Sed0024996 (gene) Chayote v1

Overview


Name	Sed0024996
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Mediator of RNA polymerase II transcription subunit 32
Location	LG01: 2376367 .. 2378274 (+)
RNA-Seq Expression	Sed0024996
Synteny	Sed0024996

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAATTGTTCATTTTCCCGAAAGCTTGATTAAAAAAAGAAATCGGTAAACAATTTTCTTCTAGCACACCATAAGCCTCGCGCTCGCTTCCCTGGCCGTCGTTCTTCGTCCGCCGCCGTACTCGCGAGTTACAGCCGCACCAGTGTCGCCGTCCCCCGCAGGTCGTTGTCGGTCTCTCGACGGTGCAGCCTCGTTCCGCCCGTGTTATGCGCGAGGGTCCTGTTCATTCTCTGACCAGATCTGCCCGCCAATCTCGAGCAGCGCCGCCGTGAATATCCCTTTTTCGTCCAGCTGTGTTTGGTTCCAGATTTGGGGTAAGTTTCATCTTGATTTTTAGTAATTTTAGTTAGGTTTTTTTTTAATCGATTGGTTTGAGGGTTTAATAGTTTCTTTCCGTGGATTTTTTTTTGTTGGAAGTGTACCGACTCCGTTTCGGTGTCGAATTCTCAATTTTGGCTCAATCAAAGTTTCTTTCCAGTAGGTTTCCATATCTTTGGAGTGAGATTTTTTTAAGTTTAAGGAATCATTACAACCTTGAGGTTCAATTATGGATTTGTAAAGGTTGTTGCTAATTTGATTTCCCCCTTTGATTAGGCCCTAGAATCAAGCTATAAGGATCTAGGTCAATTCATTATTGAGAAATTTGGTTGTTGCTATAAGTTGGTGTTTAGTTAATATCATTAAGGTTGCTAAGTTCTTGTTGAAGTATAAATTAAATTTTAGGATTTGCCTTTGTGGGTTCTCTGAGATTGTGTTCTGAATTGCTTTACGAAATCTTTGCATATGCATTTCTGTAAAAGACAATGGGAATCGAGCATATGAGTTAGCAATGGATTTTAAGTCTATTAGGTATGATAATTTGTAGGTTTCTGTTAGTTGATATAATTTAATTTACCCTAACTCACCAGCTTAAGCTTTTGGGTTGATTGGTGGTTTGACATAATTCAACATCCTATCACCCCAACTCACCAGTTTAAACTTTTGGGTTGGTCAGTGGTTTAACATAATTCAACAGTTTCTTTGATGCATTTGTTAAATAGTAGGTTAGGCACCAAGAAGAGAAAACCAAAAATAGTTATTACTGGACGTGTATGTTTTTTGTAACTTGACTCTTAAAGCTTGATTCATGTTCCATAGGCCTTATTTTGTAACTTTTCATTACCAAAAAAACTGAAATGGTTACCAAACAAGGCCTTAGGAACATAATGCAATTGGTGTATGTTTCCTTTCTTTTTCAGTTTAGGATTTCTCTAGAGCCTATATTTACTCTTTTTGTTGTCCTATTTATAGGTATTCTGATATGGACAGCCTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCTGGTGCAGCCAACGTCCTCGAAGCAAATGAAACGTCTGGGGCTCAGAAGACAGCGGCAACAGATGCTGCTCTTGAGAATTTTAAACAAAAATGGGAGCTGTTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTAAAGCAAAGGATAGGATCAGAGTGTCTGGTCGATGAGGCCACTGGTTCGCTGGCCGGTAAGTCTGGACAGGCTGCCACTGCCGGCCTTCCGCCAATTAGTGCCGTTCGGCTGGAACAAATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGTTGCAGCATGGCTCTGGAGCTGCTTCTTCTGCTTCAGCACACTCTCATCCTTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATAGGTACCCATATTATATAGCTTTACCATAATAATATTTTGTGTTTTGCATGGAACCTCTCTTGGGGGGGTGGGGAATTAACTGTGAAAGATATATTATCTTGAACTTTGACTGAATGTGAAAAAATGAAACCATTACTCCTAATCTCAGTTAACTAATATTTACTTTCA

mRNA sequence

TTAAATTGTTCATTTTCCCGAAAGCTTGATTAAAAAAAGAAATCGGTAAACAATTTTCTTCTAGCACACCATAAGCCTCGCGCTCGCTTCCCTGGCCGTCGTTCTTCGTCCGCCGCCGTACTCGCGAGTTACAGCCGCACCAGTGTCGCCGTCCCCCGCAGGTCGTTGTCGGTCTCTCGACGGTGCAGCCTCGTTCCGCCCGTGTTATGCGCGAGGGTCCTGTTCATTCTCTGACCAGATCTGCCCGCCAATCTCGAGCAGCGCCGCCGTGAATATCCCTTTTTCGTCCAGCTGTGTTTGGTTCCAGATTTGGGGTATTCTGATATGGACAGCCTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCTGGTGCAGCCAACGTCCTCGAAGCAAATGAAACGTCTGGGGCTCAGAAGACAGCGGCAACAGATGCTGCTCTTGAGAATTTTAAACAAAAATGGGAGCTGTTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTAAAGCAAAGGATAGGATCAGAGTGTCTGGTCGATGAGGCCACTGGTTCGCTGGCCGGTAAGTCTGGACAGGCTGCCACTGCCGGCCTTCCGCCAATTAGTGCCGTTCGGCTGGAACAAATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGTTGCAGCATGGCTCTGGAGCTGCTTCTTCTGCTTCAGCACACTCTCATCCTTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATAGGTACCCATATTATATAGCTTTACCATAATAATATTTTGTGTTTTGCATGGAACCTCTCTTGGGGGGGTGGGGAATTAACTGTGAAAGATATATTATCTTGAACTTTGACTGAATGTGAAAAAATGAAACCATTACTCCTAATCTCAGTTAACTAATATTTACTTTCA

Coding sequence (CDS)

ATGGACAGCCTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCTGGTGCAGCCAACGTCCTCGAAGCAAATGAAACGTCTGGGGCTCAGAAGACAGCGGCAACAGATGCTGCTCTTGAGAATTTTAAACAAAAATGGGAGCTGTTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTAAAGCAAAGGATAGGATCAGAGTGTCTGGTCGATGAGGCCACTGGTTCGCTGGCCGGTAAGTCTGGACAGGCTGCCACTGCCGGCCTTCCGCCAATTAGTGCCGTTCGGCTGGAACAAATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGTTGCAGCATGGCTCTGGAGCTGCTTCTTCTGCTTCAGCACACTCTCATCCTTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATAG

Protein sequence

MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAVRLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ

Homology

[Close]

BLAST of Sed0024996 vs. NCBI nr
Match: XP_038902813.1 (mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida] >XP_038902814.1 mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida])

HSP 1 Score: 268.5 bits (685), Expect = 3.5e-68
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQAAT G+PPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATTGIPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAASSASAHSHPSAPFDARFTEDATQ 147
           GAA+SASAHSH SAPFDARFTEDATQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDATQ 146

[Close]

BLAST of Sed0024996 vs. NCBI nr
Match: KAA0045925.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa])

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-67
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 5   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 64

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQ+ T GLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 65  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 124

Query: 121 GAASSASAHSHPSAPFDARFTEDATQ 147
           GAA+SASAHSH SAPFDARFTEDATQ
Sbjct: 125 GAAASASAHSHQSAPFDARFTEDATQ 150

[Close]

BLAST of Sed0024996 vs. NCBI nr
Match: XP_004148855.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >XP_031736355.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >KGN61780.1 hypothetical protein Csa_006151 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 2.2e-67
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQ+AT  LPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAASSASAHSHPSAPFDARFTEDATQ 147
           GAA+SASAHSH SAPFDARFTEDATQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDATQ 146

[Close]

BLAST of Sed0024996 vs. NCBI nr
Match: XP_008457936.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo])

HSP 1 Score: 265.0 bits (676), Expect = 3.8e-67
Identity = 139/146 (95.21%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQ+ T GLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAASSASAHSHPSAPFDARFTEDATQ 147
           GAA+SASAHSH SAPFDARFTED TQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDTTQ 146

[Close]

BLAST of Sed0024996 vs. NCBI nr
Match: TYK13665.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 3.8e-67
Identity = 139/146 (95.21%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 5   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 64

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQ+ T GLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 65  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 124

Query: 121 GAASSASAHSHPSAPFDARFTEDATQ 147
           GAA+SASAHSH SAPFDARFTED TQ
Sbjct: 125 GAAASASAHSHQSAPFDARFTEDTTQ 150

[Close]

BLAST of Sed0024996 vs. ExPASy Swiss-Prot
Match: Q84VW5 (Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana OX=3702 GN=MED32 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.3e-45
Identity = 104/153 (67.97%), Postives = 119/153 (77.78%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATG---SLAGKSGQAATAG----LPPISAVRLEQMSKAVRWLV 120
           FVESVKQRIGSECLVDEATG   + AG    AA  G    LPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 121 IELQHGSGAASSASAHSHPSAPFDARFTEDATQ 147
           +ELQ GSG A   S HS  S  FD+RF+ED+TQ
Sbjct: 121 LELQRGSGVA-PGSVHS-SSTGFDSRFSEDSTQ 151

[Close]

BLAST of Sed0024996 vs. ExPASy TrEMBL
Match: A0A5A7TWZ7 (Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G004640 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.4e-68
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 5   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 64

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQ+ T GLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 65  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 124

Query: 121 GAASSASAHSHPSAPFDARFTEDATQ 147
           GAA+SASAHSH SAPFDARFTEDATQ
Sbjct: 125 GAAASASAHSHQSAPFDARFTEDATQ 150

[Close]

BLAST of Sed0024996 vs. ExPASy TrEMBL
Match: A0A0A0LIN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQ+AT  LPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAASSASAHSHPSAPFDARFTEDATQ 147
           GAA+SASAHSH SAPFDARFTEDATQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDATQ 146

[Close]

BLAST of Sed0024996 vs. ExPASy TrEMBL
Match: A0A5D3CQ46 (Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001830 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.8e-67
Identity = 139/146 (95.21%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 5   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 64

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQ+ T GLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 65  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 124

Query: 121 GAASSASAHSHPSAPFDARFTEDATQ 147
           GAA+SASAHSH SAPFDARFTED TQ
Sbjct: 125 GAAASASAHSHQSAPFDARFTEDTTQ 150

[Close]

BLAST of Sed0024996 vs. ExPASy TrEMBL
Match: A0A1S3C6T6 (mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 GN=LOC103497499 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.8e-67
Identity = 139/146 (95.21%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQ+ T GLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAASSASAHSHPSAPFDARFTEDATQ 147
           GAA+SASAHSH SAPFDARFTED TQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDTTQ 146

[Close]

BLAST of Sed0024996 vs. ExPASy TrEMBL
Match: A0A6J1JH28 (mediator of RNA polymerase II transcription subunit 32-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484308 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.7e-66
Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFV+GAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAA--TAGLPPISAVRLEQMSKAVRWLVIELQH 120
           FVESVKQRIGSECLVDEATGSLAGKSGQAA  T GLPPISA+RLEQMSKAVRWLVIELQH
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAAATTTGLPPISAIRLEQMSKAVRWLVIELQH 120

Query: 121 GSG-AASSASAHSHPSAPFDARFTEDATQ 147
           GSG AA+SASAHSHPSAPFDARFTEDATQ
Sbjct: 121 GSGAAAASASAHSHPSAPFDARFTEDATQ 149

[Close]

BLAST of Sed0024996 vs. TAIR 10
Match: AT1G11760.1 (MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-46
Identity = 104/153 (67.97%), Postives = 119/153 (77.78%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATG---SLAGKSGQAATAG----LPPISAVRLEQMSKAVRWLV 120
           FVESVKQRIGSECLVDEATG   + AG    AA  G    LPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 121 IELQHGSGAASSASAHSHPSAPFDARFTEDATQ 147
           +ELQ GSG A   S HS  S  FD+RF+ED+TQ
Sbjct: 121 LELQRGSGVA-PGSVHS-SSTGFDSRFSEDSTQ 151

The following BLAST results are available for this feature:

BLAST of Sed0024996 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902813.1	3.5e-68	96.58	mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida] >XP_0...	[more]
KAA0045925.1	1.3e-67	95.89	mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa...	[more]
XP_004148855.1	2.2e-67	95.89	mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >XP_031...	[more]
XP_008457936.1	3.8e-67	95.21	PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo]	[more]
TYK13665.1	3.8e-67	95.21	mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa...	[more]

BLAST of Sed0024996 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84VW5	3.3e-45	67.97	Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana O...	[more]

BLAST of Sed0024996 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWZ7	6.4e-68	95.89	Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. maku...	[more]
A0A0A0LIN7	1.1e-67	95.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1	[more]
A0A5D3CQ46	1.8e-67	95.21	Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. maku...	[more]
A0A1S3C6T6	1.8e-67	95.21	mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1JH28	2.7e-66	94.63	mediator of RNA polymerase II transcription subunit 32-like isoform X2 OS=Cucurb...	[more]

BLAST of Sed0024996 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11760.1	2.3e-46	67.97	MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0;...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..146
None	No IPR available	PANTHER	PTHR35989:SF1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32	coord: 1..146
IPR033244	Mediator of RNA polymerase II transcription subunit 32	PANTHER	PTHR35989	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32	coord: 1..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024996.1	Sed0024996.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009631	cold acclimation
biological_process	GO:0010150	leaf senescence
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048364	root development
cellular_component	GO:0016592	mediator complex