Sed0024984 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAACCAACGAATGAAGAATAGTATTTGGTAATGCTTCAAATAGAAAATCCAATCATTCTCTTCCACCTCAATTTGCTTTCAGTTCATCATAAGAAACATTCTCTTCATCGGAGCAAACGGGACCTTTTGAGTGGTAGGTGAAGAAATCCTTCCGATCCCAAGATCAGATCATTCATCTGAGATTCAATCGAAGAACAAGTTCGAGTAGATGTCCCCGTCGAATCGTTCTTCAAGTGGAGTTTGTGGCTATGGCGGACCGAATTTCATAGAGCATCAAATTTCCAGAATGGATACTCTCGCCGGCATCGCCATTAAGTACGGAGTCGAGGTAACCTTTCATTTTCCATTTTCTGTTATCAATTTTGTGTTCGTTGTGTTATCTGCTTGATTTCTATGTTCTCTTTGATTTTGCGCTTTTCTCGAGTGTCGGCGATTCTTTTTCTTGTGATACTGTATCAATTGTTTGTTGACTTAGTTTGATTTTGTGAAGTCTGGAAAATTAGTGTTGTAAGTCCGTTGTTGTTGCTGAATCAAAATGGAATTGAATCGCGCCTCGATTTTCGATGTCTTTTGAGTTTAGATTCTGGTTTGATGGTGATTTTAGCATGTTTAATTGCATATATACTTGTCATTATCAAACACTATTCCGATTTTTGTATATGTATATTGTGAAATTAATAGTTCAATTGCTAGGATTTTGTTGAATCATTGTGTTTAACCTCGTTTTGAATCTCAGTAAGGCTAATATTAGGACGAAATATTTGCTTGTTTTCGTATTTACAATTCCTTGAGCTGTGCTTCTCTACTAGACGTAATTTAACAATGATCTGTTGCCCCAAATAGATATATTCAGCTCTGAACTTCGTCGGTTTAGAAGTGGCTTTGATCGGTTGCATTTGGCTGTGGGGCAAAGATGATCAAGCCAAACAATAGAAAGTTCGTATTGCATTTTATTTGCTCACAATCTTCTTAACTAAAATGCCTGGCCATCAGGATGAATCAATCGATTTTTCTTTCTTTCCACCTTATTTGCTTAATTTTCCCTCATTTCGTTTAAATTGTAACATGGGTTGACGGTCAAGACGCAAGAGAGGTTTAGAGAACAAAAAAGTTATGAGTTCAATTTATAATGACAACCAAATATTTTAGGGTCAGCGGGATTGGTCCGTCAGCTGGCCCAAACACTACATAGATTAAAAAAAAAGTCAAATAGAATTCTAGCTAGGTTATTAGCTAGGTCGTGGTTACTGAAAAGTTAGTTTGAACAATCAATATCCATAGGGTTGATCTTAGACTCATCAATCTTTTTGTGATTTGGAGTGGTTTTCCCCATCCTAATGCACTTAATTTCATTTCTCACTGTTGCTCTAAATTATGTAGGTGGCTGACATCAAGAGGTTGAATGGCTTTGCTGCAGATCTTCAAATGTTTGCTTTGAAGAAATTGAGGATTCCTCAACCAGGAAGACATCCACCATCACCCAGTCTCTTTGATTCTTCTGCTGTTTCAGGGTATTTCTTGCTATCAATTTCTAGAAGAATTTGCATCTTACTGTGCTTTCTGTTTGCATAATATTTCTTCATAGCAAGGTAATTTTCATAAAGCTTGTTTCCTATCCAAAAAAAAAGGAGAAAAAATGGCATTTATATATATTATATATATATATATATTTCCTGCTCTTACCTCATGCGCTAATGTGAACAGTAACGTCAGCTTCACTTTGCGCGGTACTAAAGTAAATTTAATATATGCAAATAGAAATCTTGAGAATCTTATTGTTACATGTTCTTATGAAGCCAAACAACTATGTGCTTAGTTTATTTCAAGTTATAGAAATGTGTTATAGAATTATGGCATTGTTTAAGTTGCCCTAACAACTTAAGTTGCAGAATAGTGAATACCTTTATTATTTTGACATTTGAAAATTGTGAAGGCTAGGGTGGTTATAAAGTATAATGTTTGCTACCGAATACTGTTCGGCGTTCATGCCTAGAGAACATTATATCTGTAAACATCCTATGCAGCATGTTGCCTTTAGAATTGGGATCATTTTTAATTTCTTGGAGATTTCAACTGACTTAACTTCCTTAATTTTGTTTGAAAATTTACTTGGTAGATGGTTCTAATTGTCTATAAGAATTAACACAGTCGTTTAAGAAACCTATAGTTATTCAACTTCATAGCGATATTGTAATTTTATCAATATGATTCATATTATCTTACTGAAGTTATACAAGTCATTATGCATAAGTTGAGCATCTACCATGCTGATATTTATTGCACGACTTCGAGATGGTATAATCTGTTCTATCTAATAGATTTCTCGAAATGTACTGCAGAAATGGATCTGTAGATGAAGAACCTCTACATTTAGGCCAACCTACTAATATGCTAGATTCTTTGCAATCTTTGAGAATGAAACCACCTAACCAGAAATCCTCCCCTGCCATGAGCAAGTTACAGAAGTACTACGGTCTAAAATCACGATCAGTCGAAAGTGCATTGGAAAGTATGGAGATGACATTGTACAGAACTGAAAATCCAAATCACATTGATGATGGGTTGTTTCCTAAAACCTCTGTGCTTTCTACACCACCTCCAAACATACAGCCGAAGACCAGGAACTATGCTGGTAGTATCTGGCCCGAGAATGACTCAATAACTGAACATATGTTACGTGCAGAAGCTGGAGATGGAGAGAGCGATAAATCTGATGAGAAGTTGGTTCGCAGGCGTCAAAAGGCCAAAAATGGGGTTAGCACCCCAGAAAGATGGTTGAAGGGAGAAAATAGTGGTGAAAGTTTCTTTTCTGTTTCAAAAGGAAAGAGTCTAGCCATGAGGCTAAAATCAGTTAGCAGATCAATGTTGCTTTCGGGTTCGGATCCAGTTCGAGTAAACTCCATTCCAGCAGGATTAGGAGATGTTATAAATAATGATGACATTTCTGAAGTTCATAAATCATTTAGTACATCAAACCTGAGAGACCAAGATAACAACAATTCAACATTTGTGTGGCCAGCAAGGTGGAGTTTGACGCTGGACTTGCAAGCTCTCTCAAATGTTGCAATCACAAAACATCTCTTTGATGGTTTGCCAAATCCTATCACAGGCCGCAGGAACAAAGCTGCTCTTGACTAACCATGTTAATAACTCTCTGTTCATATTCGACGCTCATCGAGCTGCTCGATTCTTTTGGTGTGGACCGTAAATTCTTTTGCAAGTATTATTACAGGAATGTATAGGTCAGGATGCGGAATAAGGGATTGATCTATTGTTGAGGACATTGACACTAGTAAATACTACACCGAGATTATTTTTTTTTGTGGCAGTTGCAACTATGTGAGTATTTATAGCCTAAAGCTGTATCTTTAGAAACATATTTTATTTGTACTTAAGATTATTTGTTGTCATTAACTATAAAGTTTCTATGAAAATATAGCTAGC AAACCAACGAATGAAGAATAGTATTTGGTAATGCTTCAAATAGAAAATCCAATCATTCTCTTCCACCTCAATTTGCTTTCAGTTCATCATAAGAAACATTCTCTTCATCGGAGCAAACGGGACCTTTTGAGTGGTAGGTGAAGAAATCCTTCCGATCCCAAGATCAGATCATTCATCTGAGATTCAATCGAAGAACAAGTTCGAGTAGATGTCCCCGTCGAATCGTTCTTCAAGTGGAGTTTGTGGCTATGGCGGACCGAATTTCATAGAGCATCAAATTTCCAGAATGGATACTCTCGCCGGCATCGCCATTAAGTACGGAGTCGAGGTGGCTGACATCAAGAGGTTGAATGGCTTTGCTGCAGATCTTCAAATGTTTGCTTTGAAGAAATTGAGGATTCCTCAACCAGGAAGACATCCACCATCACCCAGTCTCTTTGATTCTTCTGCTGTTTCAGGAAATGGATCTGTAGATGAAGAACCTCTACATTTAGGCCAACCTACTAATATGCTAGATTCTTTGCAATCTTTGAGAATGAAACCACCTAACCAGAAATCCTCCCCTGCCATGAGCAAGTTACAGAAGTACTACGGTCTAAAATCACGATCAGTCGAAAGTGCATTGGAAAGTATGGAGATGACATTGTACAGAACTGAAAATCCAAATCACATTGATGATGGGTTGTTTCCTAAAACCTCTGTGCTTTCTACACCACCTCCAAACATACAGCCGAAGACCAGGAACTATGCTGGTAGTATCTGGCCCGAGAATGACTCAATAACTGAACATATGTTACGTGCAGAAGCTGGAGATGGAGAGAGCGATAAATCTGATGAGAAGTTGGTTCGCAGGCGTCAAAAGGCCAAAAATGGGGTTAGCACCCCAGAAAGATGGTTGAAGGGAGAAAATAGTGGTGAAAGTTTCTTTTCTGTTTCAAAAGGAAAGAGTCTAGCCATGAGGCTAAAATCAGTTAGCAGATCAATGTTGCTTTCGGGTTCGGATCCAGTTCGAGTAAACTCCATTCCAGCAGGATTAGGAGATGTTATAAATAATGATGACATTTCTGAAGTTCATAAATCATTTAGTACATCAAACCTGAGAGACCAAGATAACAACAATTCAACATTTGTGTGGCCAGCAAGGTGGAGTTTGACGCTGGACTTGCAAGCTCTCTCAAATGTTGCAATCACAAAACATCTCTTTGATGGTTTGCCAAATCCTATCACAGGCCGCAGGAACAAAGCTGCTCTTGACTAACCATGTTAATAACTCTCTGTTCATATTCGACGCTCATCGAGCTGCTCGATTCTTTTGGTGTGGACCGTAAATTCTTTTGCAAGTATTATTACAGGAATGTATAGGTCAGGATGCGGAATAAGGGATTGATCTATTGTTGAGGACATTGACACTAGTAAATACTACACCGAGATTATTTTTTTTTGTGGCAGTTGCAACTATGTGAGTATTTATAGCCTAAAGCTGTATCTTTAGAAACATATTTTATTTGTACTTAAGATTATTTGTTGTCATTAACTATAAAGTTTCTATGAAAATATAGCTAGC ATGTCCCCGTCGAATCGTTCTTCAAGTGGAGTTTGTGGCTATGGCGGACCGAATTTCATAGAGCATCAAATTTCCAGAATGGATACTCTCGCCGGCATCGCCATTAAGTACGGAGTCGAGGTGGCTGACATCAAGAGGTTGAATGGCTTTGCTGCAGATCTTCAAATGTTTGCTTTGAAGAAATTGAGGATTCCTCAACCAGGAAGACATCCACCATCACCCAGTCTCTTTGATTCTTCTGCTGTTTCAGGAAATGGATCTGTAGATGAAGAACCTCTACATTTAGGCCAACCTACTAATATGCTAGATTCTTTGCAATCTTTGAGAATGAAACCACCTAACCAGAAATCCTCCCCTGCCATGAGCAAGTTACAGAAGTACTACGGTCTAAAATCACGATCAGTCGAAAGTGCATTGGAAAGTATGGAGATGACATTGTACAGAACTGAAAATCCAAATCACATTGATGATGGGTTGTTTCCTAAAACCTCTGTGCTTTCTACACCACCTCCAAACATACAGCCGAAGACCAGGAACTATGCTGGTAGTATCTGGCCCGAGAATGACTCAATAACTGAACATATGTTACGTGCAGAAGCTGGAGATGGAGAGAGCGATAAATCTGATGAGAAGTTGGTTCGCAGGCGTCAAAAGGCCAAAAATGGGGTTAGCACCCCAGAAAGATGGTTGAAGGGAGAAAATAGTGGTGAAAGTTTCTTTTCTGTTTCAAAAGGAAAGAGTCTAGCCATGAGGCTAAAATCAGTTAGCAGATCAATGTTGCTTTCGGGTTCGGATCCAGTTCGAGTAAACTCCATTCCAGCAGGATTAGGAGATGTTATAAATAATGATGACATTTCTGAAGTTCATAAATCATTTAGTACATCAAACCTGAGAGACCAAGATAACAACAATTCAACATTTGTGTGGCCAGCAAGGTGGAGTTTGACGCTGGACTTGCAAGCTCTCTCAAATGTTGCAATCACAAAACATCTCTTTGATGGTTTGCCAAATCCTATCACAGGCCGCAGGAACAAAGCTGCTCTTGACTAA MSPSNRSSSGVCGYGGPNFIEHQISRMDTLAGIAIKYGVEVADIKRLNGFAADLQMFALKKLRIPQPGRHPPSPSLFDSSAVSGNGSVDEEPLHLGQPTNMLDSLQSLRMKPPNQKSSPAMSKLQKYYGLKSRSVESALESMEMTLYRTENPNHIDDGLFPKTSVLSTPPPNIQPKTRNYAGSIWPENDSITEHMLRAEAGDGESDKSDEKLVRRRQKAKNGVSTPERWLKGENSGESFFSVSKGKSLAMRLKSVSRSMLLSGSDPVRVNSIPAGLGDVINNDDISEVHKSFSTSNLRDQDNNNSTFVWPARWSLTLDLQALSNVAITKHLFDGLPNPITGRRNKAALD Homology
BLAST of Sed0024984 vs. NCBI nr
Match: KAG6572989.1 (LysM and putative peptidoglycan-binding domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 529.3 bits (1362), Expect = 2.6e-146 Identity = 279/353 (79.04%), Postives = 303/353 (85.84%), Query Frame = 0
BLAST of Sed0024984 vs. NCBI nr
Match: XP_022994944.1 (uncharacterized protein LOC111490532 [Cucurbita maxima]) HSP 1 Score: 527.3 bits (1357), Expect = 9.9e-146 Identity = 278/352 (78.98%), Postives = 304/352 (86.36%), Query Frame = 0
BLAST of Sed0024984 vs. NCBI nr
Match: KAG7012173.1 (hypothetical protein SDJN02_24925 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 524.2 bits (1349), Expect = 8.4e-145 Identity = 278/355 (78.31%), Postives = 302/355 (85.07%), Query Frame = 0
BLAST of Sed0024984 vs. NCBI nr
Match: XP_038894003.1 (uncharacterized protein LOC120082771 isoform X1 [Benincasa hispida]) HSP 1 Score: 521.9 bits (1343), Expect = 4.1e-144 Identity = 275/353 (77.90%), Postives = 306/353 (86.69%), Query Frame = 0
BLAST of Sed0024984 vs. NCBI nr
Match: XP_023542393.1 (uncharacterized protein LOC111802312 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 521.9 bits (1343), Expect = 4.1e-144 Identity = 276/353 (78.19%), Postives = 301/353 (85.27%), Query Frame = 0
BLAST of Sed0024984 vs. ExPASy Swiss-Prot
Match: Q6P606 (LysM and putative peptidoglycan-binding domain-containing protein 4 OS=Danio rerio OX=7955 GN=lysmd4 PE=2 SV=2) HSP 1 Score: 52.8 bits (125), Expect = 9.3e-06 Identity = 44/157 (28.03%), Postives = 75/157 (47.77%), Query Frame = 0
BLAST of Sed0024984 vs. ExPASy Swiss-Prot
Match: Q5XG99 (LysM and putative peptidoglycan-binding domain-containing protein 4 OS=Homo sapiens OX=9606 GN=LYSMD4 PE=2 SV=2) HSP 1 Score: 48.1 bits (113), Expect = 2.3e-04 Identity = 23/65 (35.38%), Postives = 41/65 (63.08%), Query Frame = 0
BLAST of Sed0024984 vs. ExPASy Swiss-Prot
Match: Q8CC84 (LysM and putative peptidoglycan-binding domain-containing protein 4 OS=Mus musculus OX=10090 GN=Lysmd4 PE=2 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 3.0e-04 Identity = 21/60 (35.00%), Postives = 40/60 (66.67%), Query Frame = 0
BLAST of Sed0024984 vs. ExPASy Swiss-Prot
Match: A0JNI1 (LysM and putative peptidoglycan-binding domain-containing protein 1 OS=Bos taurus OX=9913 GN=LYSMD1 PE=2 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 3.9e-04 Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 0
BLAST of Sed0024984 vs. ExPASy Swiss-Prot
Match: Q3B7I8 (LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Xenopus tropicalis OX=8364 GN=lysmd2 PE=2 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 3.9e-04 Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = 0
BLAST of Sed0024984 vs. ExPASy TrEMBL
Match: A0A6J1K4A2 (uncharacterized protein LOC111490532 OS=Cucurbita maxima OX=3661 GN=LOC111490532 PE=4 SV=1) HSP 1 Score: 527.3 bits (1357), Expect = 4.8e-146 Identity = 278/352 (78.98%), Postives = 304/352 (86.36%), Query Frame = 0
BLAST of Sed0024984 vs. ExPASy TrEMBL
Match: A0A6J1GR40 (uncharacterized protein LOC111456756 OS=Cucurbita moschata OX=3662 GN=LOC111456756 PE=4 SV=1) HSP 1 Score: 517.3 bits (1331), Expect = 4.9e-143 Identity = 273/352 (77.56%), Postives = 300/352 (85.23%), Query Frame = 0
BLAST of Sed0024984 vs. ExPASy TrEMBL
Match: A0A5D3BJ15 (Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002680 PE=4 SV=1) HSP 1 Score: 515.4 bits (1326), Expect = 1.9e-142 Identity = 270/352 (76.70%), Postives = 304/352 (86.36%), Query Frame = 0
BLAST of Sed0024984 vs. ExPASy TrEMBL
Match: A0A1S3CUG8 (uncharacterized protein LOC103504667 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504667 PE=4 SV=1) HSP 1 Score: 515.4 bits (1326), Expect = 1.9e-142 Identity = 270/352 (76.70%), Postives = 304/352 (86.36%), Query Frame = 0
BLAST of Sed0024984 vs. ExPASy TrEMBL
Match: A0A6J1C8W2 (uncharacterized protein LOC111009048 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009048 PE=4 SV=1) HSP 1 Score: 512.3 bits (1318), Expect = 1.6e-141 Identity = 270/353 (76.49%), Postives = 300/353 (84.99%), Query Frame = 0
BLAST of Sed0024984 vs. TAIR 10
Match: AT5G08200.1 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 221.1 bits (562), Expect = 1.4e-57 Identity = 161/369 (43.63%), Postives = 209/369 (56.64%), Query Frame = 0
BLAST of Sed0024984 vs. TAIR 10
Match: AT5G23130.1 (Peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 213.8 bits (543), Expect = 2.2e-55 Identity = 146/350 (41.71%), Postives = 207/350 (59.14%), Query Frame = 0
BLAST of Sed0024984 vs. TAIR 10
Match: AT1G55000.1 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 46.2 bits (108), Expect = 6.2e-05 Identity = 20/46 (43.48%), Postives = 31/46 (67.39%), Query Frame = 0
BLAST of Sed0024984 vs. TAIR 10
Match: AT1G55000.2 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 46.2 bits (108), Expect = 6.2e-05 Identity = 20/46 (43.48%), Postives = 31/46 (67.39%), Query Frame = 0
BLAST of Sed0024984 vs. TAIR 10
Match: AT1G55000.3 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 46.2 bits (108), Expect = 6.2e-05 Identity = 20/46 (43.48%), Postives = 31/46 (67.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|