Sed0025049 (gene) Chayote v1

Overview


Name	Sed0025049
Type	gene
Organism	Sechium edule (Chayote v1)
Description	pentatricopeptide repeat-containing protein At4g18975, chloroplastic
Location	LG06: 2900775 .. 2912743 (-)
RNA-Seq Expression	Sed0025049
Synteny	Sed0025049

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGAAGGCAGCGGTTTGGTGTAGGGAAGCATGTTCGTTCGGAGGTTTTATCGGGCAGCAGCGCCTCTGTTGCGAAACCTAACTGTAAGCTTTTCTTTTCTCTTTCAATGCTTCGATTTCAGTTCCCATTTCCATTTCATCATTCGATTTCCAACCCTTACTTCATCCATCCATGAACTTATATGAACTTTCCCAAATTCGATTTTTTTTTTTTTTTTTTTTTTTTGGAAAAATAATTTCGCAGTCTCTAATTTGTAGTTTCAATCTGGTATCTGTGTTCTAAAATGGAACATTTTTACTGCTCGCTGTTAGGCTTTGATATAATGCAATTGTTATACGGGCCACTCGTGCTCCGGGTATAAGGAGGTTTCAAAAAAAGAAGTTAGTTATATAAACTAAAATATTGATAAATTGATCATTATAGGATCTATTTGATAATCATTTAGGGTATTTTTGGGCCCCGTTTATGTAAACGGTCGAGTTGGTTATAATAACTCAACCAATGTTTGCCCCACCGTTTATTATAAATGGTGGTTACCTAAACTTGCGTGCCCGTTTAACTAAACCTACGTGTCTAGTTATCTAAACCTTACATATATTACTTTTTGTTACATATCCAGCCCCTCAAACACCGTTTATCATAATCTTTGTTATAATAACTTGCCCCTCAAACACCATTTATAATAACCCACCGTTAATCATAACCCACCATTTATCATAACCTTCCGTCTATCATAACCAAACCGGTGCTCTAAACACACCTTTAGTTTTTTGTTTCTTGTTATTGACATTTAAGCCTATTTTTACTCTAATTTCTTACAATGTGTTCTACCTTTCCTATAATGTATCCATCTTTCCTTAAAAAAGTATGTGAATGATAACCAACTTTCAAAAACAAAAACAAACTTTTGGAAGCTACTTTTTTTTTGTTTCCAAATTTTGATTTTGGTTTCTACAATTATAGGTAAGAGCTAGATATCCAAGTAAGAAAAAAAGTTGTTATATGCTTAAATTTCAAAAACAAAAAACCAAATGGTTATGGGACATTAATTTTCAAGTGAACTTATTTTTAAAAGAAAATAAGTATAAAAGTAAATTAAAAAACACACTAGGACTAGACTAAAAGCGATTATTATTGAAATTTTAGTGTAAAAGTCTTGAATTTTGAAATTTAATGACCAAAATGAAACTACATCCCAAACCTAGTGTTCGAGCCAGTGTACGCGATACTGTCTAACCTTACAATATTTATATGTGAATGAAATCAGTAGGAAGTTAATTCCTTAATAGGTGGCTTCCATAGATTAAACTCACAACCTTTTCGGTTTCTCAAGGCCATTTTCTTACCACTTTGCTACCTATGGTGGTTACTTTGCCCTTATTTCTTATTTGTCTATAATGGGCAATCCAGGATTTTACCTACAGAACTAAGCCCCTGTTGGTCTAATCTGTATCGGGAACTTCAAGACCTTTGTTTGATATATTTGTTTTACCAGAATTGTGCTTTAATTTCCTATGTACTTCATTAACCTGTTTCAGGCTTCTTTTAAGGAATCTTGATTGTTTATATATGCATACACAGGTAGGACAAACAATGGAACATGGCGTCAACAGCTTGCAAGTTGGGAATTCTTTTTACAGTACAATGATGCAACCTCAAATGTGTAAACAACTTGCTGATTACAATATGAAAAATAAGGTCTTTGTCCAAAAAACTGTACAGTTCATGCTTAGACACTATGGCAGTCTTTCGAACCCTCAGCAGAGTAAATTAGTTTGGTTGATATTTTAAAGATTAGACTTTGGTAGCAGAAATTATACTAAGGTTCATGAAATATCTATCATCAATGGTTTTGAAGCAGGGAAACAGTTCTCTCTTTTTTATAATTAGGAGGATAAAATAGTGTTGGGTCCTTGTCAAGTTCTTGACTTCTTGTGCTCTTAAATCTTACTTCTAGTTTAGTCTCTTCTACTATGGTGCATTAGTTTATGTTCATATCAAGAGGATTTCTATTTTGAAATTGCAAATTCCCTTTCCCTCTGGAAGTTCGTGATCCTCGACGTAACGACTTCCCCTTCTTTATGTCTCTCTTGCTGAGTGACGTCCTGATGAGCCACGGATTTTCTCGACTCTCCACCAACTAGCGACAAACTAGGATGCATCTACCTTGAGCTTTCAGAGGATTCGTAGTTGGAGTGGTCAACTTCCTTAGAATTGGAGTTTTATATTTACCTTGTTATCTTATTGTAAAAGTGGCTCAAAACCTGGCATAACCTTGTAACGCTTTCATCTTATCAATGATTCAGGACGTTAACAATAGTAAAGCCTTGTGCCAGACTTCAGAGCGAAGTATTGGAGACATTAGAAAGCACCAAATTGGGGAGAATGTTCCAAGGGCGGACAAAATTAACTTCCTTGTAAATACGGTACGAATAAATAGGAAAATATCTTCCTCTCTTCCTTCTCTCTTTTATTTATTTATTCTTTTTTTCAAATCGAGTCTTTTCGAAATCATGTATAGGTGCGTTGTCATTGTATAGTAGGCTATTGAATTTTCAGAATAACTAATTCCAGAAGGCAAAAAGGAAAGAAAGACACTTCGAGTATTCAAATTGTATGGATAATAGTTGCATTAATGAAATTGTTTCTTATACAAAAAAATATATATTAGATATCAGAAGCTTCTGTAGCAACCTTTAAATCGAAAGAGAAATCTGTTCCTTATTCAAACATCTTTCTAAGAAATATTTAGTCACAAAGGTTCATGTTGTATGGGTTATACAAGCAGAGGCCAAACTACACAAAAGGTTCCAATGGGGAAAGACAGCTAATATGGTTTCTGCCTTTGTTGATCATTTGAGTTATGCCTTACCTTGATGGATAGGCCCTTTTGTTTTCTATAAACTTTTTTTGCAATGAAAGTTTTTCTTTTCCATGAAAAAGTATCTGACGATAATAAAAAATAAAAAAATAAATCTTATTATAAAGCAAAATGCTACAAAAAATATGTAGTCGATGGCGTGTTGGCTTAGTTGATTGGTTGTAATCCAATTCAACTCCATGGTCACCTCGGTCACGGGTTCAATCTTAAAAATCGGTATTTGACTCTCATTTTATTTGAGAACAGTAATACCCTCTATGTAGGGTTTGTGGTCTCCCTCCCCAATTTGAACTTAAAAAAATTAAAAATAAAAAATAAAAACCTTATGAGTTTTTGCTAAATTGCTAATCAGGGTAGACGCTTCATGCAAATTCAGTACTTTATGAAACAAAACTACATTATACTTTTCTCTATTATCAAAACTGACTTTTCTGCAATGGTCATGTTTTTTATGAATTTTTTGAAAAATATTATTCAACCTTGGATGTTTATGAGTTCTCTAAATGTCGCAGCTTCTCGATCTTAGAGATAGTAAAGAAGCTGTTTATGGTGCTCTTGATGCATGGGTTGCATGGGAACAAGATTTTCCAATAGCATCCCTTAAGCAGGCATTGGCTGCCCTTGAGAAGGAGCAGCAATGGCATAGAGTTGTTCAGGTAATCAAATGGATGCTGAGCAAGGGGCAGGGAAACACATTGGGAGTCTATGGGCAGTTAATCCGCGCTTTAGACATGGACCATCGAGCCGAAGAAGCACACAAGTTTTGGGTCATGAAAATTGGTTCGGATCTTCATTCAGTTCCTTGGCAAATGTGCAGGAGCATGATATCAATATACTACCGAAATAAAAGGCCAGAAGATCTTGTAAAGGTATAATTCTATCTTCATTCTGGATATGAGTCATGACTAAATGTTTAGGATATTGTTTTGTTGTTTTCCCATTTTTTCAATTAAACTGCATGGTGAAAATGAAATTTCCTCCCATATTAAAAGCTAAGAGGTGAATCTATTCCAGTTAGTGAAAATAAAATATCTTCCCAATACTTCTAGCTTCATCGAATTGGACCAAGCTCTAATTTAGTTGAGAGTTTGGTATTATTCTGATAAACCTCTTATTACTAAGGTGTACACAAGAAGGAAGAAGAGTACTTTTCTATCACGGGATAGGCGACCCTTCTAATAAGTGGTCCTCTTTTTGGGCTGTTTTTTTGTATGCCCCGTTGTATTTTTCTTTCATTTTCCCAAAATGAAAGTTCGGATCTTCATCCGAAGAAAAGAGTAAGGAAGGGATGATATAATTAAATTTATCTCAATCCTTCAGTTTAGACTTTTGGATTGATCGGTGGTTTAACATAATTGAACATGGTATCAGAGCAAGAAATCATGAGTTCGAATCTGATACGATCCCGAGATCGTTGAAGGTCTACTCGAGGCGGAAGAAGTGACAGATTTAGCCATTACTATTCTTTAATATATTTATATTTGTTTATTTAAGTTGTATTGGACTTATGGGCCTTAATATGGATTATTACTTAAATTAGGTTATCACCTAGGTTTACTATATATAGGATATGTTAGGCACTATGTTAGGTATTCAAACAGTTGTCGTCTTTGTCATTGACTCTTTGAGAGATCCTCTCGAGATATTATCGTAGTTTAATAATATTGTGTGGTAGATTCTATCATTTTGGTATCAGAGCCATTTGCCGATCCGGGAATGGTGACTACTAAGATGGAAACAAGGATGCAAGAGTGTGAGGAAGGAGCGGCCGACTTGGCGAGGAAGCTGCAGGAGACGAATACGAAGATGGAATTGATGGAGGAGCGTTTGGGAAAGAAGATAGATTCCCAGGATTTGAAGTTCGAGTCGATAACCCGGAATTTGGAACTAATAATGGAAACGATCCGGGCTGACAAAGGGAAGGGAGTGGTGACCGAGGAATCTGAGGAAGGGTCGGGCGATGCTGCTGCAGGTGGGGAGGTGGCGGCGGGAGCGACGTCGGGGAGAGGCGGCGCGGTCTGGCAAGGAGGGGGCTCGGGAGCGGGCCTGGAGCGCTGGAGCGCGAAGGGAAACGCTGGAGCGTGGGGAGTTGGGCGGACGCGGGCGCAGGGCGTGGGTCGAGGCGCGGGAGAAGGGTTCGCCGACGTGGGGGCGTAGGGTCCCGAGGGTGTGCGCGCGGGTGGCGCGGCTGGAGGGCGCCAACGAGGCGCAGGGCGCGGCCGGGCGGTGATCGCCGCGGCGGGGCGTCGGGCTGGGCGTGGGCTGGGGTGAGGATGTCGGGCCGTGCGGAGCTGGGCGCGGAGGGGGTGTCGGGTGTGCGCGGGGCGGGGCCGCACGCGGCGCGGCGTGAGGCGTCGGCGCAGGCCGGCGCGAGGGCTGTGGCTCGGGTGCAGGCGGGCCGGGTCGGGGTGGGTTGGTCGGACCGGGTCGGGTTGGGCCAGTCGGGTTGGACCGAAGGACGGAGTTTCGAGGGACTTCTGACAGGAACACTTGCACGGGGCCAGAAATTGATCGACGAGGAGACCCACGACATGACTGGGGAGGAAACGGGTTTTCGGAGGAGAGAAGGGTGCGCATTGGTCGTGATAGACCAATAGCGCATGACGGTTGGAACGATCGGAGTGGGGAGCACCACAACCCAGAGGATTGGAGAGATAGGGAGGACCGTTATGAACGGGGGGGAACGAGAACAGGGGGCAGAGAGGGACCAGTGTTCGATAGAAGACTACGAAAACTCGAGATGCCGGTTTTCAAAGGGCTTACCGATGAGGACCCGGACGGATGGCTGTGTCGAGTAGAACGATATTTTTGGGTAAATCGACCGGAAGGACGAGAACGGGTCGATCTTTGCAGCTCTGTATGGAGGGGAGGGCTTTGGAATGGCTACAGTATGAGGAAGATCGAGCCCCGATCAGTTCTTGGGAGGAATTCAGGGAACTACTGTTGCACCGTTTCCAACCCACGATTCATGACAATAAGTACGCTAATTTGATGAGCCTACAACAGGTGGGAACAGTTAAAGAGTATCAGCGACTGTTCGAGAAGTATGCGAAGGGAATGCGTGATATTAGTGCAAGTGCACTAGAAGGTAAATGGGAAAGTGGGTTGAAGGCTGAAATTAGAAGTGAAATGCGGAAACTGCGGCCTGTTGGGATTCAGGATAAGAAGTTTATGGCACAGGTAATCGAAGATGATCTTGCTTTTCGGGCTCAAGGGAAGGATGCTGGTTTTTTTCCTGTAGCGAGGCCAAGTACGGGTTCAGGGGTTGCAAGTACGAAGGGCACGAGCGGTTCATCTCTGAGAACTATAGCTTTTTCTCCGAATAGACCAGCTACTACGAGCACAGCCTCCACGGCGCCTTATAAGCGGTTGACAGATAGCGAGATACGTGTGCGAAAGGATAAAGGACTGTGTTTTCGCTGTGATGACAAATTTGTTCCGGGGCATCGATGTAAGAAGAAAGAGCTCCAGTCCTTGGAAATATTAGTAGTTCGAGATGCTCCTAATCAGGGGGACACATACGATAATGACGATTCGAGTGTAGAGGAAACTATTGATAGCGTTGAAGATACATGGGATTTTGCAGCATTGTCCTTAAATTCGTTGGCTGGGTTGAGTTCACCCAAGACATTGAAGGTCACGGGATTGATTCAAGAATTGGAGGTAGTAGTTCTTATAGACTGCGGAGCCACACATAATTTTATCTGATGTGATTGTGGAGAAGTTAAAACTGCCGGTGGAACCGTCCAATGATTATGGAATTATGTTAGGAACAGGTGAGTCTGTGAGGACAGCGGGTATTTGCAAGAATGTTGAGTTGCATTTGGCTGAGCTGAAGGTAGTTAATGATTTCTTACCGCTACCACTAGGAAGCGCCGATGTGATACTGGGAGTGGCATGGTTGGAAACGTTGGGGAAGATTGAGTTTAACTTTCGTTCGCTGAAAATGCGGTTTGTTCTGGGTTCATGGCAGGCTGAGTTACAAGGTGAACCGCGATTGGTTAAAGCACAAGTTTCCCTAAAATCCATGATGAAGTCATTACGATCTGAGGACCAGGGACTGTTGGTCGAGCTAAATATGATTGATGCGACAATACCGAAACATGTGCAGATGGATGTTTTGCCCGATTTATCTCAGGTACCCCGAGAACTACATTCGTTAATTGAATCTTTTTCACCAGTTTTTGAGCCCCTGACAGATTTACCTCCGCAAAGAAGTTGTGATCACGCAATTGAGTTAGTTAAAGGGCAAGGTTCAGTTAACGTGCGACCATATCGGTACCCGCAATACCAGAAAAACGAGATAGAGAAATTGGTACGGGAAATGTTGTTGGCAGGGGTAATCCGGCCCAGCACGAGTTCTTTTTCGAGTCCCGTGTTGCTGGTTAAAAAGAAGGATGGGAGTTGGCGATTTTGTGTTGACTACCGAGCTTTGAATCACGCTACAGTGCTTGATAAATATCCAATTCCGCTGGTGGATGAGCTTCTAGACGAACTTCATGGATCGACGGTATTCTCAAAAATAGACTTAAAGGCCGGTTATCACCAGATCCGTGTTAAGCCGTCCGATGTGCACAAGACAGCATTCCGGACCCACGAGGGCCATTATGAATTTGTAGTCATGCCGTTTGGGTTGCGAAATGCTCCTGCAACTTTCCAGTCCGTGATGAATGAAATTTCGCGCGCCTATCTGCGTAAGTTTGTGTTGGTATTTTTTGATGACATTCTTATTTACAAAGACTACCATCCAGACCACGAGAGCATCCGCTCCGGATCTTCGAGGTGTTACAGACTCACGCTTTTGTCGCCAATGCAAAAAAATGTCAATTCGGGTTACACCGCATTGAGTATCTAGGGCACTTCATATCTGCGGACGGCGTGTCGGCCGACCCAGCAAAGATTGAGGCAATGAATTGTTGGCCAAGCCCACGAAATATTAAAGAATTGCGGGGATTTCTGGGTTTGACAGGGTACTATCGTCGGTTTGTGGCGAACTATGGTTCTATGGCTTTCCCATTGACCCAGTTATTAAAGAAGGGAAAATTTGAGTGGGGACCGGTTGCGAAAGACTGCTTCCAGAGAATGAAGCATGCGATGAGTAGTGTACCGGTTCTACGATTGCCAGATTTCAATGAGGCGTTTGTGGTCGAAACCGATGCTTCTGGAATTGGAGTAGGCGCTGTTCTAATGCAACAGGGCCAACCGATTGCTTACTTTAGTAAAGCTTTGCCGATCACTCATCGAGTGAAGCCTGTGTATGAGCGCGAGTTGATGGAAATTGTCTTCGTCGTTCAGCGCTGGCGAGCGTATCTTTTGGGACACCATTTTGTTGTGCGTACTGACCAGAAAAGTCTTAAGTTTTTGCTTGAGCAGCGTGCAGTGGATGGGGAGTATCAGCGCTGGATTGCTAAGCTTATGGGATATGATTTCAGTATAGAGTACAAGAAGGGACTTGAAAACCGAGCAGCTGATGCTCTCTCTCGTATACCTCCCGTGTGAGTTCGGCATGCTGAGTTTTGTGGCTGGCATTAACACAGCAGTTTTCACGCAACAGGTTAAGGAAGATGAGAAATTGTTGGCTATTCATACAGCCTTGACAACTGGAGAGGCGGGATCGCCTGGGTATTCGGTAGTGGGAGATGTGCTGCTTTACAAGGGCAGACTAGTGTTACCGCCGACGTCTCCGACGATTCCTCTTTTATTACTTGAGTTTCACGGAGGAGCTATCGGGGGACATTTCGGAGTCCTGAAAACGTATCACCGGCTCGCTAAGGAAGTGTATTGGCAAGGGATGAAGGCCAGTGTGCGCTCGTTTGTGGCCGAATGTTCAGTTTGTGTACAAGCTAAACACTTGTCATTATCTCCTGCCGGTCTGTTACAACCATTACCAATTCCGGCACGAATTTGGGAGGACATATCGATGGATTTTGTGGAAGGACTGCCGCGTTCAGACGGTTATGACACGATATTAGTAGTGGTTGATCGCCTTTCTAAATATGCTCACTTCATTCCCCTTCTTCACCTTTTTTCGTCGTTGTCAGTGTCGAAGGTGTTTATTAAAGAGGTGGTCCATTTGCACGGGATCCCAAAAAGTATTGTGTCTGATCGTGATAAAGTTTTTACCAGTCTGCTTTGGGAAGAATTATTCAAGGCTTCGGGCACTAAACTTTGTTGTAGCACTACATATCACCCACAGACGGATGGCCAAACCGAGGTTGTGAACCGTTGTTTGGAATCTTACCTGCGTTGTTTCGTGATGAATGAACCGAAGGCCTGGTTTCAGTGGTTAGCGTGGGCCGAGTTCAGTTTTAACACATCATTCCATTCTTCCACGAACATGACACCCTTCGAGATTGTGTATGGACGACCCCCACCTCCAATTTTGGGGTATGATTATGGGGCTAGTCCGGTAGCCGCGGTGGACTCCTTGATGTTAGACCGGGATCAGGTTTTGGAGACCCTGAAAGCTAGTTTTTCGAGGGCGCAACAATCGATGTCAGACCGAGCGAACGCCAAACGCCGAGATATACAGTTCAATGTTGATGATTTGGTATATATTAAGCTTCGACCTTACCGCCAATCTTCGTTGGCAAAATTTAAACATCCCAAGTTGGCGCCAAGATTTATCGGGCCGTATCGTGTTTTAGCACGGGTGGGGCGATTATGATCGTTGGAGCTACCACCATCACTCAAGATTCACCCGGTTTTTCATGTGTCTGTTCTACGCAAAGCGGTGGGTTCTTCAGTGCTCGTCATGTCCACACCATCCATGGTGGGGAATGATTTATGCGTTGTGGTTTGCCCTAAGGCTGTATTGGGAGTGCGGGAGGACGTACAGGAGGAAGGTTCGCGTCAGGTTTTGATCCAGTGGGAGGGCTCCTCTCCGGATGATGCTACGTGGGAGTCCGCGATTGACTTGGCTTTGCAATTTCCGGATTTTCACCTTGAGGACAAGGTGGCTCTGTGGGGGGGGAAGTATTGATACGATCCCGAGATCGTTGAAGGTCTACTCGAGGCGGAAGAAGTGACAGATTTAGCCATTACTATTCTTTAATATATTTATATTTGTGTATTTAAGTTGTATTGGGCTTATGGGCCTTAATATGGATTATTACTTAAATTAGGTTATCACCTAGGTTTACTATATATAGGATATGTTAGGCACTATGTTAGGTATTCAAACAGTTGTCGTCTTTGTCATTGACTCTTTGAGAGATCCTCTCGAAAGATTATCGTAGTTTAATAATATTGTGTGGTAGATTCTATTAGAATCCCTGCCAAGTTGTTTCCTCCTCAATTAAATTAAATTCTACTTGTAGGGCATTTTTGAAATTTCAAAGTCCACAAGTGAGGGGGGGTGCTGGTTGATATAATTAAATTTATTCTAATCCATCATCTTAGGCTTTTGGATTAATCGGTAGTTTAACATAATTCAACAGTGTGCGAGGGACAGCACGTGATCTTTTTTTTAAATAGGAAATGAGATCATATATTATTAAAAATGTTGGAGTAAACTCTGGGCACCAATAGGTGAATTACATGAATAGATTCGAGTTGGAAATAAAGTAAGATAGACTACAAGAGGAAGGAATGTGCTTTATCTTTACACCAAAGGTATACCATTGTAACGATTGCCTCTAAGAAGTTATTTAAAGTCCTAGAGGCATCTCTAAATATGCGGCTATTCCTTTCTCCCCAAATTGCCCATAAGAAAGCACGTGAAAAAGAAAGCCATAAAAACTTATCCCCATTTTCAATCTTTTGCCAAAATATTTAGTCTTGTAGTCGAAATTCTCTTTTGAGAATTAGGGAAGAGAAGAGAAGAGCTCTTGAACTCCTTAGAGATCTATCATATTCTTGAGGCGAAGGAATTGATTTCTTGCTCTTAGTGTCGTAATTATGCTACCCTTTTAAATGGATGATCAAATTTGAGCAGTTTATTGTTAGCCTATGTCGTTAGTTTCATCTTCCCCTTTTTCTTCTTTTATCCATATTCTTCATAACTCTTTCTCATATCAATGAAATGATTTGTTTAGTATAAAAAAATATAATAACCATCTTGGGTTGGATCTAATAGTCAATCCATGGTGTTTGCTTACCTAGGAATAAATTTTCCTATAGGTTCTTTGACAACTAAATGTTGTAGGGTCATGAAGCTTGTTCCGTGAGAATAGTTGAACCGCGCATAAGCTGACTTAGACATTTGTGGATATAAAAATAAAATAAAACAAAGAATGAAGCTTTCCATTGAGACTCCATATTTTTATGCTTCTTAGATAGTGTTCGATTGAAGAAAAGGGAACAAAGGACACATTTGGTATCAAGTTATTTTGTAGCATCAAAGGTGATTAATACAAATATTGTAGATTCTCCTGATTCCTATGAATATTTCTAGATAGGCTGCAATTGAACTCAACATTGTAGAAACAAGTACGTACTCTTCGCAATGCTTGAAATATCGAATAATATCTATTAATGTGTAACGGTCAGAGTATTAGTGAATGTTAAATTGTCTAATCTTGGCTTCTGCATTTCAATAGCTTTTCAAGGATCTCGAAGCTTTCGGGCGTAAACCTCCAGAAAAATCAATAGTGCAGAGGGTTGCAGATTCTTATGAAATGCTGGGCTTGCTTGAAGAGAAAGAGAGGATATTAGTGAAGTACGAAGATCTTTTTACAGTGGACAAGAAAGAGGCCAAGAAATATAAGAGGATTTCGATTGCAAAATCAAAGAGAAGAAAGAAGCAAATGCAAAGGGTACCGAAGACGGGCGATCCTTGATCGTTGGAGTTGGGAGATTCGAACCCACTTTGTCTAGATTGAGTATTCGTGTCAATTATCTTTGGGTTTAGTCCACTTTTAACAAATTTAATGTAACGTTATCAAATATAAAAGAGGAATTATGTATTGGCAATTGTGTATTGCTTAAGTTATATTTCATTTATTTCAGAAACTTGGGTTATGGTTAAGTCTCCTTTAATGTTTTGGGTGTGAATATTTTGCTTTGGCTTTCTAAATAGTTGTTTTAGTTGGTAGAATTATAAATTTATTTCTAGTGTCATGTATTTTGTTCAATTTATAATGGTC

mRNA sequence

ATTTGAAGGCAGCGGTTTGGTGTAGGGAAGCATGTTCGTTCGGAGGTTTTATCGGGCAGCAGCGCCTCTGTTGCGAAACCTAACTGTAGGACAAACAATGGAACATGGCGTCAACAGCTTGCAAGTTGGGAATTCTTTTTACAGTACAATGATGCAACCTCAAATGTGTAAACAACTTGCTGATTACAATATGAAAAATAAGGACGTTAACAATAGTAAAGCCTTGTGCCAGACTTCAGAGCGAAGTATTGGAGACATTAGAAAGCACCAAATTGGGGAGAATGTTCCAAGGGCGGACAAAATTAACTTCCTTGTAAATACGCTTCTCGATCTTAGAGATAGTAAAGAAGCTGTTTATGGTGCTCTTGATGCATGGGTTGCATGGGAACAAGATTTTCCAATAGCATCCCTTAAGCAGGCATTGGCTGCCCTTGAGAAGGAGCAGCAATGGCATAGAGTTGTTCAGGTAATCAAATGGATGCTGAGCAAGGGGCAGGGAAACACATTGGGAGTCTATGGGCAGTTAATCCGCGCTTTAGACATGGACCATCGAGCCGAAGAAGCACACAAGTTTTGGGTCATGAAAATTGGTTCGGATCTTCATTCAGTTCCTTGGCAAATGTGCAGGAGCATGATATCAATATACTACCGAAATAAAAGGCCAGAAGATCTTGTAAAGCTTTTCAAGGATCTCGAAGCTTTCGGGCGTAAACCTCCAGAAAAATCAATAGTGCAGAGGGTTGCAGATTCTTATGAAATGCTGGGCTTGCTTGAAGAGAAAGAGAGGATATTAGTGAAGTACGAAGATCTTTTTACAGTGGACAAGAAAGAGGCCAAGAAATATAAGAGGATTTCGATTGCAAAATCAAAGAGAAGAAAGAAGCAAATGCAAAGGGTACCGAAGACGGGCGATCCTTGATCGTTGGAGTTGGGAGATTCGAACCCACTTTGTCTAGATTGAGTATTCGTGTCAATTATCTTTGGGTTTAGTCCACTTTTAACAAATTTAATGTAACGTTATCAAATATAAAAGAGGAATTATGTATTGGCAATTGTGTATTGCTTAAGTTATATTTCATTTATTTCAGAAACTTGGGTTATGGTTAAGTCTCCTTTAATGTTTTGGGTGTGAATATTTTGCTTTGGCTTTCTAAATAGTTGTTTTAGTTGGTAGAATTATAAATTTATTTCTAGTGTCATGTATTTTGTTCAATTTATAATGGTC

Coding sequence (CDS)

ATGTTCGTTCGGAGGTTTTATCGGGCAGCAGCGCCTCTGTTGCGAAACCTAACTGTAGGACAAACAATGGAACATGGCGTCAACAGCTTGCAAGTTGGGAATTCTTTTTACAGTACAATGATGCAACCTCAAATGTGTAAACAACTTGCTGATTACAATATGAAAAATAAGGACGTTAACAATAGTAAAGCCTTGTGCCAGACTTCAGAGCGAAGTATTGGAGACATTAGAAAGCACCAAATTGGGGAGAATGTTCCAAGGGCGGACAAAATTAACTTCCTTGTAAATACGCTTCTCGATCTTAGAGATAGTAAAGAAGCTGTTTATGGTGCTCTTGATGCATGGGTTGCATGGGAACAAGATTTTCCAATAGCATCCCTTAAGCAGGCATTGGCTGCCCTTGAGAAGGAGCAGCAATGGCATAGAGTTGTTCAGGTAATCAAATGGATGCTGAGCAAGGGGCAGGGAAACACATTGGGAGTCTATGGGCAGTTAATCCGCGCTTTAGACATGGACCATCGAGCCGAAGAAGCACACAAGTTTTGGGTCATGAAAATTGGTTCGGATCTTCATTCAGTTCCTTGGCAAATGTGCAGGAGCATGATATCAATATACTACCGAAATAAAAGGCCAGAAGATCTTGTAAAGCTTTTCAAGGATCTCGAAGCTTTCGGGCGTAAACCTCCAGAAAAATCAATAGTGCAGAGGGTTGCAGATTCTTATGAAATGCTGGGCTTGCTTGAAGAGAAAGAGAGGATATTAGTGAAGTACGAAGATCTTTTTACAGTGGACAAGAAAGAGGCCAAGAAATATAAGAGGATTTCGATTGCAAAATCAAAGAGAAGAAAGAAGCAAATGCAAAGGGTACCGAAGACGGGCGATCCTTGA

