Sed0025010 (gene) Chayote v1

Overview


Name	Sed0025010
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CCHC-type domain-containing protein
Location	LG09: 7614293 .. 7614655 (+)
RNA-Seq Expression	Sed0025010
Synteny	Sed0025010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGTAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTGATACAATCTGGATTACACAAGGCTTTGAAAGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAATCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGTAAAGGTTCAAAGAAGTCCAGCATGAGTGATGACGAATGGGAGGAAATGGATTTGAAGGCTGCAAGTGCCATCATGTTAAATTTGGCTAAAAATGTTCTTGCTAATATGCATGGAATATCAACAGCCAAAGAGCTTTGGGAGAAGCTTGAAGCGATGTATTAG

mRNA sequence

ATGACAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGTAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTGATACAATCTGGATTACACAAGGCTTTGAAAGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAATCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGTAAAGGTTCAAAGAAGTCCAGCATGAGTGATGACGAATGGGAGGAAATGGATTTGAAGGCTGCAAGTGCCATCATGTTAAATTTGGCTAAAAATGTTCTTGCTAATATGCATGGAATATCAACAGCCAAAGAGCTTTGGGAGAAGCTTGAAGCGATGTATTAG

Coding sequence (CDS)

ATGACAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGTAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTGATACAATCTGGATTACACAAGGCTTTGAAAGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAATCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGTAAAGGTTCAAAGAAGTCCAGCATGAGTGATGACGAATGGGAGGAAATGGATTTGAAGGCTGCAAGTGCCATCATGTTAAATTTGGCTAAAAATGTTCTTGCTAATATGCATGGAATATCAACAGCCAAAGAGCTTTGGGAGAAGCTTGAAGCGATGTATTAG

Protein sequence

MTSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGISTAKELWEKLEAMY

Homology

[Close]

BLAST of Sed0025010 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 176.0 bits (445), Expect = 1.9e-40
Identity = 94/120 (78.33%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 1   MTSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGST 60
           M+ FMS VK DVEKFDG +NFGLWQVQVKDVLIQS LHKALKGRPS G SEK   DGG  
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGISTAKELWEKLEAMY 120
           ESSGGSS+GSKKSSMS ++WEEMDL+AASAI  +LAKN+LAN+H ISTAKELWEKLEA+Y
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414

[Close]

BLAST of Sed0025010 vs. NCBI nr
Match: KAF7802225.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 148.3 bits (373), Expect = 4.3e-32
Identity = 79/120 (65.83%), Postives = 92/120 (76.67%), Query Frame = 0


Query: 1   MTSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGST 60
           M+ F S+VKFDVEKFDGR+NFGLWQVQVKDVLIQSGLHKAL+G+ S  DSEKS       
Sbjct: 1   MSKFSSAVKFDVEKFDGRINFGLWQVQVKDVLIQSGLHKALEGKVSSKDSEKS------- 60

Query: 61  ESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGISTAKELWEKLEAMY 120
                      +SSMSD +WEE+DL+AAS I L+LAKNVLAN+ GISTAKELW+KLE +Y
Sbjct: 61  -----------ESSMSDGDWEELDLRAASTIRLSLAKNVLANVQGISTAKELWKKLEGLY 102

[Close]

BLAST of Sed0025010 vs. NCBI nr
Match: KAF7810708.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-29
Identity = 76/120 (63.33%), Postives = 89/120 (74.17%), Query Frame = 0


Query: 1   MTSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGST 60
           M+ F S++KFDVEKFDGR+NFG WQVQVKDVLIQSGL KAL+G+ S  DSEKS       
Sbjct: 49  MSKFSSAMKFDVEKFDGRINFGWWQVQVKDVLIQSGLQKALEGKVSSKDSEKS------- 108

Query: 61  ESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGISTAKELWEKLEAMY 120
                      +SSMSD +WEE+DL+AAS I L LAKNVLAN+ GISTAKELW+KLE +Y
Sbjct: 109 -----------ESSMSDGDWEELDLRAASTIRLCLAKNVLANVQGISTAKELWKKLEGLY 150

[Close]

BLAST of Sed0025010 vs. NCBI nr
Match: KAF3622233.1 (hypothetical protein FXO38_31400 [Capsicum annuum] >KAF3630407.1 hypothetical protein FXO37_28487 [Capsicum annuum])

HSP 1 Score: 139.8 bits (351), Expect = 1.5e-29
Identity = 76/116 (65.52%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 5   MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSG 64
           +   KF++EKFDGR+NFG+WQVQVKDVLIQSGLHKALK RP+   SEK   D   +E   
Sbjct: 69  LEGTKFEIEKFDGRINFGVWQVQVKDVLIQSGLHKALKERPT---SEKGNKDSEKSE--- 128

Query: 65  GSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGISTAKELWEKLEAMY 121
            SSK S+KS +SD+EWEE+D+KAAS I L LAKNVLAN+ G+ST KELWEKLE +Y
Sbjct: 129 -SSKDSEKSKISDEEWEELDMKAASQIRLYLAKNVLANVIGLSTTKELWEKLEELY 177

[Close]

BLAST of Sed0025010 vs. NCBI nr
Match: KAF5463231.1 (hypothetical protein F2P56_019161 [Juglans regia])

