Sed0024824 (gene) Chayote v1

Overview


Name	Sed0024824
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein DCL homolog, chloroplastic-like
Location	LG13: 22848445 .. 22853512 (+)
RNA-Seq Expression	Sed0024824
Synteny	Sed0024824

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGATATTCTCTACTATTTCTCTTTTCTCAAAAAAGTGTAAATGGGCCTGTTCAAATTCACGAGGAGTCGCTACTATTATATTCACGGGCCCATGAAAAATGGCCCAATAAGCCCAATAATCCATCTGTGAAACAGAGCTGTATCACTTCAAGCTCAGCACCGAGCTCCTCTCCACATGAACACTTGATCTTCATGGCTGCTTCTTTGCTGCTCAGAATCCATCCTCTCCTTCGATTTGCCCTCAGCAACCGCCGGCGATGTACCGGAATCGTGCAGCAGGCGGCTCGCCGGCCCTGCTGCACTGCGGCGGCGGCGTCTTCTCCATCGGACGGCAACTTGACATCTGCTGCTGATACTACCACTTCGGTTTTGACTTCCAGTGACTCAGCGAAGCCCCAAAGGTGGTACGAGCCTGATTATCGCAAGTGGAAGGACCAGGAAGAGGAAATTCTCAGCGACATCGAGCCTATCGTATTCCTCGCCAAAGAGATTCTCCACTCCAATAGGTTTGTTCTGTTCGAGCAATTTCATTACCGGAGTTTATACTTTTTATTACTGGATTGCGTGTTTTCTTTGTGAACTGCTTGAAAAGAAACCTCCGTAATTTCCAGCAATGTATTATGTCAATGAGTAGATTGGAGAAAACACGTATGCTAAAATTCAGACTGACGTATAGTACTTGTTTTGAGTCAGATGTTGAAAGAAATTTCATTTTTAAATTAACCAAAAATTTCTGTCCAAGAAAATCCAGAATACCGTGATAAACTCAAGATAAAGAATCCCAGTGTCCGGCTAGGAACAGGCGTAGTTACCCTGAGTATAGTGGCGCGTAGCTCCGATTTCCTTGTTAATAAAAAACAAAGATAAGGAATGATTACGGGTGCAAAGGTACCTGCATCACCAATTATTTGGTTTTCTTTACTTGTAACTTGATTCGCCAAAAGGAGTACTTGAATGGAGTGGTATATTACATATGCTTTGTGTTTTCATGGCAATATGATATTTTCTTTCGTTGTCAATTCCTAGCTGGATCATTTTAGTCGAATCATTTTTTTTTTATACCAACAAGAATACCAGCAAAGGGTAAGCTTTTAAAAACATTTTAGTAGAGAGAAAAAGTTGCTGCCAGTAAGTTAGAAGCCCGGGTTAGGAAGAGAAACTGGCAATATCATTAATGGGGTTGAAACTTTATTTTGGAATGTTAAGACCAGATTTTCACTACTGGCATATGTGTATTTGTGGAATGCTAACGGTTATTAGGATCTCTCTTGAACATGGAGGGAAGACTTAATTAATGGGCTCATCTTTTAGTTTTATGCGAAGAGTAGTCAGTCGTGCGTGTTCGGCTGGAGGGAATGAATGTTTTGGACGTTGGGGCCCTTGGGGTAATTTCATTAATGATTGATAGTAGGTGATGTAGAGGAAAAAGGTATGGATTCGTGTGCTTGGTAGTTTCATTTTGGGACAGATTCAACCCTCTCAAAATATTTGCTAGATTTTCTTCCATTTGGTTGCTAACTGGAGTCTTGAATGAAATCTATCTGCTTCTCTTTTATTTTTTCCAGAATAGTATTCAATTCCTAATGGCTAATATTATGATAATTGAGATCAAAAGTTATGTTCAGTGGGAACTAGTGGATGACCACGCAGTTTTTAACTGGTAAAAGCAGTGCTTTCCTTGATGTAGGCTAGGTTGCAAGGTTGTGGTCTTATTAAGCACTTTTCCATATGATGTATTGCTCATGTTTTTGTTTTACGACCACACTTTGCTCCTATGATATTATATCCCCTTCACTTAAGGACCTCTTTTTTTTATACTAGGTATGTAGATGGGGAGCGATTGACATCTGAGGACGAGAGAATCGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGCATGTGGACTTGAATCCATTATGGTATGATTTTTTCTGGACTACATGGTTTAGAGTTCTTACTATGTTTCAAATATGCAGTTTGCTTCCTTTCTTTGTTAGGTAAGGTTGTATAGAAGTAAAAGCAGATAAAGGAACAATTGACATTTGGTTCTGGATATTTACAAAAGCTCAAAATACAACTGGTGACCTCTTGAGTCTTACCTATACTTTAAAGCAAAGCCCGTACAAGATTAATTTCGAACAAATTCACACTGTAGGCCTTGTGTAATAGGATCTCATAATGTGTCTTTGTCCTTTCTTTGGTGGTGGTGGTAGGAGTGGTAAAGATCTCATGAAATTCATTTACTAGAAGTCTAAACATGTTGCAGTTGCCTTGACTTTGTGCTTGTGAGCACCACAAACCTTATTAAATGAATATGGCAACTCTAGCCCTGAAAAATAGAATGGATGGGATGATAGGAACCAAGCTGATAGAGCCTTGAGATAAGAAAGGATTATTAAGTTGGGAAGACATATGAGATCCCTCCACTAACTCCTCTCATTTCCATTATACATTGAATCTGACATGAAATCAATAATTTCTGCTATTCCAAACTAGTCTTGGTTAGTTTCTCCATTACAGATTAAAAAGGGAAATTGCCTACCAATCATCAACTAAGCGTAGTAACGTAAAGGTAAAAAATTGGATTTGGACAATAACTGCAAAAGAAATCATGTAAATGGAAAAAAAAAGTTGGCATTAGCAAGAGCTTCTGGCTTCTGGCTTCATAACCATAATACTTGCAGTCCTATCCAAAAAAAACCATAATACTTGCAGGCGATTAAAAAACTCCCCACTATAAAACTTCTCTCTAATAAAACTTTCAAGTGACTCAACGAAACTCTAACCCAAAAGCTTTCCTCCTCTTCCTTTGGCGCCACTCTTCACTGGCGTTGGAGGAAGCACAATAGGACCGACAGCCGATGGCTCCTCGAAACGCGGTGCAGGGAGAAAAGAACAATGATACCCTAATTTCTATTTCGACTGGTTCGATGTGTGTTGAATTGAATCGGTCCTTCAAAATCAGTTTGGTCGTAACATATTGGTTCTTTTTTTTTCCTCTTTTTAAAGGCATCGCTGAAACATGTGAGATCGTTGACCTAATAGTGAGTGCTACTTCATGAGTTCGAATGATAGGGCTTCATTTTGCAGTTGCTCCTCGATATTAGTGTTGATTAGACGTTGAATGCAACTCTGCGTGTGAGAGCTTCATATGTGAAATTTACTTTGAAGCATCACTTCCCGATGATTTCCCAGCTAAAGTATCAAGCAGAATATTTTGGTGGTTCTAGTGACGAAGCCTCCAACTCTCTTCCTTCTTTTAGCTTCAGTGACACGGCTCACTCTATCGTTGATCCGATTGGCTATGGCCTATGGATCTTGGGTCTTTTTCATATTGTGGATTAACCAATTGAGATGGTAGTTTTTCATTGTGCAACTGCTTCTTGACACTGGTGTTGATCGGGAGAACATATGTGATGCCTTATGCGTGTGGGAGATCTGCGACTGCGAGAGCCAGTTTGTCCTTTTACGACATACACATTACACCACCTGGTGTTGACATGGGATTAGTCTAGTCCCCTCCCCCGTTCTCCCTCTGAATTCCCCGTCATACAATTTCATCTCTCGGATGTGTAGTTGATTCATGAGATAATTTCTTGGATGTGCCTTGCATAAGATAAAGTAACTCTATGGTTCATGACTTTGCTTGGGCAGCCTACTTTTGGCTCTTTTTGTTGGTTGTCTTCTTTCCCATGAATTCTGGATATTTGGATTCTGGAAATTGTAGCTGACCTAATTTTCTGTTTTTCATGACACTACCTTCATTGTCTAGCCAAACAAAATCATCATGTTCTTATTTTTTCTCTTTCCTGCCCACTTCTCATTTCAAGATGCAGTGCACATCACTCTTTAGACTTCCAATCTAGATTGCTTATTCAAAGAAGGGCAAAACTGGAACCACGATTGTTTCTGACATTTCGAAGTATTGGTTTTAGTTCATTTTGTACTTAAAAAAAAGTTTTAGTTATTTTCTACATTTGAGTTTTTTGTCCTATAGAGATCATTTCTTTTAGTCAGCTATGTTGCTTTTGATGTTTTGTTTATATGCTGTGTTTCTGGAAAGACTGGGCATCGTCTGGTATTTTGTGTTGCTTTATGACGTTTGAAGATCTATTTTTTTTTAACAAACACGTTATGAGATAAATTGTTTGTTATACTTCGTGAATTTTGTGCAAAGAAAGGGAATTCCTCATTACATTTCTGATATCAACGAACTTTACTTGTATATTGTCTATTCGAGTTATTCGGCTTGAAATCATTATTTTTTTTATTTTAAAAGATTATTTATGCTATTTTTGCTGTTGAAGGTTGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTATAAGGACCGATGGTGGATGGATCGACTTCTCATATCAAAAGTGTCTTCGGGCATATATCCGAAATAAATACCCTTCATATGCCGAGCGGTTTATTCAAGAACATTTCAAACGTGGTAGTTGATGAATTTGTGCTAGCCTTGATGCTGACATGTGGGTATTTGTTTTGGTTAAGAGTAATGTATGAATGATTAAATGTTTTCTTCATGGTTTGGTGGCCTATATGAAGGCAAGATGTACAGATTGTCAATGCAGTAGATATCATGTCATAGACGCACTGCACAATTTTTGAAAATGAGAACAATAGATAATCATTGAAGTGAAAAGTGAAACTTCTCTTTGTTGACTTGCAGCTCTGTTTTGTATGTGGTTAAGATTACTGGATGTAGATTATATGATAACAGGGACATTTCTATTATCCAATCAGACTGGGAATGCAGAACAAGATTATTAATAATGTTTGAAAAGTAGCAGATGATTGAAAAGTTTAACCTGGTTTAGCCAACAAGAGCAATAGTTCGGCAGGACTAGTGTATACCTATGAACCGAAAAGTTTAACCTGGTTTATTTAATCTTCTCTACATTTCCTAGTTCCTACCATGTGGTAGATGCAGATCTTGCGTATGTTCTAAGCTTCATGATGGATCATCCAAGAGAGGAGAAATAATCAAACCTATGGCGCATGAGCAGGTTGAAGG

mRNA sequence

GTAGATATTCTCTACTATTTCTCTTTTCTCAAAAAAGTGTAAATGGGCCTGTTCAAATTCACGAGGAGTCGCTACTATTATATTCACGGGCCCATGAAAAATGGCCCAATAAGCCCAATAATCCATCTGTGAAACAGAGCTGTATCACTTCAAGCTCAGCACCGAGCTCCTCTCCACATGAACACTTGATCTTCATGGCTGCTTCTTTGCTGCTCAGAATCCATCCTCTCCTTCGATTTGCCCTCAGCAACCGCCGGCGATGTACCGGAATCGTGCAGCAGGCGGCTCGCCGGCCCTGCTGCACTGCGGCGGCGGCGTCTTCTCCATCGGACGGCAACTTGACATCTGCTGCTGATACTACCACTTCGGTTTTGACTTCCAGTGACTCAGCGAAGCCCCAAAGGTGGTACGAGCCTGATTATCGCAAGTGGAAGGACCAGGAAGAGGAAATTCTCAGCGACATCGAGCCTATCGTATTCCTCGCCAAAGAGATTCTCCACTCCAATAGGTATGTAGATGGGGAGCGATTGACATCTGAGGACGAGAGAATCGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGCATGTGGACTTGAATCCATTATGGTTGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTATAAGGACCGATGGTGGATGGATCGACTTCTCATATCAAAAGTGTCTTCGGGCATATATCCGAAATAAATACCCTTCATATGCCGAGCGGTTTATTCAAGAACATTTCAAACGTGGTAGTTGATGAATTTGTGCTAGCCTTGATGCTGACATGTGGGTATTTGTTTTGGTTAAGAGTAATGTATGAATGATTAAATGTTTTCTTCATGGTTTGGTGGCCTATATGAAGGCAAGATGTACAGATTGTCAATGCAGTAGATATCATGTCATAGACGCACTGCACAATTTTTGAAAATGAGAACAATAGATAATCATTGAAGTGAAAAGTGAAACTTCTCTTTGTTGACTTGCAGCTCTGTTTTGTATGTGGTTAAGATTACTGGATGTAGATTATATGATAACAGGGACATTTCTATTATCCAATCAGACTGGGAATGCAGAACAAGATTATTAATAATGTTTGAAAAGTAGCAGATGATTGAAAAGTTTAACCTGGTTTAGCCAACAAGAGCAATAGTTCGGCAGGACTAGTGTATACCTATGAACCGAAAAGTTTAACCTGGTTTATTTAATCTTCTCTACATTTCCTAGTTCCTACCATGTGGTAGATGCAGATCTTGCGTATGTTCTAAGCTTCATGATGGATCATCCAAGAGAGGAGAAATAATCAAACCTATGGCGCATGAGCAGGTTGAAGG

Coding sequence (CDS)

ATGGCTGCTTCTTTGCTGCTCAGAATCCATCCTCTCCTTCGATTTGCCCTCAGCAACCGCCGGCGATGTACCGGAATCGTGCAGCAGGCGGCTCGCCGGCCCTGCTGCACTGCGGCGGCGGCGTCTTCTCCATCGGACGGCAACTTGACATCTGCTGCTGATACTACCACTTCGGTTTTGACTTCCAGTGACTCAGCGAAGCCCCAAAGGTGGTACGAGCCTGATTATCGCAAGTGGAAGGACCAGGAAGAGGAAATTCTCAGCGACATCGAGCCTATCGTATTCCTCGCCAAAGAGATTCTCCACTCCAATAGGTATGTAGATGGGGAGCGATTGACATCTGAGGACGAGAGAATCGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGCATGTGGACTTGAATCCATTATGGTTGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTATAAGGACCGATGGTGGATGGATCGACTTCTCATATCAAAAGTGTCTTCGGGCATATATCCGAAATAAATACCCTTCATATGCCGAGCGGTTTATTCAAGAACATTTCAAACGTGGTAGTTGA

Protein sequence

MAASLLLRIHPLLRFALSNRRRCTGIVQQAARRPCCTAAAASSPSDGNLTSAADTTTSVLTSSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIQEHFKRGS

Homology

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BLAST of Sed0024824 vs. NCBI nr
Match: XP_022135338.1 (protein DCL, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 322.8 bits (826), Expect = 2.1e-84
Identity = 164/198 (82.83%), Postives = 173/198 (87.37%), Query Frame = 0


Query: 1   MAASLLLRIHPLLRFALSNRRRCTGIVQQAARRPCCTAAAASSPSDGNLTSAADTTTSVL 60
           MAASLLLR HPLLR  L +R  CTGIV Q  RR CCTA AA +P DGNLTS A+  TSVL
Sbjct: 1   MAASLLLRGHPLLRLGLRHRGLCTGIV-QVTRRSCCTATAAPTPPDGNLTS-AENITSVL 60

Query: 61  TSSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIV 120
           +SSD  K  RW EPDYRKWKDQEEE+L+DIEPI+ L KEILHSNRYVDGERLTS DERIV
Sbjct: 61  SSSDPPKYSRWDEPDYRKWKDQEEEMLNDIEPIISLTKEILHSNRYVDGERLTSVDERIV 120

Query: 121 VDRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN 180
           V+RLLAHHPHAEDKI CGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN
Sbjct: 121 VNRLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN 180

Query: 181 KYPSYAERFIQEHFKRGS 199
           KYPSYAERFI+EHFKRGS
Sbjct: 181 KYPSYAERFIREHFKRGS 196

[Close]

BLAST of Sed0024824 vs. NCBI nr
Match: XP_023536078.1 (protein DCL homolog, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.0 bits (811), Expect = 1.1e-82
Identity = 157/198 (79.29%), Postives = 173/198 (87.37%), Query Frame = 0


Query: 1   MAASLLLRIHPLLRFALSNRRRCTGIVQQAARRPCCTAAAASSPSDGNLTSAADTTTSVL 60
           MAASLLLR HPLLRF L +R  C+G+V Q  RR CCTA AAS+P DG+LTS A+ T SV 
Sbjct: 1   MAASLLLRGHPLLRFGLWHRGLCSGVV-QVTRRSCCTATAASTPPDGSLTS-AENTASVS 60

Query: 61  TSSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIV 120
           ++S   K QRW EPDYRKWKDQE+EILSD+EP++ L KEI+HSNRYVDGERLTSEDERIV
Sbjct: 61  SASQPTKYQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIV 120

Query: 121 VDRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN 180
           VDRLLAHHPHAEDKI CGLE IMVDRHPQFRHSRCLFV+RTDGGWIDFSYQKCLRAYIR+
Sbjct: 121 VDRLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRS 180

Query: 181 KYPSYAERFIQEHFKRGS 199
           KYPSYAE FI+EHFKRGS
Sbjct: 181 KYPSYAEMFIREHFKRGS 196

[Close]

BLAST of Sed0024824 vs. NCBI nr
Match: XP_022977112.1 (protein DCL homolog, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 316.6 bits (810), Expect = 1.5e-82
Identity = 158/198 (79.80%), Postives = 174/198 (87.88%), Query Frame = 0


Query: 1   MAASLLLRIHPLLRFALSNRRRCTGIVQQAARRPCCTAAAASSPSDGNLTSAADTTTSVL 60
           MAASLLLR HPLLRF L +R  C+G+V Q  RR CCTA AAS+P DG+LTS A+ T SV 
Sbjct: 1   MAASLLLRGHPLLRFGLWHRGLCSGVV-QVTRRSCCTATAASTPPDGSLTS-AENTASVS 60

Query: 61  TSSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIV 120
           ++S S K QRW EPDYRKWKDQE+EILSD+EP++ L KEILHSNRYVDGERLTSEDERIV
Sbjct: 61  SASQSTKYQRWCEPDYRKWKDQEDEILSDVEPVMSLTKEILHSNRYVDGERLTSEDERIV 120

Query: 121 VDRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN 180
           VDRLLAHHPHAEDKI CGLE IMVDRHPQFR+SRCLFV+RTDGGWIDFSYQKCLRAYIR+
Sbjct: 121 VDRLLAHHPHAEDKIGCGLEFIMVDRHPQFRYSRCLFVVRTDGGWIDFSYQKCLRAYIRS 180

Query: 181 KYPSYAERFIQEHFKRGS 199
           KYPSYAE FI+EHFKRGS
Sbjct: 181 KYPSYAEMFIREHFKRGS 196

[Close]

BLAST of Sed0024824 vs. NCBI nr
Match: KAG7024277.1 (Protein DCL-like, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 313.2 bits (801), Expect = 1.7e-81
Identity = 156/198 (78.79%), Postives = 172/198 (86.87%), Query Frame = 0


Query: 1   MAASLLLRIHPLLRFALSNRRRCTGIVQQAARRPCCTAAAASSPSDGNLTSAADTTTSVL 60
           MAASLLLR HPLLRF L +R  C+G+V Q  RR C TA AAS+P DG+LTS A+ T SV 
Sbjct: 1   MAASLLLRGHPLLRFGLCHRGLCSGVV-QVTRRSCFTATAASTPPDGSLTS-AENTASVS 60

Query: 61  TSSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIV 120
           ++S   K QRW EPDYRKWKDQE+EILSD+EP++ L KEI+HSNRYVDGERLTSEDERIV
Sbjct: 61  SASQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIV 120

Query: 121 VDRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN 180
           VDRLLAHHPHAEDKI CGLE IMVDRHPQFRHSRCLFV+RTDGGWIDFSYQKCLRAYIR+
Sbjct: 121 VDRLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRS 180

Query: 181 KYPSYAERFIQEHFKRGS 199
           KYPSYAE FI+EHFKRGS
Sbjct: 181 KYPSYAEMFIREHFKRGS 196

[Close]

BLAST of Sed0024824 vs. NCBI nr
Match: XP_008452601.1 (PREDICTED: protein DCL, chloroplastic [Cucumis melo])

HSP 1 Score: 312.4 bits (799), Expect = 2.8e-81
Identity = 155/198 (78.28%), Postives = 168/198 (84.85%), Query Frame = 0


Query: 1   MAASLLLRIHPLLRFALSNRRRCTGIVQQAARRPCCTAAAASSPSDGNLTSAADTTTSVL 60
           MAAS L R HPLLR  L  R  CTG+V Q  RR CC+A  AS+PSDG+LT A D  TS++
Sbjct: 1   MAASFLFRGHPLLRLGLKRRGLCTGVV-QVTRRSCCSATVASTPSDGDLT-AGDNATSLV 60

Query: 61  TSSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIV 120
           +SS+  K QRW EPDYRKWK+QEEEIL DIEPI+FL KEILHS+RY DGERLT EDER V
Sbjct: 61  SSSEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTV 120

Query: 121 VDRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN 180
           VDRLLAHHPHAEDKI CGLESIMVDRHPQFRHSRC FVIRTDGGWIDFSYQKCLRAYIRN
Sbjct: 121 VDRLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRN 180

Query: 181 KYPSYAERFIQEHFKRGS 199
           KYPS+AERFI+EHFKRGS
Sbjct: 181 KYPSFAERFIREHFKRGS 196

[Close]

BLAST of Sed0024824 vs. ExPASy Swiss-Prot
Match: Q9C642 (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.8e-28
Identity = 56/135 (41.48%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 62  SSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIVV 121
           SS+  + +     +  ++ D E++IL    P+V   + ILHS +Y + +RL+ E ER ++
Sbjct: 80  SSEEEEEEEEENSEGDEFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTII 139

Query: 122 DRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNK 181
           + LL +HP  E KI CG++ IMV  HP F  SRC+F++R DG  +DFSY KC++  I+ K
Sbjct: 140 EMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKK 199

Query: 182 YPSYAERFIQEHFKR 197
           YP YA+ FI  HF++
Sbjct: 200 YPLYADSFILRHFRK 214

[Close]

BLAST of Sed0024824 vs. ExPASy Swiss-Prot
Match: Q42463 (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.8e-28
Identity = 55/122 (45.08%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 75  DYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDK 134
           D   W D E++IL D  P+V   + ILHS +Y  G+RL+ + +R ++ RLL +HP  + K
Sbjct: 98  DGEGWVDWEDQILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKK 157

Query: 135 IACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIQEHF 194
           I  G++ I V  HP F +SRCLF++R DG  +DFSY KC++  IR  YP YA+ FI  HF
Sbjct: 158 IGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHF 217

Query: 195 KR 197
           ++
Sbjct: 218 RK 219

[Close]

BLAST of Sed0024824 vs. ExPASy Swiss-Prot
Match: Q5D869 (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.5e-24
Identity = 48/115 (41.74%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 82   QEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIACGLES 141
            +E+E+LSD+EP++   ++I+H + Y DG+ ++ +D+  V++++L  HP  E K+  G++ 
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDF 1794

Query: 142  IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIQEHFKR 197
            I VD+H  F  SRC FV+ TDG   DFSY+K L  Y+  KYP  AE FI ++F +
Sbjct: 1795 ITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849

[Close]

BLAST of Sed0024824 vs. ExPASy Swiss-Prot
Match: Q9LQ02 (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.5e-05
Identity = 36/110 (32.73%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 89   DIEPIVFLAKEILHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIACGLESIMVDRHP 148
            +IE +    K ILHS  Y   E L   DE + V  +L  HP++ +KI  G++ I V +  
Sbjct: 1338 NIELLSQSLKRILHS--YEINELLNERDEGL-VKMVLQLHPNSVEKIGPGVKGIRVAK-S 1397

Query: 149  QFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIQEHFKRGS 199
            +   S C  V+R DG + DFSY KC+    +   P     +  ++ K G+
Sbjct: 1398 KHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443

[Close]

BLAST of Sed0024824 vs. ExPASy TrEMBL
Match: A0A6J1C4J4 (protein DCL, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007322 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 1.0e-84
Identity = 164/198 (82.83%), Postives = 173/198 (87.37%), Query Frame = 0


Query: 1   MAASLLLRIHPLLRFALSNRRRCTGIVQQAARRPCCTAAAASSPSDGNLTSAADTTTSVL 60
           MAASLLLR HPLLR  L +R  CTGIV Q  RR CCTA AA +P DGNLTS A+  TSVL
Sbjct: 1   MAASLLLRGHPLLRLGLRHRGLCTGIV-QVTRRSCCTATAAPTPPDGNLTS-AENITSVL 60

Query: 61  TSSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIV 120
           +SSD  K  RW EPDYRKWKDQEEE+L+DIEPI+ L KEILHSNRYVDGERLTS DERIV
Sbjct: 61  SSSDPPKYSRWDEPDYRKWKDQEEEMLNDIEPIISLTKEILHSNRYVDGERLTSVDERIV 120

Query: 121 VDRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN 180
           V+RLLAHHPHAEDKI CGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN
Sbjct: 121 VNRLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN 180

Query: 181 KYPSYAERFIQEHFKRGS 199
           KYPSYAERFI+EHFKRGS
Sbjct: 181 KYPSYAERFIREHFKRGS 196

[Close]

BLAST of Sed0024824 vs. ExPASy TrEMBL
Match: A0A6J1IHJ1 (protein DCL homolog, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477278 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 7.3e-83
Identity = 158/198 (79.80%), Postives = 174/198 (87.88%), Query Frame = 0


Query: 1   MAASLLLRIHPLLRFALSNRRRCTGIVQQAARRPCCTAAAASSPSDGNLTSAADTTTSVL 60
           MAASLLLR HPLLRF L +R  C+G+V Q  RR CCTA AAS+P DG+LTS A+ T SV 
Sbjct: 1   MAASLLLRGHPLLRFGLWHRGLCSGVV-QVTRRSCCTATAASTPPDGSLTS-AENTASVS 60

Query: 61  TSSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIV 120
           ++S S K QRW EPDYRKWKDQE+EILSD+EP++ L KEILHSNRYVDGERLTSEDERIV
Sbjct: 61  SASQSTKYQRWCEPDYRKWKDQEDEILSDVEPVMSLTKEILHSNRYVDGERLTSEDERIV 120

Query: 121 VDRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN 180
           VDRLLAHHPHAEDKI CGLE IMVDRHPQFR+SRCLFV+RTDGGWIDFSYQKCLRAYIR+
Sbjct: 121 VDRLLAHHPHAEDKIGCGLEFIMVDRHPQFRYSRCLFVVRTDGGWIDFSYQKCLRAYIRS 180

Query: 181 KYPSYAERFIQEHFKRGS 199
           KYPSYAE FI+EHFKRGS
Sbjct: 181 KYPSYAEMFIREHFKRGS 196

[Close]

BLAST of Sed0024824 vs. ExPASy TrEMBL
Match: A0A1S3BU88 (protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493574 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.4e-81
Identity = 155/198 (78.28%), Postives = 168/198 (84.85%), Query Frame = 0


Query: 1   MAASLLLRIHPLLRFALSNRRRCTGIVQQAARRPCCTAAAASSPSDGNLTSAADTTTSVL 60
           MAAS L R HPLLR  L  R  CTG+V Q  RR CC+A  AS+PSDG+LT A D  TS++
Sbjct: 1   MAASFLFRGHPLLRLGLKRRGLCTGVV-QVTRRSCCSATVASTPSDGDLT-AGDNATSLV 60

Query: 61  TSSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIV 120
           +SS+  K QRW EPDYRKWK+QEEEIL DIEPI+FL KEILHS+RY DGERLT EDER V
Sbjct: 61  SSSEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTV 120

Query: 121 VDRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN 180
           VDRLLAHHPHAEDKI CGLESIMVDRHPQFRHSRC FVIRTDGGWIDFSYQKCLRAYIRN
Sbjct: 121 VDRLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRN 180

Query: 181 KYPSYAERFIQEHFKRGS 199
           KYPS+AERFI+EHFKRGS
Sbjct: 181 KYPSFAERFIREHFKRGS 196

[Close]

BLAST of Sed0024824 vs. ExPASy TrEMBL
Match: A0A6J1FET0 (protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443290 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.8e-81
Identity = 156/198 (78.79%), Postives = 171/198 (86.36%), Query Frame = 0


Query: 1   MAASLLLRIHPLLRFALSNRRRCTGIVQQAARRPCCTAAAASSPSDGNLTSAADTTTSVL 60
           MAASLLLR HPLLRF L +R  C+G+V Q  RR C TA AAS+P DG+LTS A+ T SV 
Sbjct: 1   MAASLLLRGHPLLRFGLCHRGLCSGVV-QVTRRSCFTATAASTPPDGSLTS-AENTASVS 60

Query: 61  TSSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIV 120
            +S   K QRW EPDYRKWKDQE+EILSD+EP++ L KEI+HSNRYVDGERLTSEDERIV
Sbjct: 61  GASQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIV 120

Query: 121 VDRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN 180
           VDRLLAHHPHAEDKI CGLE IMVDRHPQFRHSRCLFV+RTDGGWIDFSYQKCLRAYIR+
Sbjct: 121 VDRLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRS 180

Query: 181 KYPSYAERFIQEHFKRGS 199
           KYPSYAE FI+EHFKRGS
Sbjct: 181 KYPSYAEMFIREHFKRGS 196

[Close]

BLAST of Sed0024824 vs. ExPASy TrEMBL
Match: A0A6J1FNQ4 (protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445919 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.3e-81
Identity = 157/198 (79.29%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MAASLLLRIHPLLRFALSNRRRCTGIVQQAARRPCCTAAAASSPSDGNLTSAADTTTSVL 60
           M ASLLLR HPL+R  L NR  C GIV Q  RR CCTA  AS+P  G L S+A+ TTSVL
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCAGIV-QVTRRSCCTAVPASTPPGGGL-SSAENTTSVL 60

Query: 61  TSSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIV 120
           +++D  K QRW EP YRKWK+QEEEILSDI+PI+ L KEILHSNRYVDGERLT EDE+IV
Sbjct: 61  SATDPPKYQRWNEPGYRKWKNQEEEILSDIDPIISLTKEILHSNRYVDGERLTFEDEKIV 120

Query: 121 VDRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN 180
           VDRLLAHHPHAEDKI CGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN
Sbjct: 121 VDRLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRN 180

Query: 181 KYPSYAERFIQEHFKRGS 199
           KYP YAERFI+EHFKRGS
Sbjct: 181 KYPLYAERFIREHFKRGS 196

[Close]

BLAST of Sed0024824 vs. TAIR 10
Match: AT3G46630.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 229.6 bits (584), Expect = 2.2e-60
Identity = 123/211 (58.29%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 1   MAASLLLRIHPLLRFALSNRRRCTGIVQ----QAARRPCCTAA---------AASSPSDG 60
           M + LLLR  PLLR    N R   GIV        RR  C+ A          + SP +G
Sbjct: 1   MTSLLLLRTLPLLRNGFLNHRHQVGIVAGGILSHRRRLLCSLADRPQFYENNDSVSPVEG 60

Query: 61  NLTSAADTTTSVLTSSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYV 120
           +  +A + T+ V+ +S      R+ +PDYRKWK+ E EIL DIEPI  LAKEILHS+RY+
Sbjct: 61  SGAAAMNVTSPVVDNS-----WRYEDPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYL 120

Query: 121 DGERLTSEDERIVVDRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWID 180
           DGERL  EDE+IV+++LL +HP+++DKI CGL+ IMVDRHPQFRHSRCLFV+RTDGGWID
Sbjct: 121 DGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWID 180

Query: 181 FSYQKCLRAYIRNKYPSYAERFIQEHFKRGS 199
           FSYQKCLRAY+R+KYPS+AERFI+EHFKR S
Sbjct: 181 FSYQKCLRAYVRDKYPSHAERFIREHFKRAS 206

[Close]

BLAST of Sed0024824 vs. TAIR 10
Match: AT1G45230.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-29
Identity = 56/135 (41.48%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 62  SSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIVV 121
           SS+  + +     +  ++ D E++IL    P+V   + ILHS +Y + +RL+ E ER ++
Sbjct: 80  SSEEEEEEEEENSEGDEFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTII 139

Query: 122 DRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNK 181
           + LL +HP  E KI CG++ IMV  HP F  SRC+F++R DG  +DFSY KC++  I+ K
Sbjct: 140 EMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKK 199

Query: 182 YPSYAERFIQEHFKR 197
           YP YA+ FI  HF++
Sbjct: 200 YPLYADSFILRHFRK 214

[Close]

BLAST of Sed0024824 vs. TAIR 10
Match: AT1G45230.2 (Protein of unknown function (DUF3223) )

HSP 1 Score: 125.2 bits (313), Expect = 6.0e-29
Identity = 56/135 (41.48%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 62  SSDSAKPQRWYEPDYRKWKDQEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIVV 121
           SS+  + +     +  ++ D E++IL    P+V   + ILHS +Y + +RL+ E ER ++
Sbjct: 80  SSEEEEEEEEENSEGDEFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTII 139

Query: 122 DRLLAHHPHAEDKIACGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNK 181
           + LL +HP  E KI CG++ IMV  HP F  SRC+F++R DG  +DFSY KC++  I+ K
Sbjct: 140 EMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKK 199

Query: 182 YPSYAERFIQEHFKR 197
           YP YA+ FI  HF++
Sbjct: 200 YPLYADSFILRHFRK 214

[Close]

BLAST of Sed0024824 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-25
Identity = 48/115 (41.74%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 82   QEEEILSDIEPIVFLAKEILHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIACGLES 141
            +E+E+LSD+EP++   ++I+H + Y DG+ ++ +D+  V++++L  HP  E K+  G++ 
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDF 1794

Query: 142  IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIQEHFKR 197
            I VD+H  F  SRC FV+ TDG   DFSY+K L  Y+  KYP  AE FI ++F +
Sbjct: 1795 ITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849

[Close]

BLAST of Sed0024824 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-06
Identity = 36/110 (32.73%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 89   DIEPIVFLAKEILHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIACGLESIMVDRHP 148
            +IE +    K ILHS  Y   E L   DE + V  +L  HP++ +KI  G++ I V +  
Sbjct: 1338 NIELLSQSLKRILHS--YEINELLNERDEGL-VKMVLQLHPNSVEKIGPGVKGIRVAK-S 1397

Query: 149  QFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIQEHFKRGS 199
            +   S C  V+R DG + DFSY KC+    +   P     +  ++ K G+
Sbjct: 1398 KHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443

The following BLAST results are available for this feature:

BLAST of Sed0024824 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135338.1	2.1e-84	82.83	protein DCL, chloroplastic isoform X1 [Momordica charantia]	[more]
XP_023536078.1	1.1e-82	79.29	protein DCL homolog, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022977112.1	1.5e-82	79.80	protein DCL homolog, chloroplastic-like [Cucurbita maxima]	[more]
KAG7024277.1	1.7e-81	78.79	Protein DCL-like, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008452601.1	2.8e-81	78.28	PREDICTED: protein DCL, chloroplastic [Cucumis melo]	[more]

BLAST of Sed0024824 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C642	3.8e-28	41.48	Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 S...	[more]
Q42463	3.8e-28	45.08	Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1	[more]
Q5D869	2.5e-24	41.74	DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1...	[more]
Q9LQ02	1.5e-05	32.73	DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD...	[more]

BLAST of Sed0024824 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4J4	1.0e-84	82.83	protein DCL, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A6J1IHJ1	7.3e-83	79.80	protein DCL homolog, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477...	[more]
A0A1S3BU88	1.4e-81	78.28	protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493574 PE=4 SV=1	[more]
A0A6J1FET0	1.8e-81	78.79	protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1FNQ4	2.3e-81	79.29	protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Sed0024824 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46630.1	2.2e-60	58.29	Protein of unknown function (DUF3223)	[more]
AT1G45230.1	2.7e-29	41.48	Protein of unknown function (DUF3223)	[more]
AT1G45230.2	6.0e-29	41.48	Protein of unknown function (DUF3223)	[more]
AT2G40030.1	1.8e-25	41.74	nuclear RNA polymerase D1B	[more]
AT1G63020.1	1.1e-06	32.73	nuclear RNA polymerase D1A	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.40		coord: 88..180 e-value: 1.3E-23 score: 85.3
None	No IPR available	PFAM	PF11523	DUF3223	coord: 98..174 e-value: 9.3E-28 score: 96.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..60
None	No IPR available	PANTHER	PTHR33415:SF4	DCL PROTEIN (DUF3223)	coord: 1..197
IPR044673	Protein DCL-like	PANTHER	PTHR33415	FAMILY NOT NAMED	coord: 1..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024824.1	Sed0024824.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding