLRFHRRVNPRLRFHPSYKKNGLFSFISSLWHLSRSYFCRLER

Homology

[Close]

BLAST of Sed0025166 vs. NCBI nr
Match: KAG6580688.1 (hypothetical protein SDJN03_20690, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-08
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 129 LHDHGSVSCSFTASYFSSSLHDSSVSVRLRFHRRVNPRLRFHPSYKKNGLFSFISSLWHL 188
           +H    +  S T+S FSSSLHDS+VSVR  FHRR++ RLR +PSYK+NG+F+ ISSL +L
Sbjct: 32  VHSPALILPSITSS-FSSSLHDSTVSVRHHFHRRLSRRLRSNPSYKENGVFTVISSLRYL 91

Query: 189 SRSY 193
           SRSY
Sbjct: 92  SRSY 94

[Close]

BLAST of Sed0025166 vs. NCBI nr
Match: KAG7017445.1 (hypothetical protein SDJN02_19310 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 4.8e-04
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 129 LHDHGSVSCSFTASYFSSSLHDSSVSVRLRFHRRVNPRLRFHPSYKKNGLFS 181
           +H    +  S T+S FSSSLHDS+VSVR  FHRR++ RLR +PSYK+NG+F+
Sbjct: 32  VHSPALILPSITSS-FSSSLHDSTVSVRHHFHRRLSRRLRSNPSYKENGVFT 82

The following BLAST results are available for this feature:

BLAST of Sed0025166 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580688.1	2.4e-08	60.94	hypothetical protein SDJN03_20690, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7017445.1	4.8e-04	57.69	hypothetical protein SDJN02_19310 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Sed0025166 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025166 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025166 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025166.1	Sed0025166.1	mRNA