Sed0024867 (gene) Chayote v1

Overview


Name	Sed0024867
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG04: 11485593 .. 11487186 (-)
RNA-Seq Expression	Sed0024867
Synteny	Sed0024867

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCAAAATCGACATCAAATCCTTGTGTGGAGCACACTCTAAAAGATCAAAGTAATTTATTATCTTCCTTAAAGCAAGTCTCTACTCTGCCGCGATCAATATGTTTAACTCGATTGAATAAGATGATGTCATTATAAAAACATGAATGTATTTTGTCAATATATATTAAATATTATTTTCTTATTTTTGTAGTTATGGAGATTGAGCCTCCTCCTCTTCCTCCCGTTTCTCCTCCTCCCGATATGTTCATCCATATTTTTAATTCATTAAATATTGTTTCAATAATGGTTTCAAAATCGACATTAAATCCTCGTGTGGAACATAGTCTAAAAGATTAAAGTAATTTATTATCTTCCTTAAAGCAGCCTCTACTCTGCGGTGATCAATATGTTTAACTCGGTTGAATAAGATGATGTCCATTATAAAAAAAAAAATAAAAAAAATATAAAATAAAAAAACATGAATGTCTTTGTCCATATATTAATGATAGTTATTTTCTTATTTTTGTAGTTATGGAGATTGAACCTCCTCCTCTTCCTCCGGTTTCTCCTCCACCCCCTCCCCCGCCTGGTATATTCATTCATTTTTAATTCGTTAAATATTGTTCCAAAAATGGTTTTAAAATCGACATCTAATTCTTGTGTGGAACATAATCTAAGAGATAAAGCAATTTATTATCTTCCTTAAAGCAAGTCTCTCCTATGTCGTGAACAATATGTTTAACTTGATCGTATAACATGACGTCCATTATCAAAATTTGTTAACATGAATATATTTGTTAATAAATTAATAATAGTTATTTTCTTATTTTTGTAGTTATGGAGATTGAACCTCCTCCTCTTCCTCCGATTTCTCCTCCACCCCCTCCTCCCGATATATTCATTCGTATTTTTAATTCGTTAAAATGGTTTTAAAATTGACATCTAATTCTTGTGTGGAACATAATCTAAAAGATTAAAGTAATTTATTATCTTCCTTAAAGCAAGTCTCTCCTATGTCGGGAACAATATGTTTAACTTGATTGTATAAGATATGATGTTCATTATTAAAATTTGTTATCATGAATATATTTGTTAATATATTAACAATAGTTATTTTCTTATTTTTGTAGTTATGGAGATTGAGCCTCCTCCTCTTCCACCTGTTTCTCCTCCTCCCCCTCCTCCTCCTGGTATGTTCATCCTTCTTTTTAATTCTGTAAATATTGTTTCAAAAAGGGTTTCCAAAACCGACATTGAATCATCGCATGGAACATAGTTTAAATTAATAAAGTAAACTATTATTTTCCTTAAAAGGAAATCTCAACTATGTCGTGATTAGTATATTTCACTTGATTGTATAAGATGATATCCATTATCAAAATTTGTTAATAATATTAACAATAAATTTCTTATTTTTGTAGTTATGGAGAAACAAATTTCGCCTGAATTTCTTGATGTTATACTCGACATCGCTACCATGATCATACAAAAAGAGAACCCTTATGTCAAAGTACAACCAATCTCATATGGAACACCAATGATTTTAAATCTCGATCCTACTCAAGTTTGGGGTATTTTCAATATCAATGATGCGATGGTTGTGGGTTAG

mRNA sequence

ATGGTTTCAAAATCGACATCAAATCCTTGTGTGGAGCACACTCTAAAAGATCAAATTATGGAGATTGAGCCTCCTCCTCTTCCTCCCGTTTCTCCTCCTCCCGATATGTTCATCCATATTTTTAATTCATTAAATATTGTTTCAATAATGGTTTCAAAATCGACATTAAATCCTCTTATGGAGATTGAACCTCCTCCTCTTCCTCCGGTTTCTCCTCCACCCCCTCCCCCGCCTGTTATGGAGATTGAACCTCCTCCTCTTCCTCCGATTTCTCCTCCACCCCCTCCTCCCGATATATTCATTCTTATGGAGATTGAGCCTCCTCCTCTTCCACCTGTTTCTCCTCCTCCCCCTCCTCCTCCTGTTATGGAGAAACAAATTTCGCCTGAATTTCTTGATGTTATACTCGACATCGCTACCATGATCATACAAAAAGAGAACCCTTATGTCAAAGTACAACCAATCTCATATGGAACACCAATGATTTTAAATCTCGATCCTACTCAAGTTTGGGGTATTTTCAATATCAATGATGCGATGGTTGTGGGTTAG

Coding sequence (CDS)

ATGGTTTCAAAATCGACATCAAATCCTTGTGTGGAGCACACTCTAAAAGATCAAATTATGGAGATTGAGCCTCCTCCTCTTCCTCCCGTTTCTCCTCCTCCCGATATGTTCATCCATATTTTTAATTCATTAAATATTGTTTCAATAATGGTTTCAAAATCGACATTAAATCCTCTTATGGAGATTGAACCTCCTCCTCTTCCTCCGGTTTCTCCTCCACCCCCTCCCCCGCCTGTTATGGAGATTGAACCTCCTCCTCTTCCTCCGATTTCTCCTCCACCCCCTCCTCCCGATATATTCATTCTTATGGAGATTGAGCCTCCTCCTCTTCCACCTGTTTCTCCTCCTCCCCCTCCTCCTCCTGTTATGGAGAAACAAATTTCGCCTGAATTTCTTGATGTTATACTCGACATCGCTACCATGATCATACAAAAAGAGAACCCTTATGTCAAAGTACAACCAATCTCATATGGAACACCAATGATTTTAAATCTCGATCCTACTCAAGTTTGGGGTATTTTCAATATCAATGATGCGATGGTTGTGGGTTAG

Protein sequence

MVSKSTSNPCVEHTLKDQIMEIEPPPLPPVSPPPDMFIHIFNSLNIVSIMVSKSTLNPLMEIEPPPLPPVSPPPPPPPVMEIEPPPLPPISPPPPPPDIFILMEIEPPPLPPVSPPPPPPPVMEKQISPEFLDVILDIATMIIQKENPYVKVQPISYGTPMILNLDPTQVWGIFNINDAMVVG

Homology

[Close]

BLAST of Sed0024867 vs. NCBI nr
Match: MBV9053275.1 (FecR domain-containing protein [Hyphomicrobiales bacterium])

HSP 1 Score: 55.1 bits (131), Expect = 7.5e-04
Identity = 51/102 (50.00%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 20  MEIEPPPLPPVSPPPDMFIHIFNSLNIVSIMVSKSTLNPLMEIEPPPLPPVSPPPPPPPV 79
           + + PPP PP  PPP                VS     P   + PPP PPVSPPPPPPP 
Sbjct: 353 LALSPPPPPPPPPPP----------------VSPPPPPPPPPVSPPPPPPVSPPPPPPPP 412

Query: 80  MEIEPPPLPPISPPPPPPDIFILMEIEPPPLPPVSPPPPPPP 122
           +   PPP PP+SPPPPPP     +   PPP PPVSPPPPPPP
Sbjct: 413 VS-PPPPPPPVSPPPPPP-----VSPPPPPPPPVSPPPPPPP 432

[Close]

BLAST of Sed0024867 vs. NCBI nr
Match: GFV81059.1 (hypothetical protein TNCV_2270431 [Trichonephila clavipes])

HSP 1 Score: 54.7 bits (130), Expect = 9.8e-04
Identity = 47/100 (47.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 22  IEPPPLPPVSPPPDMFIHIFNSLNIVSIMVSKSTLNPLMEIEPPPLPPVSPPPPPPPVME 81
           ++PPP PPV PPP   I                   P   ++PPP PPV PPPPPPP   
Sbjct: 167 VQPPPRPPVQPPPRPPIQ----------------PPPRPPVQPPPRPPVQPPPPPPPKPP 226

Query: 82  IEPPPLPPISPPPPPPDIFILMEIEPPPLPPVSPPPPPPP 122
           + PPP PP+ PPP PP   +     PPP PPV PPPPPPP
Sbjct: 227 VRPPPRPPVQPPPRPP---VQPPPRPPPRPPVQPPPPPPP 247

The following BLAST results are available for this feature:

BLAST of Sed0024867 vs. NCBI nr


Match Name	E-value	Identity	Description
MBV9053275.1	7.5e-04	50.00	FecR domain-containing protein [Hyphomicrobiales bacterium]	[more]
GFV81059.1	9.8e-04	47.00	hypothetical protein TNCV_2270431 [Trichonephila clavipes]	[more]

BLAST of Sed0024867 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0024867 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0024867 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.10.10	Trypsin Inhibitor V, subunit A	coord: 122..183 e-value: 3.4E-5 score: 26.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..90
IPR036354	Proteinase inhibitor I13, potato inhibitor I superfamily	SUPERFAMILY	54654	CI-2 family of serine protease inhibitors	coord: 125..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024867.1	Sed0024867.1	mRNA