Sed0025088 (gene) Chayote v1

Overview


Name	Sed0025088
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG04: 41008225 .. 41008538 (-)
RNA-Seq Expression	Sed0025088
Synteny	Sed0025088

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCATTATATCATCTCCAAAACAAAAAAGCAAAAATCCCACTTTTCTCCTCTTTCCCCTTCTCCTCCATAGCCAAAACCTCCAACATGGCTCATCCTAAGATCATCAGGATCAAAGCTCTTCTTCTTCTTGCCCTCATCGCTCTTGCTGCTCGAGTTTGTAGCTCTGCCTGTCGTCCACCGTGCTACGGCATGGCGGTCACCCGAGCTCAAGAACATGGAGAAATAGAAGAGGGACCATTGGATGATGAAACAAGGAACAATGATCCTTACAGAATGTATGGGGATGTTCCAAGCCCTGGTGTTGGCCACTGA

mRNA sequence

CCTCATTATATCATCTCCAAAACAAAAAAGCAAAAATCCCACTTTTCTCCTCTTTCCCCTTCTCCTCCATAGCCAAAACCTCCAACATGGCTCATCCTAAGATCATCAGGATCAAAGCTCTTCTTCTTCTTGCCCTCATCGCTCTTGCTGCTCGAGTTTGTAGCTCTGCCTGTCGTCCACCGTGCTACGGCATGGCGGTCACCCGAGCTCAAGAACATGGAGAAATAGAAGAGGGACCATTGGATGATGAAACAAGGAACAATGATCCTTACAGAATGTATGGGGATGTTCCAAGCCCTGGTGTTGGCCACTGA

Coding sequence (CDS)

ATGGCTCATCCTAAGATCATCAGGATCAAAGCTCTTCTTCTTCTTGCCCTCATCGCTCTTGCTGCTCGAGTTTGTAGCTCTGCCTGTCGTCCACCGTGCTACGGCATGGCGGTCACCCGAGCTCAAGAACATGGAGAAATAGAAGAGGGACCATTGGATGATGAAACAAGGAACAATGATCCTTACAGAATGTATGGGGATGTTCCAAGCCCTGGTGTTGGCCACTGA

Protein sequence

MAHPKIIRIKALLLLALIALAARVCSSACRPPCYGMAVTRAQEHGEIEEGPLDDETRNNDPYRMYGDVPSPGVGH

Homology

[Close]

BLAST of Sed0025088 vs. NCBI nr
Match: KAG6599948.1 (hypothetical protein SDJN03_05181, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 3.5e-24
Identity = 62/80 (77.50%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1   MAHPKIIRIKALLLLAL----IALAARVCSSACRPPCYGMAVTRAQEHGE-IEEGPLDDE 60
           M HP IIRI+ALLLLAL      LAARVC++ACRPPCYG+AVTRAQEH E +EEG LDDE
Sbjct: 35  MGHPSIIRIRALLLLALTVFVFVLAARVCNAACRPPCYGVAVTRAQEHDEDMEEGALDDE 94

Query: 61  TRNNDPYRMYGDVPSPGVGH 76
           T++NDPYRMYGDVPSPGVGH
Sbjct: 95  TKDNDPYRMYGDVPSPGVGH 114

[Close]

BLAST of Sed0025088 vs. NCBI nr
Match: KGN50727.1 (hypothetical protein Csa_005780 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-16
Identity = 52/81 (64.20%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MAHPKI---IRIKALLLLALI---ALAARVCSSACRPPCYGMAVTRAQEHGEIEEGPLDD 60
          M H KI   IRIK LLLLAL+        VCSSACR PC+ +A+ RAQEH EI +G LDD
Sbjct: 1  MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD 60

Query: 61 ETRNNDPYRMYGDVPSPGVGH 76
          ++++NDPYRMYGDVPSPGVGH
Sbjct: 61 DSKDNDPYRMYGDVPSPGVGH 81

[Close]

BLAST of Sed0025088 vs. ExPASy TrEMBL
Match: A0A0A0KQN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G220900 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.8e-17
Identity = 52/81 (64.20%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MAHPKI---IRIKALLLLALI---ALAARVCSSACRPPCYGMAVTRAQEHGEIEEGPLDD 60
          M H KI   IRIK LLLLAL+        VCSSACR PC+ +A+ RAQEH EI +G LDD
Sbjct: 1  MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD 60

Query: 61 ETRNNDPYRMYGDVPSPGVGH 76
          ++++NDPYRMYGDVPSPGVGH
Sbjct: 61 DSKDNDPYRMYGDVPSPGVGH 81

The following BLAST results are available for this feature:

BLAST of Sed0025088 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599948.1	3.5e-24	77.50	hypothetical protein SDJN03_05181, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN50727.1	1.2e-16	64.20	hypothetical protein Csa_005780 [Cucumis sativus]	[more]

BLAST of Sed0025088 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025088 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQN4	5.8e-17	64.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G220900 PE=4 SV=1	[more]

BLAST of Sed0025088 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025088.1	Sed0025088.1	mRNA