Protein sequence

MFVRRFYRAAAPLLRNLTVGQTMEHGVNSLQVGNSFYSTMMQPQMCKQLADYNMKNKDVNNSKALCQTSERSIGDIRKHQIGENVPRADKINFLVNTLLDLRDSKEAVYGALDAWVAWEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSKGQGNTLGVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPEDLVKLFKDLEAFGRKPPEKSIVQRVADSYEMLGLLEEKERILVKYEDLFTVDKKEAKKYKRISIAKSKRRKKQMQRVPKTGDP

Homology

[Close]

BLAST of Sed0025049 vs. NCBI nr
Match: XP_008455250.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucumis melo])

HSP 1 Score: 445.3 bits (1144), Expect = 4.2e-121
Identity = 228/287 (79.44%), Postives = 253/287 (88.15%), Query Frame = 0


Query: 1   MFVRRFYRAAA---PLLRNLTVGQTMEHGVNSLQVGNSFYSTMMQPQMCKQLADYNMKNK 60
           M +RRFYRAAA   PLLR+ TVG+TME GV+ LQVG S+Y TM+Q QM KQLAD + KNK
Sbjct: 1   MLIRRFYRAAAWATPLLRHPTVGKTMELGVSRLQVGCSWYCTMIQDQMYKQLADKDRKNK 60

Query: 61  DVNNSKALCQTSERSIGDIRKHQIGENVPRADKINFLVNTLLDLRDSKEAVYGALDAWVA 120
           DV+NSKAL   SE++IGDIRKH+IGENV R DKI+FLVNTLLDLRDSKEAVYGALDAWVA
Sbjct: 61  DVDNSKALGHISEQNIGDIRKHKIGENVSRKDKISFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSKGQGNTLGVYGQLIRALDMDHRAEE 180
           WEQDFPIASLK  LAALEKEQQWHR+VQVIKWMLSKGQG T+ VYGQLIRALDMDHRAEE
Sbjct: 121 WEQDFPIASLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPEDLVKLFKDLEAFGRKPPEKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQ+CRSMI+IYYRNK  EDLVKLFKDLEAFGRKPP+KSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMIAIYYRNKMLEDLVKLFKDLEAFGRKPPDKSIVQRV 240

Query: 241 ADSYEMLGLLEEKERILVKYEDLFTVDKKEAKKYKRISIAKSKRRKK 285
           AD+ EMLGLLEEKER+LVKY+ LF   ++  KKYKR+S  K KR++K
Sbjct: 241 ADACEMLGLLEEKERVLVKYKYLFDEKQESMKKYKRVSFEKPKRKRK 287

[Close]

BLAST of Sed0025049 vs. NCBI nr
Match: XP_022154414.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 444.5 bits (1142), Expect = 7.1e-121
Identity = 229/298 (76.85%), Postives = 256/298 (85.91%), Query Frame = 0


Query: 1   MFVRRFYRA---AAPLLRNLTVGQTMEHGVNSLQVGNSFYSTMMQPQMCKQLADYNMKNK 60
           M VRRF+RA     PLLR+LT GQ M+ GV+ LQVGNS Y TM+Q QMC+QLAD +MKNK
Sbjct: 25  MLVRRFHRATTWVTPLLRDLTAGQIMDLGVSRLQVGNSCYCTMVQAQMCQQLADRDMKNK 84

Query: 61  DVNNSKALCQTSERSIGDIRKHQIGENVPRADKINFLVNTLLDLRDSKEAVYGALDAWVA 120
           DVNNSKALCQ SE++ GD+RKHQIGENV R DKINFLV TL+DLR SKEAVYGALDAWVA
Sbjct: 85  DVNNSKALCQRSEQNDGDMRKHQIGENVSRKDKINFLVATLVDLRGSKEAVYGALDAWVA 144

Query: 121 WEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSKGQGNTLGVYGQLIRALDMDHRAEE 180
           WEQ+FPIASLKQ LA LEKEQQWHRVVQVIKWMLSKGQG T+ VYGQLIRALDMDHRAEE
Sbjct: 145 WEQNFPIASLKQVLAVLEKEQQWHRVVQVIKWMLSKGQGTTMRVYGQLIRALDMDHRAEE 204

Query: 181 AHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPEDLVKLFKDLEAFGRKPPEKSIVQRV 240
           +HKFWVMKIG+DLHSVPWQ+CRSMISIYYRNK  ++LVKLFKDLEAFGRKPPEKSIVQRV
Sbjct: 205 SHKFWVMKIGADLHSVPWQLCRSMISIYYRNKMLDNLVKLFKDLEAFGRKPPEKSIVQRV 264

Query: 241 ADSYEMLGLLEEKERILVKYEDLFTVDKK-EAKKYKRISIAKSKRRKKQMQRVPKTGD 295
           AD+YEMLGL EEKER+L KY+DLFT ++K   +KY +IS  KSKRR+K  +     GD
Sbjct: 265 ADAYEMLGLHEEKERVLEKYKDLFTDERKGPIQKYNKISFEKSKRRRKLTKVSKDNGD 322

[Close]

BLAST of Sed0025049 vs. NCBI nr
Match: XP_022154416.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X3 [Momordica charantia] >XP_022154418.1 pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X3 [Momordica charantia])

HSP 1 Score: 444.5 bits (1142), Expect = 7.1e-121
Identity = 229/298 (76.85%), Postives = 256/298 (85.91%), Query Frame = 0


Query: 1   MFVRRFYRA---AAPLLRNLTVGQTMEHGVNSLQVGNSFYSTMMQPQMCKQLADYNMKNK 60
           M VRRF+RA     PLLR+LT GQ M+ GV+ LQVGNS Y TM+Q QMC+QLAD +MKNK
Sbjct: 1   MLVRRFHRATTWVTPLLRDLTAGQIMDLGVSRLQVGNSCYCTMVQAQMCQQLADRDMKNK 60

Query: 61  DVNNSKALCQTSERSIGDIRKHQIGENVPRADKINFLVNTLLDLRDSKEAVYGALDAWVA 120
           DVNNSKALCQ SE++ GD+RKHQIGENV R DKINFLV TL+DLR SKEAVYGALDAWVA
Sbjct: 61  DVNNSKALCQRSEQNDGDMRKHQIGENVSRKDKINFLVATLVDLRGSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSKGQGNTLGVYGQLIRALDMDHRAEE 180
           WEQ+FPIASLKQ LA LEKEQQWHRVVQVIKWMLSKGQG T+ VYGQLIRALDMDHRAEE
Sbjct: 121 WEQNFPIASLKQVLAVLEKEQQWHRVVQVIKWMLSKGQGTTMRVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPEDLVKLFKDLEAFGRKPPEKSIVQRV 240
           +HKFWVMKIG+DLHSVPWQ+CRSMISIYYRNK  ++LVKLFKDLEAFGRKPPEKSIVQRV
Sbjct: 181 SHKFWVMKIGADLHSVPWQLCRSMISIYYRNKMLDNLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADSYEMLGLLEEKERILVKYEDLFTVDKK-EAKKYKRISIAKSKRRKKQMQRVPKTGD 295
           AD+YEMLGL EEKER+L KY+DLFT ++K   +KY +IS  KSKRR+K  +     GD
Sbjct: 241 ADAYEMLGLHEEKERVLEKYKDLFTDERKGPIQKYNKISFEKSKRRRKLTKVSKDNGD 298

[Close]

BLAST of Sed0025049 vs. NCBI nr
Match: XP_038887984.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 442.2 bits (1136), Expect = 3.5e-120
Identity = 228/288 (79.17%), Postives = 252/288 (87.50%), Query Frame = 0


Query: 1   MFVRRFYRA---AAPLLRNLTVGQTMEHGVNSLQVGNSFYSTMMQPQMCKQLADYNMKNK 60
           M VRRF+RA   A PLLR+LTVGQ ME GV+ LQVG+  Y TM+Q QM KQLA  ++KNK
Sbjct: 1   MLVRRFHRATAWATPLLRDLTVGQIMELGVSRLQVGSFCYCTMIQDQMSKQLAVKDIKNK 60

Query: 61  DVNNSKALCQTSERSIGDIRKHQIGENVPRADKINFLVNTLLDLRDSKEAVYGALDAWVA 120
           D NNSKAL QTSE++IGD+RKHQIG+NVPR DKINFLVNTLLDLRDSKEAVYGALDAWVA
Sbjct: 61  DFNNSKALGQTSEQNIGDVRKHQIGKNVPRKDKINFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSKGQGNTLGVYGQLIRALDMDHRAEE 180
           WEQDFPI SLK  L  LEKEQQWHRVVQVIKWMLSKGQG T+ VYGQLIRALDMDHRAEE
Sbjct: 121 WEQDFPIGSLKHVLTVLEKEQQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPEDLVKLFKDLEAFGRKPPEKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQ+CRSMI+IYYRNK  EDLVKLFKDLEAFGRKPPEKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMIAIYYRNKMLEDLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADSYEMLGLLEEKERILVKYEDLFTVDKK-EAKKYKRISIAKSKRRKK 285
           AD+ E+LGLLEEKER+L+KY+ LFT +K+   KKYKR+S  KSK ++K
Sbjct: 241 ADACEILGLLEEKERVLMKYKYLFTDEKEGSIKKYKRVSFEKSKGKRK 288

[Close]

BLAST of Sed0025049 vs. NCBI nr
Match: XP_022967610.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 440.7 bits (1132), Expect = 1.0e-119
Identity = 226/276 (81.88%), Postives = 242/276 (87.68%), Query Frame = 0


Query: 1   MFVRRFYRA---AAPLLRNLTVGQTMEHGVNSLQVGNSFYSTMMQPQMCKQLADYNMKNK 60
           M +RRF+RA   A PLLR+ TVGQ ME GVN LQ+GNS Y TM+Q QM K+ AD +M +K
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQVMELGVNKLQIGNSCYCTMLQNQMPKRFADKDMTDK 60

Query: 61  DVNNSKALCQTSERSIGDIRKHQIGENVPRADKINFLVNTLLDLRDSKEAVYGALDAWVA 120
           DVNNSK L QTSER+IGDIRKHQIGENV R DKINFLVNTL+DLRDSKEAVYGALDAWVA
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKINFLVNTLMDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSKGQGNTLGVYGQLIRALDMDHRAEE 180
           WEQDFPIASLK ALA LEKE QWHRVVQVIKWMLSKGQG T+ VYGQLIRALDMDHRAEE
Sbjct: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPEDLVKLFKDLEAFGRKPPEKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQ+CRSMISIYYRNK  EDLVKLFKDLEAFGRKPPEKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADSYEMLGLLEEKERILVKYEDLFTVDKK-EAKKYK 273
           AD+ EMLGL+EEKER+LVKY  LFT +KK   KKYK
Sbjct: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYK 276

[Close]

BLAST of Sed0025049 vs. ExPASy Swiss-Prot
Match: Q2V3H0 (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 2.9e-32
Identity = 72/164 (43.90%), Postives = 102/164 (62.20%), Query Frame = 0


Query: 94  LVNTLLDLRDSKEAVYGALDAWVAWEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSK 153
           LV  L  L + KEAVYGAL+ WVAWE +FPI +  +AL  L K  QWHRV+Q+ KWMLSK
Sbjct: 101 LVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSK 160

Query: 154 GQGNTLGVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPED 213
           GQG T+G Y  L+ A DMD RA+EA   W M + +   S+P ++   MI++Y  +   + 
Sbjct: 161 GQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDK 220

Query: 214 LVKLFKDLEAFGRKPPEKSIVQRVADSYEMLGLLEEKERILVKY 258
           ++++F D+E     P E S  +RVA ++  L   E ++ IL +Y
Sbjct: 221 VIEVFADMEELKVSPDEDS-ARRVARAFRELNQEENRKLILRRY 263

[Close]

BLAST of Sed0025049 vs. ExPASy Swiss-Prot
Match: Q8LG95 (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.8e-30
Identity = 65/164 (39.63%), Postives = 100/164 (60.98%), Query Frame = 0


Query: 94  LVNTLLDLRDSKEAVYGALDAWVAWEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSK 153
           ++  +  L + KE VYGALD+++AWE +FP+  +K+AL  LE E++W +++QV KWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 154 GQGNTLGVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPED 213
           GQG T+G Y  L+ AL  D+R +EA + W       L   P +    MISIYY+    + 
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 214 LVKLFKDLEAFGRKPPEKSIVQRVADSYEMLGLLEEKERILVKY 258
           L ++F D+E  G K P  +IV  V   +  L + ++ E+++ KY
Sbjct: 181 LFEVFADMEELGVK-PNVAIVSMVGKVFVKLEMKDKYEKLMKKY 223

[Close]

BLAST of Sed0025049 vs. ExPASy TrEMBL
Match: A0A1S3C174 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495459 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 2.0e-121
Identity = 228/287 (79.44%), Postives = 253/287 (88.15%), Query Frame = 0


Query: 1   MFVRRFYRAAA---PLLRNLTVGQTMEHGVNSLQVGNSFYSTMMQPQMCKQLADYNMKNK 60
           M +RRFYRAAA   PLLR+ TVG+TME GV+ LQVG S+Y TM+Q QM KQLAD + KNK
Sbjct: 1   MLIRRFYRAAAWATPLLRHPTVGKTMELGVSRLQVGCSWYCTMIQDQMYKQLADKDRKNK 60

Query: 61  DVNNSKALCQTSERSIGDIRKHQIGENVPRADKINFLVNTLLDLRDSKEAVYGALDAWVA 120
           DV+NSKAL   SE++IGDIRKH+IGENV R DKI+FLVNTLLDLRDSKEAVYGALDAWVA
Sbjct: 61  DVDNSKALGHISEQNIGDIRKHKIGENVSRKDKISFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSKGQGNTLGVYGQLIRALDMDHRAEE 180
           WEQDFPIASLK  LAALEKEQQWHR+VQVIKWMLSKGQG T+ VYGQLIRALDMDHRAEE
Sbjct: 121 WEQDFPIASLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPEDLVKLFKDLEAFGRKPPEKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQ+CRSMI+IYYRNK  EDLVKLFKDLEAFGRKPP+KSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMIAIYYRNKMLEDLVKLFKDLEAFGRKPPDKSIVQRV 240

Query: 241 ADSYEMLGLLEEKERILVKYEDLFTVDKKEAKKYKRISIAKSKRRKK 285
           AD+ EMLGLLEEKER+LVKY+ LF   ++  KKYKR+S  K KR++K
Sbjct: 241 ADACEMLGLLEEKERVLVKYKYLFDEKQESMKKYKRVSFEKPKRKRK 287

[Close]

BLAST of Sed0025049 vs. ExPASy TrEMBL
Match: A0A6J1DNN5 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X3 OS=Momordica charantia OX=3673 GN=LOC111021690 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 3.4e-121
Identity = 229/298 (76.85%), Postives = 256/298 (85.91%), Query Frame = 0


Query: 1   MFVRRFYRA---AAPLLRNLTVGQTMEHGVNSLQVGNSFYSTMMQPQMCKQLADYNMKNK 60
           M VRRF+RA     PLLR+LT GQ M+ GV+ LQVGNS Y TM+Q QMC+QLAD +MKNK
Sbjct: 1   MLVRRFHRATTWVTPLLRDLTAGQIMDLGVSRLQVGNSCYCTMVQAQMCQQLADRDMKNK 60

Query: 61  DVNNSKALCQTSERSIGDIRKHQIGENVPRADKINFLVNTLLDLRDSKEAVYGALDAWVA 120
           DVNNSKALCQ SE++ GD+RKHQIGENV R DKINFLV TL+DLR SKEAVYGALDAWVA
Sbjct: 61  DVNNSKALCQRSEQNDGDMRKHQIGENVSRKDKINFLVATLVDLRGSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSKGQGNTLGVYGQLIRALDMDHRAEE 180
           WEQ+FPIASLKQ LA LEKEQQWHRVVQVIKWMLSKGQG T+ VYGQLIRALDMDHRAEE
Sbjct: 121 WEQNFPIASLKQVLAVLEKEQQWHRVVQVIKWMLSKGQGTTMRVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPEDLVKLFKDLEAFGRKPPEKSIVQRV 240
           +HKFWVMKIG+DLHSVPWQ+CRSMISIYYRNK  ++LVKLFKDLEAFGRKPPEKSIVQRV
Sbjct: 181 SHKFWVMKIGADLHSVPWQLCRSMISIYYRNKMLDNLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADSYEMLGLLEEKERILVKYEDLFTVDKK-EAKKYKRISIAKSKRRKKQMQRVPKTGD 295
           AD+YEMLGL EEKER+L KY+DLFT ++K   +KY +IS  KSKRR+K  +     GD
Sbjct: 241 ADAYEMLGLHEEKERVLEKYKDLFTDERKGPIQKYNKISFEKSKRRRKLTKVSKDNGD 298

[Close]

BLAST of Sed0025049 vs. ExPASy TrEMBL
Match: A0A6J1DM10 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021690 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 3.4e-121
Identity = 229/298 (76.85%), Postives = 256/298 (85.91%), Query Frame = 0


Query: 1   MFVRRFYRA---AAPLLRNLTVGQTMEHGVNSLQVGNSFYSTMMQPQMCKQLADYNMKNK 60
           M VRRF+RA     PLLR+LT GQ M+ GV+ LQVGNS Y TM+Q QMC+QLAD +MKNK
Sbjct: 25  MLVRRFHRATTWVTPLLRDLTAGQIMDLGVSRLQVGNSCYCTMVQAQMCQQLADRDMKNK 84

Query: 61  DVNNSKALCQTSERSIGDIRKHQIGENVPRADKINFLVNTLLDLRDSKEAVYGALDAWVA 120
           DVNNSKALCQ SE++ GD+RKHQIGENV R DKINFLV TL+DLR SKEAVYGALDAWVA
Sbjct: 85  DVNNSKALCQRSEQNDGDMRKHQIGENVSRKDKINFLVATLVDLRGSKEAVYGALDAWVA 144

Query: 121 WEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSKGQGNTLGVYGQLIRALDMDHRAEE 180
           WEQ+FPIASLKQ LA LEKEQQWHRVVQVIKWMLSKGQG T+ VYGQLIRALDMDHRAEE
Sbjct: 145 WEQNFPIASLKQVLAVLEKEQQWHRVVQVIKWMLSKGQGTTMRVYGQLIRALDMDHRAEE 204

Query: 181 AHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPEDLVKLFKDLEAFGRKPPEKSIVQRV 240
           +HKFWVMKIG+DLHSVPWQ+CRSMISIYYRNK  ++LVKLFKDLEAFGRKPPEKSIVQRV
Sbjct: 205 SHKFWVMKIGADLHSVPWQLCRSMISIYYRNKMLDNLVKLFKDLEAFGRKPPEKSIVQRV 264

Query: 241 ADSYEMLGLLEEKERILVKYEDLFTVDKK-EAKKYKRISIAKSKRRKKQMQRVPKTGD 295
           AD+YEMLGL EEKER+L KY+DLFT ++K   +KY +IS  KSKRR+K  +     GD
Sbjct: 265 ADAYEMLGLHEEKERVLEKYKDLFTDERKGPIQKYNKISFEKSKRRRKLTKVSKDNGD 322

[Close]

BLAST of Sed0025049 vs. ExPASy TrEMBL
Match: A0A6J1HUZ4 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467059 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 5.0e-120
Identity = 226/276 (81.88%), Postives = 242/276 (87.68%), Query Frame = 0


Query: 1   MFVRRFYRA---AAPLLRNLTVGQTMEHGVNSLQVGNSFYSTMMQPQMCKQLADYNMKNK 60
           M +RRF+RA   A PLLR+ TVGQ ME GVN LQ+GNS Y TM+Q QM K+ AD +M +K
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQVMELGVNKLQIGNSCYCTMLQNQMPKRFADKDMTDK 60

Query: 61  DVNNSKALCQTSERSIGDIRKHQIGENVPRADKINFLVNTLLDLRDSKEAVYGALDAWVA 120
           DVNNSK L QTSER+IGDIRKHQIGENV R DKINFLVNTL+DLRDSKEAVYGALDAWVA
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKINFLVNTLMDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSKGQGNTLGVYGQLIRALDMDHRAEE 180
           WEQDFPIASLK ALA LEKE QWHRVVQVIKWMLSKGQG T+ VYGQLIRALDMDHRAEE
Sbjct: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPEDLVKLFKDLEAFGRKPPEKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQ+CRSMISIYYRNK  EDLVKLFKDLEAFGRKPPEKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADSYEMLGLLEEKERILVKYEDLFTVDKK-EAKKYK 273
           AD+ EMLGL+EEKER+LVKY  LFT +KK   KKYK
Sbjct: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYK 276

[Close]

BLAST of Sed0025049 vs. ExPASy TrEMBL
Match: A0A6J1HGC4 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463832 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.6e-118
Identity = 223/276 (80.80%), Postives = 241/276 (87.32%), Query Frame = 0


Query: 1   MFVRRFYRA---AAPLLRNLTVGQTMEHGVNSLQVGNSFYSTMMQPQMCKQLADYNMKNK 60
           M +RRF+RA   A PLLR+ TVGQ ME GVN LQ+GNS Y TM+Q QM K+  D +M +K
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60

Query: 61  DVNNSKALCQTSERSIGDIRKHQIGENVPRADKINFLVNTLLDLRDSKEAVYGALDAWVA 120
           DVNNSK L QTSER+IGDIRKHQIGENV R DKI+FLVNTL+DLRDSKEAVYGALDAWVA
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSKGQGNTLGVYGQLIRALDMDHRAEE 180
           WEQDFPIASLK ALA LEKE QWHRVVQVIKWMLSKGQG T+ VYGQLIRALDMDHRAEE
Sbjct: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPEDLVKLFKDLEAFGRKPPEKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQ+CRSMISIYYRNK  EDLVKLFK+LEAFGRKPPEKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV 240

Query: 241 ADSYEMLGLLEEKERILVKYEDLFTVDKK-EAKKYK 273
           AD+ EMLGL+EEKER+LVKY  LFT +KK   KKYK
Sbjct: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYK 276

[Close]

BLAST of Sed0025049 vs. TAIR 10
Match: AT1G04590.1 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 288.9 bits (738), Expect = 4.7e-78
Identity = 139/215 (64.65%), Postives = 173/215 (80.47%), Query Frame = 0


Query: 77  RKHQIGENVPRADKINFLVNTLLDLRDSKEAVYGALDAWVAWEQDFPIASLKQALAALEK 136
           RKHQIGEN+P+ DKI FLVNTLLD+ D+KEAVYGALDAWVAWE++FPIASLK  +A+LEK
Sbjct: 132 RKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEK 191

Query: 137 EQQWHRVVQVIKWMLSKGQGNTLGVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQ 196
           E QWHR+VQVIKW+LSKGQGNT+G YGQLIRALDMD RAEEAH  W  K+G+DLHSVPWQ
Sbjct: 192 EHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQ 251

Query: 197 MCRSMISIYYRNKRPEDLVKLFKDLEAFGRKPPEKSIVQRVADSYEMLGLLEEKERILVK 256
           +C  M+ IY+RN   ++LVKLFKDLE++ RKPP+K IVQ VAD+YE+LG+L+EKER++ K
Sbjct: 252 LCLQMMRIYFRNNMLQELVKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVVTK 311

Query: 257 YEDLFTVDKKEAKKYKRISIAKSKRRKKQMQRVPK 292
           Y  L      + K  +      S+++KK   R+P+
Sbjct: 312 YSHLLLGTPSDDKPSR-----SSRKKKKPELRIPE 341

[Close]

BLAST of Sed0025049 vs. TAIR 10
Match: AT1G04590.2 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 283.5 bits (724), Expect = 2.0e-76
Identity = 139/218 (63.76%), Postives = 173/218 (79.36%), Query Frame = 0


Query: 77  RKHQIGENVPRADKINFLVNTLLDLRDSKEAVYGALDAWVAWEQDFPIASLKQALAALEK 136
           RKHQIGEN+P+ DKI FLVNTLLD+ D+KEAVYGALDAWVAWE++FPIASLK  +A+LEK
Sbjct: 132 RKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEK 191

Query: 137 EQQWHRVVQVIKWMLSKGQGNTLGVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQ 196
           E QWHR+VQVIKW+LSKGQGNT+G YGQLIRALDMD RAEEAH  W  K+G+DLHSVPWQ
Sbjct: 192 EHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQ 251

Query: 197 MCRSMISIYYRNKRPEDLV---KLFKDLEAFGRKPPEKSIVQRVADSYEMLGLLEEKERI 256
           +C  M+ IY+RN   ++LV   KLFKDLE++ RKPP+K IVQ VAD+YE+LG+L+EKER+
Sbjct: 252 LCLQMMRIYFRNNMLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERV 311

Query: 257 LVKYEDLFTVDKKEAKKYKRISIAKSKRRKKQMQRVPK 292
           + KY  L      + K  +      S+++KK   R+P+
Sbjct: 312 VTKYSHLLLGTPSDDKPSR-----SSRKKKKPELRIPE 344

[Close]

BLAST of Sed0025049 vs. TAIR 10
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-33
Identity = 72/164 (43.90%), Postives = 102/164 (62.20%), Query Frame = 0


Query: 94  LVNTLLDLRDSKEAVYGALDAWVAWEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSK 153
           LV  L  L + KEAVYGAL+ WVAWE +FPI +  +AL  L K  QWHRV+Q+ KWMLSK
Sbjct: 101 LVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSK 160

Query: 154 GQGNTLGVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPED 213
           GQG T+G Y  L+ A DMD RA+EA   W M + +   S+P ++   MI++Y  +   + 
Sbjct: 161 GQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDK 220

Query: 214 LVKLFKDLEAFGRKPPEKSIVQRVADSYEMLGLLEEKERILVKY 258
           ++++F D+E     P E S  +RVA ++  L   E ++ IL +Y
Sbjct: 221 VIEVFADMEELKVSPDEDS-ARRVARAFRELNQEENRKLILRRY 263

[Close]

BLAST of Sed0025049 vs. TAIR 10
Match: AT4G18975.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-33
Identity = 72/164 (43.90%), Postives = 102/164 (62.20%), Query Frame = 0


Query: 94  LVNTLLDLRDSKEAVYGALDAWVAWEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSK 153
           LV  L  L + KEAVYGAL+ WVAWE +FPI +  +AL  L K  QWHRV+Q+ KWMLSK
Sbjct: 74  LVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSK 133

Query: 154 GQGNTLGVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPED 213
           GQG T+G Y  L+ A DMD RA+EA   W M + +   S+P ++   MI++Y  +   + 
Sbjct: 134 GQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDK 193

Query: 214 LVKLFKDLEAFGRKPPEKSIVQRVADSYEMLGLLEEKERILVKY 258
           ++++F D+E     P E S  +RVA ++  L   E ++ IL +Y
Sbjct: 194 VIEVFADMEELKVSPDEDS-ARRVARAFRELNQEENRKLILRRY 236

[Close]

BLAST of Sed0025049 vs. TAIR 10
Match: AT4G18975.3 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-33
Identity = 72/164 (43.90%), Postives = 102/164 (62.20%), Query Frame = 0


Query: 94  LVNTLLDLRDSKEAVYGALDAWVAWEQDFPIASLKQALAALEKEQQWHRVVQVIKWMLSK 153
           LV  L  L + KEAVYGAL+ WVAWE +FPI +  +AL  L K  QWHRV+Q+ KWMLSK
Sbjct: 101 LVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSK 160

Query: 154 GQGNTLGVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQMCRSMISIYYRNKRPED 213
           GQG T+G Y  L+ A DMD RA+EA   W M + +   S+P ++   MI++Y  +   + 
Sbjct: 161 GQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDK 220

Query: 214 LVKLFKDLEAFGRKPPEKSIVQRVADSYEMLGLLEEKERILVKY 258
           ++++F D+E     P E S  +RVA ++  L   E ++ IL +Y
Sbjct: 221 VIEVFADMEELKVSPDEDS-ARRVARAFRELNQEENRKLILRRY 263

The following BLAST results are available for this feature:

BLAST of Sed0025049 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455250.1	4.2e-121	79.44	PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ...	[more]
XP_022154414.1	7.1e-121	76.85	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
XP_022154416.1	7.1e-121	76.85	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X3 ...	[more]
XP_038887984.1	3.5e-120	79.17	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
XP_022967610.1	1.0e-119	81.88	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]

BLAST of Sed0025049 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2V3H0	2.9e-32	43.90	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]
Q8LG95	7.8e-30	39.63	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX...	[more]

BLAST of Sed0025049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C174	2.0e-121	79.44	pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Cucumis ...	[more]
A0A6J1DNN5	3.4e-121	76.85	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X3 ...	[more]
A0A6J1DM10	3.4e-121	76.85	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
A0A6J1HUZ4	5.0e-120	81.88	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
A0A6J1HGC4	1.6e-118	80.80	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]

BLAST of Sed0025049 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04590.1	4.7e-78	64.65	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) super...	[more]
AT1G04590.2	2.0e-76	63.76	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) super...	[more]
AT4G18975.1	2.0e-33	43.90	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.2	2.0e-33	43.90	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.3	2.0e-33	43.90	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 90..260 e-value: 1.3E-8 score: 36.4
None	No IPR available	PANTHER	PTHR47603	PPR CONTAINING-LIKE PROTEIN	coord: 15..285
None	No IPR available	PANTHER	PTHR47603:SF1	PPR CONTAINING-LIKE PROTEIN	coord: 15..285

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025049.1	Sed0025049.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding