Sed0025098 (gene) Chayote v1

Overview


Name	Sed0025098
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CCHC-type domain-containing protein
Location	LG08: 6433478 .. 6433894 (-)
RNA-Seq Expression	Sed0025098
Synteny	Sed0025098

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGACGTGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTAATACAATCTGGATTACACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGCAAAGGTTCTAAGAAGTCCAGCATGAGTGATGACGAATGGGAGGAAATGGATTTGAGGGCTGCAAGTGCCATCAGGTTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATAGAATATCAACAGGCAAAAAGTTTTGGGAGAAGCCTGAAGCGATGTATCAAGCAAAAAGCATTTCAAATCGGTTGTATCTGAAGGAGCAATTTTACACATTGTGA

mRNA sequence

ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGACGTGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTAATACAATCTGGATTACACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGCAAAGGTTCTAAGAAGTCCAGCATGAGTGATGACGAATGGGAGGAAATGGATTTGAGGGCTGCAAGTGCCATCAGGTTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATAGAATATCAACAGGCAAAAAGTTTTGGGAGAAGCCTGAAGCGATGTATCAAGCAAAAAGCATTTCAAATCGGTTGTATCTGAAGGAGCAATTTTACACATTGTGA

Coding sequence (CDS)

ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGACGTGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTAATACAATCTGGATTACACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGCAAAGGTTCTAAGAAGTCCAGCATGAGTGATGACGAATGGGAGGAAATGGATTTGAGGGCTGCAAGTGCCATCAGGTTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATAGAATATCAACAGGCAAAAAGTTTTGGGAGAAGCCTGAAGCGATGTATCAAGCAAAAAGCATTTCAAATCGGTTGTATCTGAAGGAGCAATTTTACACATTGTGA

Protein sequence

MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL

Homology

[Close]

BLAST of Sed0025098 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 111/138 (80.43%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGST 60
           M+ FMS VK DVEKFDG +NFGLWQVQVKDVLIQS LHKALKGRPS G SEK S DGG  
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRISTGKKFWEKPEAMY 120
           ESSGGSS+GSKKSSMS ++WEEMDLRAASAIR +LAKN+LANVHRIST K+ WEK EA+Y
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414

Query: 121 QAKSISNRLYLKEQFYTL 139
           QAK ISNRLYLKEQF+TL
Sbjct: 415 QAKGISNRLYLKEQFHTL 432

[Close]

BLAST of Sed0025098 vs. NCBI nr
Match: KAF7802225.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-37
Identity = 91/138 (65.94%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 1   MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGST 60
           M+ F S+VKFDVEKFDGR+NFGLWQVQVKDVLIQSGLHKAL+G+ S  DSEKS       
Sbjct: 1   MSKFSSAVKFDVEKFDGRINFGLWQVQVKDVLIQSGLHKALEGKVSSKDSEKS------- 60

Query: 61  ESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRISTGKKFWEKPEAMY 120
                      +SSMSD +WEE+DLRAAS IRL+LAKNVLANV  IST K+ W+K E +Y
Sbjct: 61  -----------ESSMSDGDWEELDLRAASTIRLSLAKNVLANVQGISTAKELWKKLEGLY 120

Query: 121 QAKSISNRLYLKEQFYTL 139
           QAK ISN L LKEQF+TL
Sbjct: 121 QAKGISNWLMLKEQFHTL 120

[Close]

BLAST of Sed0025098 vs. NCBI nr
Match: KAF7810708.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 161.4 bits (407), Expect = 5.6e-36
Identity = 89/138 (64.49%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 1   MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGST 60
           M+ F S++KFDVEKFDGR+NFG WQVQVKDVLIQSGL KAL+G+ S  DSEKS       
Sbjct: 49  MSKFSSAMKFDVEKFDGRINFGWWQVQVKDVLIQSGLQKALEGKVSSKDSEKS------- 108

Query: 61  ESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRISTGKKFWEKPEAMY 120
                      +SSMSD +WEE+DLRAAS IRL LAKNVLANV  IST K+ W+K E +Y
Sbjct: 109 -----------ESSMSDGDWEELDLRAASTIRLCLAKNVLANVQGISTAKELWKKLEGLY 168

Query: 121 QAKSISNRLYLKEQFYTL 139
           QAK ISNRL LKEQF+TL
Sbjct: 169 QAKGISNRLLLKEQFHTL 168

[Close]

BLAST of Sed0025098 vs. NCBI nr
Match: KAF5463231.1 (hypothetical protein F2P56_019161 [Juglans regia])

HSP 1 Score: 161.0 bits (406), Expect = 7.3e-36
Identity = 85/133 (63.91%), Postives = 105/133 (78.95%), Query Frame = 0


Query: 6   SSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGG 65
           +S++++VEKFDGR+NFGLWQVQVKDVLIQSGLHKALKGRP    + + S D   T+ +  
Sbjct: 8   NSIRYEVEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRP----TPEVSSDTSVTDQT-- 67

Query: 66  SSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRISTGKKFWEKPEAMYQAKSI 125
                 +S MSD++WE++DLRAASAIRL LAKNVLAN+H IST KK WEK E +YQ K +
Sbjct: 68  ----KSRSVMSDEDWEDLDLRAASAIRLCLAKNVLANIHGISTAKKLWEKLEELYQTKGV 127

Query: 126 SNRLYLKEQFYTL 139
           SNR+YLKEQF+TL
Sbjct: 128 SNRVYLKEQFHTL 130

[Close]

BLAST of Sed0025098 vs. NCBI nr
Match: KAF3622233.1 (hypothetical protein FXO38_31400 [Capsicum annuum] >KAF3630407.1 hypothetical protein FXO37_28487 [Capsicum annuum])

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-35
Identity = 88/134 (65.67%), Postives = 106/134 (79.10%), Query Frame = 0


Query: 5   MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSG 64
           +   KF++EKFDGR+NFG+WQVQVKDVLIQSGLHKALK RP+   SEK + D   +E   
Sbjct: 69  LEGTKFEIEKFDGRINFGVWQVQVKDVLIQSGLHKALKERPT---SEKGNKDSEKSE--- 128

Query: 65  GSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRISTGKKFWEKPEAMYQAKS 124
            SSK S+KS +SD+EWEE+D++AAS IRL LAKNVLANV  +ST K+ WEK E +YQ KS
Sbjct: 129 -SSKDSEKSKISDEEWEELDMKAASQIRLYLAKNVLANVIGLSTTKELWEKLEELYQTKS 188

Query: 125 ISNRLYLKEQFYTL 139
           ISNRLYLKEQF+ L
Sbjct: 189 ISNRLYLKEQFHKL 195

[Close]

BLAST of Sed0025098 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.1e-17
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 0


Query: 5   MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSG 64
           MS VK++V KF+G   F  WQ +++D+LIQ GLHK L                       
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVL----------------------- 60

Query: 65  GSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRISTGKKFWEKPEAMYQAKS 124
                 K  +M  ++W ++D RAASAIRL+L+ +V+ N+    T +  W + E++Y +K+
Sbjct: 61  -DVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKT 110

Query: 125 ISNRLYLKEQFYTL 139
           ++N+LYLK+Q Y L
Sbjct: 121 LTNKLYLKKQLYAL 110

[Close]

BLAST of Sed0025098 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 7.4e-50
Identity = 111/138 (80.43%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGST 60
           M+ FMS VK DVEKFDG +NFGLWQVQVKDVLIQS LHKALKGRPS G SEK S DGG  
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRISTGKKFWEKPEAMY 120
           ESSGGSS+GSKKSSMS ++WEEMDLRAASAIR +LAKN+LANVHRIST K+ WEK EA+Y
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414

Query: 121 QAKSISNRLYLKEQFYTL 139
           QAK ISNRLYLKEQF+TL
Sbjct: 415 QAKGISNRLYLKEQFHTL 432

[Close]

BLAST of Sed0025098 vs. ExPASy TrEMBL
Match: A0A6A3CWI3 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001713pilonHSYRG00162 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.7e-34
Identity = 84/132 (63.64%), Postives = 102/132 (77.27%), Query Frame = 0


Query: 7   SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGS 66
           S +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S  +G   +    S
Sbjct: 2   SFRFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPA------SLSEGKEPDKPSDS 61

Query: 67  SKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRISTGKKFWEKPEAMYQAKSIS 126
           S    KS MS++EWEE+D+RAAS IRL LAKNVLANV R S+ K+ WEK E MYQAKS+S
Sbjct: 62  SGDKGKSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLS 121

Query: 127 NRLYLKEQFYTL 139
           NRLYLKE+F+ L
Sbjct: 122 NRLYLKEKFHKL 127

[Close]

BLAST of Sed0025098 vs. ExPASy TrEMBL
Match: A0A6A3BK59 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110050pilonHSYRG00143 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.7e-34
Identity = 84/132 (63.64%), Postives = 102/132 (77.27%), Query Frame = 0


Query: 7   SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGS 66
           S +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S  +G   +    S
Sbjct: 2   SFRFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPA------SLSEGKEPDKPSDS 61

Query: 67  SKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRISTGKKFWEKPEAMYQAKSIS 126
           S    KS MS++EWEE+D+RAAS IRL LAKNVLANV R S+ K+ WEK E MYQAKS+S
Sbjct: 62  SGDKGKSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLS 121

Query: 127 NRLYLKEQFYTL 139
           NRLYLKE+F+ L
Sbjct: 122 NRLYLKEKFHKL 127

[Close]

BLAST of Sed0025098 vs. ExPASy TrEMBL
Match: A0A2G2YJH4 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_25006 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.4e-34
Identity = 84/135 (62.22%), Postives = 100/135 (74.07%), Query Frame = 0


Query: 4   FMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESS 63
           +M   KF++EKFDGR+NFGLWQVQVKDVLIQSGLHKALK RP+ G  +K S         
Sbjct: 245 YMMGTKFEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKERPTSGKGDKDS-------KK 304

Query: 64  GGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRISTGKKFWEKPEAMYQAK 123
             SS+ S+KS +SD+EWEE+D++  S IRL LAK VL NV  +ST KK WEK E +YQ K
Sbjct: 305 FESSEDSEKSRISDEEWEELDMKVESQIRLCLAKYVLTNVIGLSTTKKLWEKLEELYQTK 364

Query: 124 SISNRLYLKEQFYTL 139
           SISNRLYLKEQF+ L
Sbjct: 365 SISNRLYLKEQFHKL 372

[Close]

BLAST of Sed0025098 vs. ExPASy TrEMBL
Match: A0A6A2YS90 (Transcription initiation factor IIA subunit 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111273pilonHSYRG00172 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-33
Identity = 83/130 (63.85%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 9   KFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSK 68
           +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S  +G   +    SS 
Sbjct: 90  RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPA------SLSEGKEPDKPSDSSG 149

Query: 69  GSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRISTGKKFWEKPEAMYQAKSISNR 128
              KS MS++EWEE+D+RAAS IRL LAKNVLANV R S+ K+ WEK E MYQAKS+SNR
Sbjct: 150 DKGKSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNR 209

Query: 129 LYLKEQFYTL 139
           LYLKE+F+ L
Sbjct: 210 LYLKEKFHKL 213

The following BLAST results are available for this feature:

BLAST of Sed0025098 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	1.5e-49	80.43	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
KAF7802225.1	1.7e-37	65.94	cytochrome p450 [Senna tora]	[more]
KAF7810708.1	5.6e-36	64.49	cytochrome p450 [Senna tora]	[more]
KAF5463231.1	7.3e-36	63.91	hypothetical protein F2P56_019161 [Juglans regia]	[more]
KAF3622233.1	1.3e-35	65.67	hypothetical protein FXO38_31400 [Capsicum annuum] >KAF3630407.1 hypothetical pr...	[more]

BLAST of Sed0025098 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.1e-17	35.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Sed0025098 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG82	7.4e-50	80.43	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6A3CWI3	5.7e-34	63.64	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A6A3BK59	5.7e-34	63.64	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A2G2YJH4	7.4e-34	62.22	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_25006 PE=3 SV=1	[more]
A0A6A2YS90	1.3e-33	63.85	Transcription initiation factor IIA subunit 2 OS=Hibiscus syriacus OX=106335 GN=...	[more]

BLAST of Sed0025098 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 80..138 e-value: 1.4E-8 score: 34.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..80
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 5..138
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 5..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025098.1	Sed0025098.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044271	cellular nitrogen compound biosynthetic process
biological_process	GO:0010467	gene expression
biological_process	GO:0009059	macromolecule biosynthetic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding