Sed0024950 (gene) Chayote v1

Overview
NameSed0024950
Typegene
OrganismSechium edule (Chayote v1)
DescriptionAP-3 complex subunit delta
LocationLG08: 35785663 .. 35788297 (+)
RNA-Seq ExpressionSed0024950
SyntenySed0024950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTTCTTCGATTTCTCATATTTCCCCAATTTTCCAGCCTTTCAATTCAACCATGAAATTCTACCCCAAATTCCCATCTGGGTATTGGCTACACAGACTAATAAGAAAGCGTAAAGTGAGCATCGAGCTATTCCATCGCTATCAATGCCAGGTTCCTCTTTCATGGACATTCTGTTCAAGCGAACTCTTAATCCATGGACAAGATTCGGTCCCTTCACGGCGTCGATATGAACTGGGCTGCTTTCCATGTCGTCGAGGTTAGTCTTGCTCTTCATTGTTTGTTTAGAATTGCAACTATTGATCTTGCCAGAGGCTTAACCCTTGACATTTTCACATTGCTCTTTAGTAGTAAGGTTTTTATTAGAAATAAGGCAATTGGTGTTGTTTTGAGGGTTTTTTAGAAATACCCTGGTGCTGTTTTGGGTCTTTTTAAAGCTTGCTTCACAGGACCCTGGATCTTATCTTCCATTCGCACCTGGGTTTTATATGATTTTGGTCAATGGAAAGAAAAATTGGGTACTGATTAAGGGCTTAAAGTTATTTTGGCTCCACTTGAACCAAGATTGGGTGGGCAAATTGTTGAGCCTATAACTATCATATGAGAAGAACAGGGGTGAAGTCATTTTTGGTTGAGTGCATTAGAACTGTAGTGGCTAACTTATCTGACTTTGAATCAGCAGTTAAACTTTCTGTTGACAAAACTAGAGAGTTTTTGGTAGATGATGATCCTAATTTAAAGTATCTTGGATTGCTCGTTGGTTTTTTTTGTGAAAGAAGGGTAACCACTCTCGTCCTTAGGGCAGGCACCGGGAGATATCGAAGGAGTAATGTCACAGGTGAGTTTCGAACCTAGGACTTTGAGGGAAACATACTCTCAAAGCCCAAGTCTTCAACCACCGTGCCACCCCTTGGGGATGGATTGCACGTTGTTTTACTTTTAATCCTTGTGACAAAACACTCAGCGGGCCGTTTTGGAGAATAAAGAGGTTGTAATCAAATCTAGAGTCCTTGCGGCTTGTGATGGCTATGGTTTCTGAGAATAATGTGGCTGAAATTTGGAAATTTTGGTGAATCTTGCGCATCAATCTGATGCTGAGTCTTGCAATGAAATTCTTGGGTCCATATCAGCTACTTGTGGCAAAAATGTATATGAAATCATCATCTCTATTGAATTGTGCTTCAATCGGATAGATTATTGAATTGTTGAATTTTATACAATTTTCTTTGGGTCCTTTAATGTGGAGACATGATATTGAATTTCTTGAGAGACCTAGAAACTTGCTCAATTTTATTGAGTTGATCAGGCAATAGATTCCTGATGGTCTAAATTAAAAGAATTCGTTCAGAAATGGAACTGGCTGAAATCTCCAAAATAATTGAACATATTGTTGATGCCTTTCGGCCCAATCTCAATAAATGCTCAAGAAAGGGTTCCGATTCCTAATAATTGATACTCAAGGAGAATCTTGATGTCTTGGAAATGATTTGCAGTGATAACTGAAGGCTCTCTTCGTTTGGAAGTTCTCTATGTGAGGAAAGGGTTGATTCATCTATAATATCCTAACTGAGCCAGGAGTGTCTGAATCATCAATTTCAACCACATCATTTGTGTTCGATTAAAGGAGAGATGGTTGGCATTTCCCCTGACAGGGTCGGGAACAGCCTTCGGGCTTCCCTGTTAACACACCTGGTTGAGGCTACCCACCTCTTGCAGGTGGATCGATAACCACATCTCTTCTCTCTGAGCCCCGTAAGCGACATGGACTGTATTATCTTCCATCAGATATGACTGATGATGCCAATAATGGATGATCCACCAGCCAACAAACTCAAGTTAGAAGATAATATGGATGATGATGATGCCCGTCTTGTCAAGCTTGCAGAACGGTCACTTGCATTCAAGAAAATGTCTAATTCTAATTCAGCCAATCCTGCCTCTGGTGGTGAGATTGAATGAAGGAGATGAATTGCCTATTATTAGTAAGAAGGCACAGTTGAAATATGAGCAGCTTTCTGATGCAGTATGTGATGTTCTTGAAGGTAGCGATACCAATACGAGGCCTACTTCCTCCCAAACAAATCAATCTTTCAGAGACCCTCTAGTAGGAGAAAAGGAAAGCAGAAACAGGATGCTGATAATCTTTTTGAATCAAAATAAGATTTGGTTGATGCTGAAGAGCAATCAAATAAGATAGATACAAGTTCGAGAAGAACACATCGACGTCACGGAAAAGATGCAAGCAATCATGTCTGGAAAAGAGTAGTGAGAAAAAAGATCAACCTCGTAATAAAGGTAAGATAACAAGTAGTCAATGGAACGGTAGCCATAAAACTAAACGAATGGGAGATGCTTCATTACCTGTGACTTCACATACAGTTATACCAGATTTCTTTCTATAGCTCGAAAAACCCGAATGAGATTTTCTACAGAACATCCCAGCATCAATGATTGTTTGATTTCCAATACTCATGTACCATGGTTAGTTCTACTGTAAAAATTTATTGATTTTTTGGTGTATATTTGGGGGGTGTGTTTTTGGATTCATATGTTCCAGAATGGATATCCATTTCAAAAACAGAGTTTCAAACTTGGATTATCTGGTTTCTAGTATTAACATGATTAATTTTTTTGAT

mRNA sequence

CAATTTCTTCGATTTCTCATATTTCCCCAATTTTCCAGCCTTTCAATTCAACCATGAAATTCTACCCCAAATTCCCATCTGGGTATTGGCTACACAGACTAATAAGAAAGCGTAAAGTGAGCATCGAGCTATTCCATCGCTATCAATGCCAGGTTCCTCTTTCATGGACATTCTGTTCAAGCGAACTCTTAATCCATGGACAAGATTCGGTCCCTTCACGGCGTCGATATGAACTGGGCTGCTTTCCATGTCGTCGAGTGATAACTGAAGGCTCTCTTCGTTTGGAAGTTCTCTATGTGAGGAAAGGGTTGATTCATCTATAATATCCTAACTGAGCCAGGAGTGTCTGAATCATCAATTTCAACCACATCATTTGTGTTCGATTAAAGGAGAGATGGTTGGCATTTCCCCTGACAGGGTCGGGAACAGCCTTCGGGCTTCCCTGTTAACACACCTGGTTGAGGCTACCCACCTCTTGCAGGTGGATCGATAACCACATCTCTTCTCTCTGAGCCCCGTAAGCGACATGGACTGTATTATCTTCCATCAGATATGACTGATGATGCCAATAATGGATGATCCACCAGCCAACAAACTCAAGTTAGAAGATAATATGGATGATGATGATGCCCGTCTTGTCAAGCTTGCAGAACGGTCACTTGCATTCAAGAAAATGTCTAATTCTAATTCAGCCAATCCTGCCTCTGGTGGTGAGATTGAATGAAGGAGATGAATTGCCTATTATTAGTAAGAAGGCACAGTTGAAATATGAGCAGCTTTCTGATGCAGTATGTGATGTTCTTGAAGGTAGCGATACCAATACGAGGCCTACTTCCTCCCAAACAAATCAATCTTTCAGAGACCCTCTAGTAGGAGAAAAGGAAAGCAGAAACAGGATGCTGATAATCTTTTTGAATCAAAATAAGATTTGGTTGATGCTGAAGAGCAATCAAATAAGATAGATACAAGTTCGAGAAGAACACATCGACGTCACGGAAAAGATGCAAGCAATCATGTCTGGAAAAGAGTAGTGAGAAAAAAGATCAACCTCGTAATAAAGGTAAGATAACAAGTAGTCAATGGAACGGTAGCCATAAAACTAAACGAATGGGAGATGCTTCATTACCTGTGACTTCACATACAGTTATACCAGATTTCTTTCTATAGCTCGAAAAACCCGAATGAGATTTTCTACAGAACATCCCAGCATCAATGATTGTTTGATTTCCAATACTCATGTACCATGGTTAGTTCTACTGTAAAAATTTATTGATTTTTTGGTGTATATTTGGGGGGTGTGTTTTTGGATTCATATGTTCCAGAATGGATATCCATTTCAAAAACAGAGTTTCAAACTTGGATTATCTGGTTTCTAGTATTAACATGATTAATTTTTTTGAT

Coding sequence (CDS)

ATGATGATGATGCCCGTCTTGTCAAGCTTGCAGAACGGTCACTTGCATTCAAGAAAATGTCTAATTCTAATTCAGCCAATCCTGCCTCTGGTGGTGAGATTGAATGAAGGAGATGAATTGCCTATTATTAGTAAGAAGGCACAGTTGAAATATGAGCAGCTTTCTGATGCAGTATGTGATGTTCTTGAAGGTAGCGATACCAATACGAGGCCTACTTCCTCCCAAACAAATCAATCTTTCAGAGACCCTCTAGTAGGAGAAAAGGAAAGCAGAAACAGGATGCTGATAATCTTTTTGAATCAAAATAAGATTTGGTTGATGCTGAAGAGCAATCAAATAAGATAG

Protein sequence

MMMMPVLSSLQNGHLHSRKCLILIQPILPLVVRLNEGDELPIISKKAQLKYEQLSDAVCDVLEGSDTNTRPTSSQTNQSFRDPLVGEKESRNRMLIIFLNQNKIWLMLKSNQIR
Homology
[Close]
BLAST of Sed0024950 vs. NCBI nr
Match: XP_004137481.1 (AP-3 complex subunit delta [Cucumis sativus] >KGN64130.1 hypothetical protein Csa_014194 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-08
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 29  PLVVRLNEGDELPIISKKAQLKYEQLSDAVCDVLEGSDTNTRPTSSQTNQS 80
           P+VVRL+EGDELP+  KK QL  EQLSDAV DVL GSD   RPTSSQTNQS
Sbjct: 825 PVVVRLDEGDELPVTRKKPQLNDEQLSDAVRDVLVGSD--ARPTSSQTNQS 873

[Close]
BLAST of Sed0024950 vs. NCBI nr
Match: XP_038894508.1 (AP-3 complex subunit delta [Benincasa hispida])

HSP 1 Score: 68.2 bits (165), Expect = 5.4e-08
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 29  PLVVRLNEGDELPIISKKAQLKYEQLSDAVCDVLEGSDTNTRPTSSQTNQS 80
           P+VVRL+EGDE P+ SKK QL  EQLSDAV DVL GSD   RPTSSQTNQ+
Sbjct: 817 PVVVRLDEGDEFPVTSKKPQLNDEQLSDAVRDVLVGSD--ARPTSSQTNQT 865

[Close]
BLAST of Sed0024950 vs. NCBI nr
Match: XP_023542505.1 (AP-3 complex subunit delta-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 7.0e-08
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 29  PLVVRLNEGDELPIISKKAQLKYEQLSDAVCDVLEGSDTNTRPTSSQTNQS 80
           P+VVRL EGDELP++ KK QLK E+LSDAV  VLEGSD   RPTSSQT QS
Sbjct: 826 PVVVRLEEGDELPVMRKKPQLKDEELSDAVRHVLEGSD--ARPTSSQTKQS 874

[Close]
BLAST of Sed0024950 vs. NCBI nr
Match: XP_008459026.1 (PREDICTED: AP-3 complex subunit delta [Cucumis melo] >TYJ98998.1 AP-3 complex subunit delta [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 29  PLVVRLNEGDELPIISKKAQLKYEQLSDAVCDVLEGSDTNTRPTSSQTNQS 80
           P+VVRL+EGDELP+  KK QL  EQLSDAV DVL GSD   RPTSSQT+QS
Sbjct: 825 PVVVRLDEGDELPVTRKKPQLNDEQLSDAVRDVLVGSD--ARPTSSQTDQS 873

[Close]
BLAST of Sed0024950 vs. NCBI nr
Match: XP_022137424.1 (AP-3 complex subunit delta [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 4.5e-07
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 29  PLVVRLNEGDELPIISKKAQLKYEQLSDAVCDVLEGSDTNTRPTSSQTNQS 80
           P+VVRL+EGDELPI  KK Q K + LSDAV DVL GS  N RPTSSQTNQS
Sbjct: 825 PVVVRLDEGDELPITRKKPQSKDDLLSDAVRDVLVGS--NARPTSSQTNQS 873

[Close]
BLAST of Sed0024950 vs. ExPASy TrEMBL
Match: A0A0A0LQE4 (AP-3 complex subunit delta OS=Cucumis sativus OX=3659 GN=Csa_1G042420 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 29  PLVVRLNEGDELPIISKKAQLKYEQLSDAVCDVLEGSDTNTRPTSSQTNQS 80
           P+VVRL+EGDELP+  KK QL  EQLSDAV DVL GSD   RPTSSQTNQS
Sbjct: 825 PVVVRLDEGDELPVTRKKPQLNDEQLSDAVRDVLVGSD--ARPTSSQTNQS 873

[Close]
BLAST of Sed0024950 vs. ExPASy TrEMBL
Match: A0A5D3BLE5 (AP-3 complex subunit delta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002020 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.8e-08
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 29  PLVVRLNEGDELPIISKKAQLKYEQLSDAVCDVLEGSDTNTRPTSSQTNQS 80
           P+VVRL+EGDELP+  KK QL  EQLSDAV DVL GSD   RPTSSQT+QS
Sbjct: 825 PVVVRLDEGDELPVTRKKPQLNDEQLSDAVRDVLVGSD--ARPTSSQTDQS 873

[Close]
BLAST of Sed0024950 vs. ExPASy TrEMBL
Match: A0A1S3C9S7 (AP-3 complex subunit delta OS=Cucumis melo OX=3656 GN=LOC103498233 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.8e-08
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 29  PLVVRLNEGDELPIISKKAQLKYEQLSDAVCDVLEGSDTNTRPTSSQTNQS 80
           P+VVRL+EGDELP+  KK QL  EQLSDAV DVL GSD   RPTSSQT+QS
Sbjct: 825 PVVVRLDEGDELPVTRKKPQLNDEQLSDAVRDVLVGSD--ARPTSSQTDQS 873

[Close]
BLAST of Sed0024950 vs. ExPASy TrEMBL
Match: A0A6J1C773 (AP-3 complex subunit delta OS=Momordica charantia OX=3673 GN=LOC111008875 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-07
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 29  PLVVRLNEGDELPIISKKAQLKYEQLSDAVCDVLEGSDTNTRPTSSQTNQS 80
           P+VVRL+EGDELPI  KK Q K + LSDAV DVL GS  N RPTSSQTNQS
Sbjct: 825 PVVVRLDEGDELPITRKKPQSKDDLLSDAVRDVLVGS--NARPTSSQTNQS 873

[Close]
BLAST of Sed0024950 vs. ExPASy TrEMBL
Match: A0A6J1KEX8 (AP-3 complex subunit delta OS=Cucurbita maxima OX=3661 GN=LOC111495195 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.9e-07
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 29  PLVVRLNEGDELPIISKKAQLKYEQLSDAVCDVLEGSDTNTRPTSSQTNQS 80
           P+VVRL+EGDELP++ KK Q K EQLSDA+ +VL GSD    PTSSQTNQS
Sbjct: 802 PVVVRLDEGDELPVMRKKPQSKDEQLSDAIRNVLVGSD--VMPTSSQTNQS 850

The following BLAST results are available for this feature:
BLAST of Sed0024950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137481.13.1e-0874.51AP-3 complex subunit delta [Cucumis sativus] >KGN64130.1 hypothetical protein Cs... [more]
XP_038894508.15.4e-0872.55AP-3 complex subunit delta [Benincasa hispida][more]
XP_023542505.17.0e-0872.55AP-3 complex subunit delta-like [Cucurbita pepo subsp. pepo][more]
XP_008459026.11.2e-0772.55PREDICTED: AP-3 complex subunit delta [Cucumis melo] >TYJ98998.1 AP-3 complex su... [more]
XP_022137424.14.5e-0772.55AP-3 complex subunit delta [Momordica charantia][more]
BLAST of Sed0024950 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0024950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQE41.5e-0874.51AP-3 complex subunit delta OS=Cucumis sativus OX=3659 GN=Csa_1G042420 PE=3 SV=1[more]
A0A5D3BLE55.8e-0872.55AP-3 complex subunit delta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A1S3C9S75.8e-0872.55AP-3 complex subunit delta OS=Cucumis melo OX=3656 GN=LOC103498233 PE=3 SV=1[more]
A0A6J1C7732.2e-0772.55AP-3 complex subunit delta OS=Momordica charantia OX=3673 GN=LOC111008875 PE=3 S... [more]
A0A6J1KEX82.9e-0768.63AP-3 complex subunit delta OS=Cucurbita maxima OX=3661 GN=LOC111495195 PE=3 SV=1[more]
BLAST of Sed0024950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0024950.1Sed0024950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006896 Golgi to vacuole transport
biological_process GO:0006623 protein targeting to vacuole
cellular_component GO:0030123 AP-3 adaptor complex
cellular_component GO:0010008 endosome membrane
cellular_component GO:0005794 Golgi apparatus