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Sed0025078 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATAAACTTTCCTTTTGCTTTTACCAATGGCTTCAATGTCTGCTCAAGCCCCTAGTGAATGGACTGCAACACAAAACAAAGCATTTGAAAAGGCTTTGGCAGAGTTTGACAAAGACACTCCTGAAAGATGGCAGAATGTTGCGAACGCCATTGGTGGAAAAACTGCACAAGAAGTGAAGAGCCATTATGACCTTCTTGTGTTGGATGTTATACGTATCGAGAATGAACCGATTCTCTTCCCTTATCGACGAGCTGACAGATAATATCTCTTGAGCATTGCTAAACTTTGAAGTTTTAAGTTTTCTCTCTCTTTTAATGTCTTTGAATCAGTTATCTTACGCTAGAACCCCCGAAACTTAAGTTCTATGGCGATTATTATTTAGGTCTTTCGTTTTGGTCTTTAATACTTGGTCTTGGTCTTTTATGTTTAGGGTTTAAGTGGGCTCCTATACATCAACTCTAACTCTCAACTGGTACCACGTGTTTAGGGTTTATGTTTAGTTCTATGGCGATTAAC AATAAACTTTCCTTTTGCTTTTACCAATGGCTTCAATGTCTGCTCAAGCCCCTAGTGAATGGACTGCAACACAAAACAAAGCATTTGAAAAGGCTTTGGCAGAGTTTGACAAAGACACTCCTGAAAGATGGCAGAATGTTGCGAACGCCATTGGTGGAAAAACTGCACAAGAAGTGAAGAGCCATTATGACCTTCTTGTGTTGGATGTTATACGTATCGAGAATGAACCGATTCTCTTCCCTTATCGACGAGCTGACAGATAATATCTCTTGAGCATTGCTAAACTTTGAAGTTTTAAGTTTTCTCTCTCTTTTAATGTCTTTGAATCAGTTATCTTACGCTAGAACCCCCGAAACTTAAGTTCTATGGCGATTATTATTTAGGTCTTTCGTTTTGGTCTTTAATACTTGGTCTTGGTCTTTTATGTTTAGGGTTTAAGTGGGCTCCTATACATCAACTCTAACTCTCAACTGGTACCACGTGTTTAGGGTTTATGTTTAGTTCTATGGCGATTAAC ATGGCTTCAATGTCTGCTCAAGCCCCTAGTGAATGGACTGCAACACAAAACAAAGCATTTGAAAAGGCTTTGGCAGAGTTTGACAAAGACACTCCTGAAAGATGGCAGAATGTTGCGAACGCCATTGGTGGAAAAACTGCACAAGAAGTGAAGAGCCATTATGACCTTCTTGTGTTGGATGTTATACGTATCGAGAATGAACCGATTCTCTTCCCTTATCGACGAGCTGACAGATAA MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR Homology
BLAST of Sed0025078 vs. NCBI nr
Match: KAE8645640.1 (hypothetical protein Csa_020521 [Cucumis sativus]) HSP 1 Score: 107.1 bits (266), Expect = 7.1e-20 Identity = 56/79 (70.89%), Postives = 61/79 (77.22%), Query Frame = 0
BLAST of Sed0025078 vs. NCBI nr
Match: XP_008447026.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo]) HSP 1 Score: 105.5 bits (262), Expect = 2.1e-19 Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 0
BLAST of Sed0025078 vs. NCBI nr
Match: XP_022952660.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_022952661.1 protein RADIALIS-like 1 [Cucurbita moschata] >XP_023554744.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 105.1 bits (261), Expect = 2.7e-19 Identity = 54/78 (69.23%), Postives = 58/78 (74.36%), Query Frame = 0
BLAST of Sed0025078 vs. NCBI nr
Match: KAA0036165.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK19711.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]) HSP 1 Score: 104.4 bits (259), Expect = 4.6e-19 Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 0
BLAST of Sed0025078 vs. NCBI nr
Match: XP_022136064.1 (protein RADIALIS-like 1 [Momordica charantia]) HSP 1 Score: 103.6 bits (257), Expect = 7.9e-19 Identity = 51/74 (68.92%), Postives = 59/74 (79.73%), Query Frame = 0
BLAST of Sed0025078 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 2.2e-19 Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 0
BLAST of Sed0025078 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 1.8e-18 Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 0
BLAST of Sed0025078 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 1.2e-17 Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 0
BLAST of Sed0025078 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 5.9e-17 Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 0
BLAST of Sed0025078 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 1.4e-15 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 0
BLAST of Sed0025078 vs. ExPASy TrEMBL
Match: A0A0A0K3K0 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 1.0e-19 Identity = 53/78 (67.95%), Postives = 60/78 (76.92%), Query Frame = 0
BLAST of Sed0025078 vs. ExPASy TrEMBL
Match: A0A1S3BGF0 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 1.0e-19 Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 0
BLAST of Sed0025078 vs. ExPASy TrEMBL
Match: A0A6J1GKV1 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455288 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 1.3e-19 Identity = 54/78 (69.23%), Postives = 58/78 (74.36%), Query Frame = 0
BLAST of Sed0025078 vs. ExPASy TrEMBL
Match: A0A5A7T3V4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold214G00070 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 2.2e-19 Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 0
BLAST of Sed0025078 vs. ExPASy TrEMBL
Match: A0A6J1I8Y0 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471083 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 3.8e-19 Identity = 53/78 (67.95%), Postives = 58/78 (74.36%), Query Frame = 0
BLAST of Sed0025078 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 ) HSP 1 Score: 95.9 bits (237), Expect = 1.5e-20 Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 0
BLAST of Sed0025078 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 ) HSP 1 Score: 92.8 bits (229), Expect = 1.3e-19 Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 0
BLAST of Sed0025078 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 ) HSP 1 Score: 90.1 bits (222), Expect = 8.4e-19 Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 0
BLAST of Sed0025078 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 ) HSP 1 Score: 90.1 bits (222), Expect = 8.4e-19 Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 0
BLAST of Sed0025078 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein ) HSP 1 Score: 87.8 bits (216), Expect = 4.2e-18 Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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