Sed0024867 (gene) Chayote v1

Overview
NameSed0024867
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG04: 11485593 .. 11487186 (-)
RNA-Seq ExpressionSed0024867
SyntenySed0024867
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCAAAATCGACATCAAATCCTTGTGTGGAGCACACTCTAAAAGATCAAAGTAATTTATTATCTTCCTTAAAGCAAGTCTCTACTCTGCCGCGATCAATATGTTTAACTCGATTGAATAAGATGATGTCATTATAAAAACATGAATGTATTTTGTCAATATATATTAAATATTATTTTCTTATTTTTGTAGTTATGGAGATTGAGCCTCCTCCTCTTCCTCCCGTTTCTCCTCCTCCCGATATGTTCATCCATATTTTTAATTCATTAAATATTGTTTCAATAATGGTTTCAAAATCGACATTAAATCCTCGTGTGGAACATAGTCTAAAAGATTAAAGTAATTTATTATCTTCCTTAAAGCAGCCTCTACTCTGCGGTGATCAATATGTTTAACTCGGTTGAATAAGATGATGTCCATTATAAAAAAAAAAATAAAAAAAATATAAAATAAAAAAACATGAATGTCTTTGTCCATATATTAATGATAGTTATTTTCTTATTTTTGTAGTTATGGAGATTGAACCTCCTCCTCTTCCTCCGGTTTCTCCTCCACCCCCTCCCCCGCCTGGTATATTCATTCATTTTTAATTCGTTAAATATTGTTCCAAAAATGGTTTTAAAATCGACATCTAATTCTTGTGTGGAACATAATCTAAGAGATAAAGCAATTTATTATCTTCCTTAAAGCAAGTCTCTCCTATGTCGTGAACAATATGTTTAACTTGATCGTATAACATGACGTCCATTATCAAAATTTGTTAACATGAATATATTTGTTAATAAATTAATAATAGTTATTTTCTTATTTTTGTAGTTATGGAGATTGAACCTCCTCCTCTTCCTCCGATTTCTCCTCCACCCCCTCCTCCCGATATATTCATTCGTATTTTTAATTCGTTAAAATGGTTTTAAAATTGACATCTAATTCTTGTGTGGAACATAATCTAAAAGATTAAAGTAATTTATTATCTTCCTTAAAGCAAGTCTCTCCTATGTCGGGAACAATATGTTTAACTTGATTGTATAAGATATGATGTTCATTATTAAAATTTGTTATCATGAATATATTTGTTAATATATTAACAATAGTTATTTTCTTATTTTTGTAGTTATGGAGATTGAGCCTCCTCCTCTTCCACCTGTTTCTCCTCCTCCCCCTCCTCCTCCTGGTATGTTCATCCTTCTTTTTAATTCTGTAAATATTGTTTCAAAAAGGGTTTCCAAAACCGACATTGAATCATCGCATGGAACATAGTTTAAATTAATAAAGTAAACTATTATTTTCCTTAAAAGGAAATCTCAACTATGTCGTGATTAGTATATTTCACTTGATTGTATAAGATGATATCCATTATCAAAATTTGTTAATAATATTAACAATAAATTTCTTATTTTTGTAGTTATGGAGAAACAAATTTCGCCTGAATTTCTTGATGTTATACTCGACATCGCTACCATGATCATACAAAAAGAGAACCCTTATGTCAAAGTACAACCAATCTCATATGGAACACCAATGATTTTAAATCTCGATCCTACTCAAGTTTGGGGTATTTTCAATATCAATGATGCGATGGTTGTGGGTTAG

mRNA sequence

ATGGTTTCAAAATCGACATCAAATCCTTGTGTGGAGCACACTCTAAAAGATCAAATTATGGAGATTGAGCCTCCTCCTCTTCCTCCCGTTTCTCCTCCTCCCGATATGTTCATCCATATTTTTAATTCATTAAATATTGTTTCAATAATGGTTTCAAAATCGACATTAAATCCTCTTATGGAGATTGAACCTCCTCCTCTTCCTCCGGTTTCTCCTCCACCCCCTCCCCCGCCTGTTATGGAGATTGAACCTCCTCCTCTTCCTCCGATTTCTCCTCCACCCCCTCCTCCCGATATATTCATTCTTATGGAGATTGAGCCTCCTCCTCTTCCACCTGTTTCTCCTCCTCCCCCTCCTCCTCCTGTTATGGAGAAACAAATTTCGCCTGAATTTCTTGATGTTATACTCGACATCGCTACCATGATCATACAAAAAGAGAACCCTTATGTCAAAGTACAACCAATCTCATATGGAACACCAATGATTTTAAATCTCGATCCTACTCAAGTTTGGGGTATTTTCAATATCAATGATGCGATGGTTGTGGGTTAG

Coding sequence (CDS)

ATGGTTTCAAAATCGACATCAAATCCTTGTGTGGAGCACACTCTAAAAGATCAAATTATGGAGATTGAGCCTCCTCCTCTTCCTCCCGTTTCTCCTCCTCCCGATATGTTCATCCATATTTTTAATTCATTAAATATTGTTTCAATAATGGTTTCAAAATCGACATTAAATCCTCTTATGGAGATTGAACCTCCTCCTCTTCCTCCGGTTTCTCCTCCACCCCCTCCCCCGCCTGTTATGGAGATTGAACCTCCTCCTCTTCCTCCGATTTCTCCTCCACCCCCTCCTCCCGATATATTCATTCTTATGGAGATTGAGCCTCCTCCTCTTCCACCTGTTTCTCCTCCTCCCCCTCCTCCTCCTGTTATGGAGAAACAAATTTCGCCTGAATTTCTTGATGTTATACTCGACATCGCTACCATGATCATACAAAAAGAGAACCCTTATGTCAAAGTACAACCAATCTCATATGGAACACCAATGATTTTAAATCTCGATCCTACTCAAGTTTGGGGTATTTTCAATATCAATGATGCGATGGTTGTGGGTTAG

Protein sequence

MVSKSTSNPCVEHTLKDQIMEIEPPPLPPVSPPPDMFIHIFNSLNIVSIMVSKSTLNPLMEIEPPPLPPVSPPPPPPPVMEIEPPPLPPISPPPPPPDIFILMEIEPPPLPPVSPPPPPPPVMEKQISPEFLDVILDIATMIIQKENPYVKVQPISYGTPMILNLDPTQVWGIFNINDAMVVG
Homology
[Close]
BLAST of Sed0024867 vs. NCBI nr
Match: MBV9053275.1 (FecR domain-containing protein [Hyphomicrobiales bacterium])

HSP 1 Score: 55.1 bits (131), Expect = 7.5e-04
Identity = 51/102 (50.00%), Postives = 57/102 (55.88%), Query Frame = 0 

Query: 20  MEIEPPPLPPVSPPPDMFIHIFNSLNIVSIMVSKSTLNPLMEIEPPPLPPVSPPPPPPPV 79
           + + PPP PP  PPP                VS     P   + PPP PPVSPPPPPPP 
Sbjct: 353 LALSPPPPPPPPPPP----------------VSPPPPPPPPPVSPPPPPPVSPPPPPPPP 412

Query: 80  MEIEPPPLPPISPPPPPPDIFILMEIEPPPLPPVSPPPPPPP 122
           +   PPP PP+SPPPPPP     +   PPP PPVSPPPPPPP
Sbjct: 413 VS-PPPPPPPVSPPPPPP-----VSPPPPPPPPVSPPPPPPP 432

[Close]
BLAST of Sed0024867 vs. NCBI nr
Match: GFV81059.1 (hypothetical protein TNCV_2270431 [Trichonephila clavipes])

HSP 1 Score: 54.7 bits (130), Expect = 9.8e-04
Identity = 47/100 (47.00%), Postives = 54/100 (54.00%), Query Frame = 0 

Query: 22  IEPPPLPPVSPPPDMFIHIFNSLNIVSIMVSKSTLNPLMEIEPPPLPPVSPPPPPPPVME 81
           ++PPP PPV PPP   I                   P   ++PPP PPV PPPPPPP   
Sbjct: 167 VQPPPRPPVQPPPRPPIQ----------------PPPRPPVQPPPRPPVQPPPPPPPKPP 226

Query: 82  IEPPPLPPISPPPPPPDIFILMEIEPPPLPPVSPPPPPPP 122
           + PPP PP+ PPP PP   +     PPP PPV PPPPPPP
Sbjct: 227 VRPPPRPPVQPPPRPP---VQPPPRPPPRPPVQPPPPPPP 247

The following BLAST results are available for this feature:
BLAST of Sed0024867 vs. NCBI nr
Match NameE-valueIdentityDescription
MBV9053275.17.5e-0450.00FecR domain-containing protein [Hyphomicrobiales bacterium][more]
GFV81059.19.8e-0447.00hypothetical protein TNCV_2270431 [Trichonephila clavipes][more]
BLAST of Sed0024867 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0024867 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0024867 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.10.10Trypsin Inhibitor V, subunit Acoord: 122..183
e-value: 3.4E-5
score: 26.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..90
IPR036354Proteinase inhibitor I13, potato inhibitor I superfamilySUPERFAMILY54654CI-2 family of serine protease inhibitorscoord: 125..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0024867.1Sed0024867.1mRNA