HSP 1 Score: 137.9 bits (346), Expect = 5.8e-29
Identity = 73/116 (62.93%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 6   SSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGG-DSEKSIGDGGSTESSG 65
           +S++++VEKFDGR+NFGLWQVQVKDVLIQSGLHKALKGRP+    S+ S+ D        
Sbjct: 8   NSIRYEVEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRPTPEVSSDTSVTD-------- 67

Query: 66  GSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGISTAKELWEKLEAMY 121
              +   +S MSD++WE++DL+AASAI L LAKNVLAN+HGISTAK+LWEKLE +Y
Sbjct: 68  ---QTKSRSVMSDEDWEDLDLRAASAIRLCLAKNVLANIHGISTAKKLWEKLEELY 112

[Close]

BLAST of Sed0025010 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-11
Identity = 39/116 (33.62%), Postives = 62/116 (53.45%), Query Frame = 0


Query: 5   MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSG 64
           MS VK++V KF+G   F  WQ +++D+LIQ GLHK L                       
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVL----------------------- 60

Query: 65  GSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGISTAKELWEKLEAMY 121
                 K  +M  ++W ++D +AASAI L+L+ +V+ N+    TA+ +W +LE++Y
Sbjct: 61  -DVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLY 92

[Close]

BLAST of Sed0025010 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 9.3e-41
Identity = 94/120 (78.33%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 1   MTSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGST 60
           M+ FMS VK DVEKFDG +NFGLWQVQVKDVLIQS LHKALKGRPS G SEK   DGG  
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGISTAKELWEKLEAMY 120
           ESSGGSS+GSKKSSMS ++WEEMDL+AASAI  +LAKN+LAN+H ISTAKELWEKLEA+Y
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414

[Close]

BLAST of Sed0025010 vs. ExPASy TrEMBL
Match: A0A2G3AMB5 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_03257 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.0e-27
Identity = 77/119 (64.71%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 2   TSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTE 61
           T      KF++EKFDGR+NF LWQVQVKDVLIQSGL+KALK RP+   SEK  GD  S +
Sbjct: 204 TPVKMGTKFEIEKFDGRINFDLWQVQVKDVLIQSGLYKALKERPT---SEK--GDKDSEK 263

Query: 62  SSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGISTAKELWEKLEAMY 121
           S   SSK S+K  +SD+EWEE+D+KAAS I L LAKNVLAN+ G+ST KELWEKLE +Y
Sbjct: 264 SQ--SSKDSEKFRISDEEWEELDMKAASPIRLFLAKNVLANVIGLSTTKELWEKLEELY 315

[Close]

BLAST of Sed0025010 vs. ExPASy TrEMBL
Match: A0A2G2YJH4 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_25006 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.6e-27
Identity = 71/117 (60.68%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 4   FMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESS 63
           +M   KF++EKFDGR+NFGLWQVQVKDVLIQSGLHKALK RP+ G  +K   D    E  
Sbjct: 245 YMMGTKFEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKERPTSGKGDK---DSKKFE-- 304

Query: 64  GGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGISTAKELWEKLEAMY 121
             SS+ S+KS +SD+EWEE+D+K  S I L LAK VL N+ G+ST K+LWEKLE +Y
Sbjct: 305 --SSEDSEKSRISDEEWEELDMKVESQIRLCLAKYVLTNVIGLSTTKKLWEKLEELY 354

[Close]

BLAST of Sed0025010 vs. ExPASy TrEMBL
Match: A0A6A3CWI3 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001713pilonHSYRG00162 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 7   SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGS 66
           S +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S+ +G   +    S
Sbjct: 2   SFRFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPA------SLSEGKEPDKPSDS 61

Query: 67  SKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGISTAKELWEKLEAMY 121
           S    KS MS++EWEE+D++AAS I L LAKNVLAN+   S+ KELWEKLE MY
Sbjct: 62  SGDKGKSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMY 109

[Close]

BLAST of Sed0025010 vs. ExPASy TrEMBL
Match: A0A6A3BK59 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110050pilonHSYRG00143 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 7   SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGS 66
           S +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S+ +G   +    S
Sbjct: 2   SFRFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPA------SLSEGKEPDKPSDS 61

Query: 67  SKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGISTAKELWEKLEAMY 121
           S    KS MS++EWEE+D++AAS I L LAKNVLAN+   S+ KELWEKLE MY
Sbjct: 62  SGDKGKSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMY 109

The following BLAST results are available for this feature:

BLAST of Sed0025010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	1.9e-40	78.33	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
KAF7802225.1	4.3e-32	65.83	cytochrome p450 [Senna tora]	[more]
KAF7810708.1	1.2e-29	63.33	cytochrome p450 [Senna tora]	[more]
KAF3622233.1	1.5e-29	65.52	hypothetical protein FXO38_31400 [Capsicum annuum] >KAF3630407.1 hypothetical pr...	[more]
KAF5463231.1	5.8e-29	62.93	hypothetical protein F2P56_019161 [Juglans regia]	[more]

BLAST of Sed0025010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.3e-11	33.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Sed0025010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG82	9.3e-41	78.33	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A2G3AMB5	2.0e-27	64.71	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_03257 PE=4 SV=1	[more]
A0A2G2YJH4	7.6e-27	60.68	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_25006 PE=3 SV=1	[more]
A0A6A3CWI3	1.3e-26	60.53	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A6A3BK59	1.3e-26	60.53	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]

BLAST of Sed0025010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..71
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 2..120
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 2..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025010.1	Sed0025010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding