Sed0024734 (gene) Chayote v1

Overview


Name	Sed0024734
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA polymerase epsilon subunit C
Location	LG05: 39699989 .. 39706966 (+)
RNA-Seq Expression	Sed0024734
Synteny	Sed0024734

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCCACCGAATCGGCCCAACATAGGGCCCAAAAAGGCAAAGTCACAGTCAAAACCGTCACGAAAAGAACCCAAACTCCCCGAATTTGTTTACAATGGCTTCGTCCAGAAAATGTAGTACTGCAACCAAGGGAAAAGAAGCGGGAACCTCAAAACCAGCAACCAAAACCCAAACCCAAAACAACGCCACAAAATCCGACGACGACGACGATTCCAAGAAGAAGACGACGAAGAAGATCAGCAGCAACAAGTTCGCCAACAATGGCTCCGTGAAGGCGGAGGACGAGGCCGATGAAGGCAGAGCCGAAACCACCAGTAAAAAACCCAAAACCTCGAAATCGGAGGCAGTCAAACGGAACCATGTGGAGAAAGAAGAGAATGGCTATGCCGAAGAAGAAGATGAAGACGCACAGGAGAAGATTTGTAAATTTCCTATGCATCGGATCAAGAAAATCATGAGGGACGAAAATTCTGATTTGCGCATAACTCAGGAAGCTCTATTTCTCGTCAACAGAGCTTCGGTAAGCCCTAACCACTACCAAACACGCAAGCACGCACCTATTATTGTTTGATTTAGCTCGATTGAAGAATTAGGTATTTGTTTCTTAAATTGATTTTTGCCGTGTCTGCACTCTTCGTAATTGTTTCAGGAGATGTTTCTTCTGCAATTTTGCAAAGATGCGTATGCTTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAACATCTATGTAATGTGTCTCTTTCTTTTCTAACGCTGCAGTGTATTTTCATTTGTTGTTCTCTTGCATGGATTATCACTGTTTTACCTTTACTTTTCTGGTCGGTGTTTGATCTAAAAAGAAAGTTGGAGCTGTAAATTATATCATAGTATCTTTAGACTTTAATATCAACTATGCATTCGAAAAATTGTAAAACTTGGACCTGAAATAGTTGAGGGAATTAAAATTCCACTAGCACACGCCCTTCATTATATATATATTTTTTAATTATGTAGCATGCCTGAGCTTTAACTTTTAATGAACTGCAATGTTTACAATTTATGTTCCTGAGGAGGTCATAGTTTAACATGGATTGCGGACCTTAGATTTAGGTTTCTCCAATTTCTTGGTTAAGGGATTTGAATTGTTAGCCTCTATCTTTCATGCTATTGTGTTGATGAATTACTGACTTGAATCATTAGTGTATTGCTTTGGGGTTACAAAGAGAATATTTATAGTGACATGGGAGTTTTAATAAATCATATCACGAAACCACATTATGTCTGGCTTGATGATTTGCCAACCCAAATTATGTTATGAAACCATATATACGTGGAGGAAGAAGTAATAACTAAAGGAAGCCAAAATGAGTTTGCTTAGCACTTAATGCATGCATCCATACTTCTTCTAATAGTTCATAGGTTCAAATCCTCCGCACCAGCTATGGACACTATAGAATATCCTCGATCATCATCAATAGAGATGACTTACATGGTCAAACACTAATAAAAAATTTAGGGGAAACCGAGTGAAACTCATAGAGACTACAAAGGACAGAACCCTCTTTCTTCAATGGCTTTTACAAGCTTCCAACCACTCTGAACGTATCTCTCAACCACAAATACTTCACACAGGCCAGGATCAACGACTATACTCTTTGGGTGGAGAAGACTTGCAACCGTAAGGTAAGGGGTATCTTGCGGAAATCACCAAGATAAACACCGACAGAGGCCTCAATAAGTTGATCATTTGGATTGGAGATAATATATGGGGCTGGTTCATTTTTTTTACGTTACTACAAGGGTCTAAAATTCCCCAACTACCATACAACATAATTTATGCACCATGCCACTTGTTTAAGCTGAGAAGAGGCAGTTGTACCAAAGATTTATCGCAGCCATTAATGAGCTTAAAGCCATTAATGAACACAGCCTTGAAGCCCCATCTAAAACACAATAGCATTAAAGGCTTGTACAAGAATCCACAGACAGGAGACAAAATAGGACACCAAAAAGACCAATTAAGTTTATCATCCCAGGGCCAACTACGGAAAGACTAAAGGTACTTTTTCTCCTCCCCTGCTACAAAAAATGTATTTACACTTCTCTTATCCTCTACAAAAATGCATCCACGATAGTTGGGAACTTGGGATAAGATTCTAGAGAGCATTCTTCAATCTGCACTCACCTGCAAGCTCTCCCCTTTTATGAATCCCAAAGCCCTCTATTTTGGGGAAAAGAAAAGCCTCGATTAGATGGTAAAGGATTTTTCCACTTGGAGATTTTTGAACTGTTTATCAACCCCAAACCATGGGATGGAAACAACTCCATTATCAATCTTAAGGTGGTATCTTATGGAGGATGGATCAAGTTACAGAACCTCCCTTTTGATAAATGAAACGAACAGACCTTCAAGTATATTGTTCAAGCTTGATGTGGTTTCTTAGAAGTAGCACATAAAATTCTTACAAGAGAGGATTTGATGGAAGCCTCTATAGAAGTAACTTTGAATTAGAATTCTGATCACCACTGTGACAAATTTGAAATTTTTTATCAAACCAGTCTATATTACTAGAATTCATGAGGAATGTCTGAAATTTCATTTACTTTTTTTTATTTTTTATTTTTTTTGAAATAAGGGTAACCGCGCCCGCACCTAGGCCAAGCACCGGATATATCGAAGGAGTAATGTCACAAATGAGTCTCAAATTTGGATCTTAAGGGTAAGACCCTAATAATCTTAACAATGCACAATAGAACTAATATCGAAATGGTGATAAACAACGAACACAAGAACACTATATTGATAATAGATAAATGTTACAATACCGTACCCTTAACCTTTCGAGAGGGCCAAGTCTCTCCCAAGTCCCAATAGCCTTTCGAGAGAGCTACATTCTCCCACCTTGTTGAACAAGACAACAAGACAATACCAAAATATTTTCCTTCCTTACAAAAGACCCTAAGACTCCTATTTATACTAAAACCCTTACATGCTAATTACTATTCTAGCCTTACATATAATATACCCATCCTACCCTTAGTACTCTATCACATACCCTCAAAACCCAAGTCTTCAACCATTGCGCCACCCCTTGGGGACCTGAAATTTCCTTTATTACAACATCCTTCTCAAAAAGTATCCTTGGTCCTATTCATTAAGAAGAGCTACATGAGCTTTCTCTTTTGCAAGCTTAAATTGTCATTGTACAATCGATGGTCCCACCCAAATAGAGTCATGCTTTCATCCATCCATACCATTAATTTTCAGCCATCTGTCTCGAGGGTCTGTTGTTTTTTATCGTTCCTCTAACACAGTAAAAAGGTGAGATGTGATGGATCAACATTAACCAATGAACATTGCGTTAACCCAAGTATCTTAGACCGGTCCTCTAACCAAACTTCAACTATTAACTAACCCTCAGGCCCCACTGCTCCATTAACCAAAGCACCCAATCCATCTTACATACATTCTTTCCATCATTCCTTCTCCCAAGTCTCAAGACATTCTCTTTTCCCCTTAAATTTCTATTCACCCTTGGATATCTCTCACTGAGCCTGCTTCTTTTCTCCATTAGCTATTACTATTGAGAAGAAAAATGTTTTTTTCACTGTGGGAACCAAAGCCAAGCTACCACTTCTTTCTCCAAAATACTTTACATTGAACTAGATTGCCTCTCTGGCCCTTTTCTTTCCATTATCATTTCTCCCTCATCCCCCGCTTCTCATACTATGTAAGACACTGATCTCTACTACTCTAAAAGGCAATTTACCTTCAAATTGGATCCATCCACCCACCTGGAGGTGGTAATCTCTTGGCTTCATACTCTAGGCTTAGCCTCTTAAGCATTTCGTCTCTGCCTACTTAACTCACCAAGCAGATGAAGGAGGTAGTAAGATAAGCAAACTTTATAGGGAGATTACAATACTTCCACCTTTTTTTTTTTTTTGAGATTACAACAATTGAGGATGGAGGATTCGAAACCATGACCTCTTGGTATACACTAATGTTGTTCAACAACCGCTCTTGTTGGCAATATTTCCACTTCTATTAATTGTGAAATTGATATGTCCCCAAGGGGTGGCATAGTGATTGAAGACTTGAGTTTTGAAGGTATGTTCCCTTTATGGTCCCAAATTCGAGACTCACCTGTGGCTGTGACATTACTCCTTCGATGTCTCCCGGTGCCTGGCCTAGGGACTGGCGTGATTACCCTTGTTTCAAAAAAAAAAAATTAGAAATTGATATGGTTGAAGGTTTACAAGAAAGGAAGAATCAACCTATAGATATTTATCTCCTAAATGTTGGAGACATCAGATGCAAAGACGAGGGTTCTTTAAGGAATATATTCTCAAGATCAAGTGATCAACCACTCTTTATCTAATGATGGAATACAGTTGCCTATGGACGGGCATGGTTACCCCGAGTATAGTGAAGAGAAGCTCTGATTTCCCGGTGTCCAAAAAAAATAAAAATAATGTAACACCGTTCAGCTTTCCAAGGAAGGGGCCTTGGTATTTTCTCTATGCAACACAAGAATTTGGCTCTTCTTGCTGAATGGATTTGGAGATATGACAAGGATATTAATGCTTCATTGAAAAAAGTCATTGCTAAATATGGCACTTCCCAAGGCCAGCATAGGCTAGGAGGCCTCAACATTGCAGATCTAAGGGCCCCTAGAAACTAGAAAGCCATATTGAAGTAATCTGCCCTCATTCTTAAAAACTCTAGATTGATGGTCAACAATGGCACCCATACTTCTTTCTGGCTAGATCCCTGGATTAACTATGATCCACTATACAAGCTGTATCCTTGTATCTATAACTTATCTAATCGGAAAGAGGCTATGGTCAACACAGTTTGGGACGAGACTTTAAACTTCTGGAATTTGAGCCTTAGAAGAAATTTGAAAGATGATGAAATTCAGGAATTGGGTGCACTGACCCACAGTTTGAGCCTTATCCCTTATAATAGTGAAGAAGACAAGATTGATCCTTGGACTTCACTGTCAAATGTCAAATCCCTATTACAGAAGCTTGCTTCTCCTAGAGTGGAAGCTGATCCCAACCTTTTTTGACATACTAAAATTCCCAAAAAGATTAGTTCTTTTTATGGGAAGATGCTCGTGGAGCCATCAACACAGGAAAAATTGCAAAAACAGATTGCCTCACCTTGCCATCTCTTGCAGTTGGTGCTCTCTTTGTCATAGAAAATCAGAGAATATATCTCACATTACGGTACACTGCCAGTTTGCTTGGGAACACATCATCCGATTCTTCAAGTGGAAGTGCCTTCAGCCACAAAGTATTCAAGAACAACTTACTATCACTCTTATGAGTCACACTTTTAAGATAGAAAAGAAGATGCTCTCGGAAAACTTCATTTGTTGGATTATATGGTTGGAGCGCACTAGACGAGTCTTAACAAATTAGGAATCATCCTACCATAATTTAAGTTGGTCTAGTGGTCAAAAGGCTCTAAAAGTTTATGGGTTCAGTCCATAGTAGCCACTTTCTTAAGAATTAATTTTCTACGAGTTTCCTTGACATCCAAATATTGTAGGGTTAGATGAGTTGTCCCGTAAGAATAGTTGAGGCGTGCATAAGTTAGCCAAGACACTTGCGGATTAAAAAAAAAAAATCTTGGTGTAGACATGGGGAAAAATAGAGTAGAGCTCTGATTTTCCGATTAAAAAAAAAAGAACATCGGTGTAAACAATCCCCTCTTTTCACTCATTATAGTCTTGATACCCTCCTCTCTCATTGGGGTGGCCTTATGTAATCTCTCAGGGGACTTCTAAATTTCATATTTCAATGAAATTATTTCTTATAAAAAAAATACCGTTAAAGAAAAGGCTAGAGGAAGTAAAGTAGTTTGATCTGATACTCGGAAGGGAATAACTAATTAGTTATCTGCTTTTCTTCCATGGGTAAATGCCAATTTGGTGGTAAAGGAGACAGATAGGGAGAAAATTGGAGAAGAAGATGTTTGGGAATTGAAAACAGGGAGAGGGCATTGTGAGAATCTAGTATGGAATTTCAAACTATCTTGGAGGGGCCTAGTGATCAAGAGGGTTTCAGAGAACTAAGAGATGAAGGGTTCAATCCATGGTGGCCACCTATCTAAAAATTAATTTTCTACACATTTTCTTGATATCCAAATATTGTAGGGTCAGGTGATATGTATTGTGACAATAGCCGAGGTGTGTCAAGTTGGCTCGGACAGTCACCGATATATAAAAAAAATGTATGAAATTTCTATTTAGATGTGGAGAGAGAATAGGAAGACTTCTGATTCTCTTCCCTTAGTTGTGTTTTGTTATCTACTAAAAGAAAGTGATTTCAAGTATTTATCATCTGGCTAGGCGATTATATGAAAATGATGCTGAAATTTTGATAAGCCTTTCACATTATTATTTTTTTTTGTTTAATCTTTTTTTCGTATCATCTGCCATGGACTCCAATATGACTTGAAGGAATTGAAACATTTATGAAGATCTATGCATGTTTATATGATCTCTTTGGATAATGGTCACCTAATTCAGAGAATAGTCTCTACATGACCAATCACCAAAAGCATAGTTTTTAACTTTCGGATATAGATTTTGTTTGTTGTAGTAATAGTAAGATTCTGTTGTTTTGTTGCAGCATCAGTAGTCAGCAAAAGGAAGAGATATGACTTTCTTTCAGGTACACACTTATGCTGTATTATTATTTTACGCATATCTCATAAAAAACATCACTATTTTGTTTTTGGTGTGTAGATTTCGTACCAGAGAAGTTAAAATTGGAAGATGCACTAAAGGAGAGAAGCATGGCAGAGTCGGAAAAAGGCCAGCCTTCTTGATATGTTTTTATTCTACACTTCATTTTTCTCCTCAGGTCAATGGGAACACCCACATTTCTTCTGTACTTTATTAATGACATCTCGGATCTAACAGGAATTCGTGTAGTTTATTATTCCCATCGCGGAACTAACAAAAATTATAACATAA

mRNA sequence

GGGCCACCGAATCGGCCCAACATAGGGCCCAAAAAGGCAAAGTCACAGTCAAAACCGTCACGAAAAGAACCCAAACTCCCCGAATTTGTTTACAATGGCTTCGTCCAGAAAATGTAGTACTGCAACCAAGGGAAAAGAAGCGGGAACCTCAAAACCAGCAACCAAAACCCAAACCCAAAACAACGCCACAAAATCCGACGACGACGACGATTCCAAGAAGAAGACGACGAAGAAGATCAGCAGCAACAAGTTCGCCAACAATGGCTCCGTGAAGGCGGAGGACGAGGCCGATGAAGGCAGAGCCGAAACCACCAGTAAAAAACCCAAAACCTCGAAATCGGAGGCAGTCAAACGGAACCATGTGGAGAAAGAAGAGAATGGCTATGCCGAAGAAGAAGATGAAGACGCACAGGAGAAGATTTGTAAATTTCCTATGCATCGGATCAAGAAAATCATGAGGGACGAAAATTCTGATTTGCGCATAACTCAGGAAGCTCTATTTCTCGTCAACAGAGCTTCGGAGATGTTTCTTCTGCAATTTTGCAAAGATGCGTATGCTTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAACATCTATCATCAGTAGTCAGCAAAAGGAAGAGATATGACTTTCTTTCAGATTTCGTACCAGAGAAGTTAAAATTGGAAGATGCACTAAAGGAGAGAAGCATGGCAGAGTCGGAAAAAGGCCAGCCTTCTTGATATGTTTTTATTCTACACTTCATTTTTCTCCTCAGGTCAATGGGAACACCCACATTTCTTCTGTACTTTATTAATGACATCTCGGATCTAACAGGAATTCGTGTAGTTTATTATTCCCATCGCGGAACTAACAAAAATTATAACATAA

Coding sequence (CDS)

ATGGCTTCGTCCAGAAAATGTAGTACTGCAACCAAGGGAAAAGAAGCGGGAACCTCAAAACCAGCAACCAAAACCCAAACCCAAAACAACGCCACAAAATCCGACGACGACGACGATTCCAAGAAGAAGACGACGAAGAAGATCAGCAGCAACAAGTTCGCCAACAATGGCTCCGTGAAGGCGGAGGACGAGGCCGATGAAGGCAGAGCCGAAACCACCAGTAAAAAACCCAAAACCTCGAAATCGGAGGCAGTCAAACGGAACCATGTGGAGAAAGAAGAGAATGGCTATGCCGAAGAAGAAGATGAAGACGCACAGGAGAAGATTTGTAAATTTCCTATGCATCGGATCAAGAAAATCATGAGGGACGAAAATTCTGATTTGCGCATAACTCAGGAAGCTCTATTTCTCGTCAACAGAGCTTCGGAGATGTTTCTTCTGCAATTTTGCAAAGATGCGTATGCTTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAACATCTATCATCAGTAGTCAGCAAAAGGAAGAGATATGACTTTCTTTCAGATTTCGTACCAGAGAAGTTAAAATTGGAAGATGCACTAAAGGAGAGAAGCATGGCAGAGTCGGAAAAAGGCCAGCCTTCTTGA

Protein sequence

MASSRKCSTATKGKEAGTSKPATKTQTQNNATKSDDDDDSKKKTTKKISSNKFANNGSVKAEDEADEGRAETTSKKPKTSKSEAVKRNHVEKEENGYAEEEDEDAQEKICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKLEDALKERSMAESEKGQPS

Homology

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BLAST of Sed0024734 vs. NCBI nr
Match: XP_008463933.1 (PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo])

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-70
Identity = 163/223 (73.09%), Postives = 179/223 (80.27%), Query Frame = 0


Query: 1   MASSRKCSTATKGKEAGTSKPATKTQTQNNATKSDDDDDSKKKTTKKISSNKFANNGSVK 60
           MASS+K ST  KGKEAGTSKPA K +T NNA  SD +   KKK  KKIS +   NNGSVK
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISIS--TNNGSVK 60

Query: 61  ----------------AEDEADEGRAETTSKKPKTSKSEAVKRNHVEKEENGYAEEEDED 120
                            +D ADE +AETTS+K KTSKS+ VKRNH ++E+NGYAEEE+E+
Sbjct: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120

Query: 121 AQEKICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQDRKKS 180
           A+EKI KFPMHRIKKIMRDENSDLRI QEALFLVN+ASEMFL+QFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKLEDALKERSMAESEK 208
           LAYKHLSSVVSKRKRYDFLSDFVPEKLK EDALKERSMAES K
Sbjct: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 221

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BLAST of Sed0024734 vs. NCBI nr
Match: XP_038902902.1 (DNA polymerase epsilon subunit C [Benincasa hispida])

HSP 1 Score: 273.1 bits (697), Expect = 2.0e-69
Identity = 163/223 (73.09%), Postives = 176/223 (78.92%), Query Frame = 0


Query: 1   MASSRKCSTATKGKEAGTSKPATKTQTQNNATKSDDDDDSKKKTTKKISSNKFANNGSVK 60
           MASS+K ST  K KEAGTSKP  KT+T NNA KSD DD +KKK  KK  S     NGSVK
Sbjct: 44  MASSKKSSTEAKSKEAGTSKPTPKTKTHNNARKSDKDDSNKKKKKKKKIS---TINGSVK 103

Query: 61  ----------------AEDEADEGRAETTSKKPKTSKSEAVKRNHVEKEENGYAEEEDED 120
                            E +ADE RAETTS KP TSKS+ V+RNHV+KEENGYA EE+E+
Sbjct: 104 DNEALATSPPGSASASEEVDADEDRAETTSGKPNTSKSKKVQRNHVKKEENGYAAEEEEE 163

Query: 121 AQEKICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQDRKKS 180
           A+EKI KFPMHRIKKIMRDENSDLRI QEALFLVN+ASEMFL+QFCKDAYACCAQDRKKS
Sbjct: 164 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 223

Query: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKLEDALKERSMAESEK 208
           LAYKHLSSVV KRKRYDFLSDFVPEKLK EDALKER+MAES K
Sbjct: 224 LAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERNMAESGK 263

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BLAST of Sed0024734 vs. NCBI nr
Match: XP_022140741.1 (DNA polymerase epsilon subunit C [Momordica charantia])

HSP 1 Score: 265.0 bits (676), Expect = 5.5e-67
Identity = 161/230 (70.00%), Postives = 176/230 (76.52%), Query Frame = 0


Query: 1   MASSRKCSTATKGKEAGTSKPAT------KTQTQNNATKSDDDDDSKKKTTKKISSNKFA 60
           MASS+K ST  K KEAGTSK AT      KT+T +NATKSD D   K    KKIS+ K A
Sbjct: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60

Query: 61  NNGSVK--------------AEDEADEGRAETTSKKPKTSKSEAVKRNHVEKEENGYAEE 120
           NNGS +               ED+ADE R ETTS+K  +SKS+ VKRNH +KEENGY EE
Sbjct: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120

Query: 121 EDEDAQ--EKICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCA 180
           E+E+ Q  EKI KFPMHRIKKI RDENSDLRI QEALFLVN+A+EMFL+QFCKDAYACCA
Sbjct: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180

Query: 181 QDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKLEDALKERSMAESEKG 209
           QDRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLK EDALKERSMAES KG
Sbjct: 181 QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKG 230

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BLAST of Sed0024734 vs. NCBI nr
Match: XP_004149539.2 (chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 6.1e-66
Identity = 157/223 (70.40%), Postives = 171/223 (76.68%), Query Frame = 0


Query: 1   MASSRKCSTATKGKEAGTSKPATKTQTQNNATKSDDDDDSKKKTTKKISSNKFANNGSVK 60
           MASS+K ST  K KE GTSKP+ K +T NNA  SD D   KKK  KKIS +   NNGSVK
Sbjct: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60

Query: 61  AE----------------DEADEGRAETTSKKPKTSKSEAVKRNHVEKEENGYAEEEDED 120
                             D ADE +AETTS+K  TSKS+ VKRNH ++E+N YA E  E+
Sbjct: 61  DNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAAE--EE 120

Query: 121 AQEKICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQDRKKS 180
           A+EKI KFPMHRIKKIMRDENSDLRI QEALFLVN+ASEMFL+QFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKLEDALKERSMAESEK 208
           LAYKHLSSVVSKRKRYDFLSDFVPEKLK EDALKERSMAES K
Sbjct: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 221

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BLAST of Sed0024734 vs. NCBI nr
Match: XP_023534490.1 (ABC transporter F family member 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.2 bits (666), Expect = 8.0e-66
Identity = 161/231 (69.70%), Postives = 176/231 (76.19%), Query Frame = 0


Query: 1   MASSRKCSTATKGKEAGTSKPATKTQTQNNATKSDDDDDSKKKTTKKISSNKFANNGSVK 60
           MAS++K ST  K KEAGTSKPATKT    NA KSD +D  KKK  KKI SNK +NNGSVK
Sbjct: 1   MASTKKSSTEIKSKEAGTSKPATKTTKTLNARKSDKNDSKKKK--KKIYSNKHSNNGSVK 60

Query: 61  AED--------------EADEGRAETTSKKPKTSKSEAVKRNHVEKEENGYA------EE 120
            +D              +A E RAETTSKK KTSKS+  K NHV+KEENGYA      EE
Sbjct: 61  EDDAVFISAPGSASEEEDAGEERAETTSKKAKTSKSKVGKWNHVKKEENGYAEQEEEEEE 120

Query: 121 EDEDAQEKICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQD 180
           E+E+ QEKI  FPM RIKKI RDENSD RI QEALFLVN+A+EMFLLQFCKDAYACCA+D
Sbjct: 121 EEEEVQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATEMFLLQFCKDAYACCARD 180

Query: 181 RKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKLEDALKERSMAESEKGQPS 212
           RKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLK EDA+KE  MAES KG+ S
Sbjct: 181 RKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDAVKEIGMAESGKGEAS 229

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BLAST of Sed0024734 vs. ExPASy Swiss-Prot
Match: Q9V452 (Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 GN=Chrac-16 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.6e-06
Identity = 29/82 (35.37%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 113 PMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYA-CCAQDRKKSLAYKHLS 172
           P+ R++ IM+       IT E LFL+ + +E+F+      AY     Q   ++L Y+HLS
Sbjct: 21  PLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLS 80

Query: 173 SVVSKRKRYDFLSDFVPEKLKL 194
            VV+K K  +FL   VP+K+++
Sbjct: 81  QVVNKNKNLEFLLQIVPQKIRV 102

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BLAST of Sed0024734 vs. ExPASy Swiss-Prot
Match: Q9NRG0 (Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.6e-05
Identity = 32/110 (29.09%), Postives = 57/110 (51.82%), Query Frame = 0


Query: 101 EDEDAQEKICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQD 160
           +D+  ++++   P+ RI+ IM+       I QEAL L  +A+E+F+      +Y   +  
Sbjct: 8   KDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGK 67

Query: 161 RKKSLAYKHLSSVVSKRKRYDFLSDFVPEKL---KLEDALKERSMAESEK 208
            KK L Y  L++   + + + FL+D +P+K+   K    LKE    E E+
Sbjct: 68  EKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREEDEE 117

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BLAST of Sed0024734 vs. ExPASy Swiss-Prot
Match: A6QQ14 (DNA polymerase epsilon subunit 4 OS=Bos taurus OX=9913 GN=POLE4 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.2e-05
Identity = 22/76 (28.95%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 108 KICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQDRKKSLAY 167
           ++ + P+ R+K +++ +       QEA+F++ RA+E+F+    KDAY C  Q ++K+L  
Sbjct: 36  RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 95

Query: 168 KHLSSVVSKRKRYDFL 184
           + L + +     + FL
Sbjct: 96  RDLDNAIEAVDEFAFL 111

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BLAST of Sed0024734 vs. ExPASy Swiss-Prot
Match: Q9NR33 (DNA polymerase epsilon subunit 4 OS=Homo sapiens OX=9606 GN=POLE4 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 6.2e-05
Identity = 22/76 (28.95%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 108 KICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQDRKKSLAY 167
           ++ + P+ R+K +++ +       QEA+F++ RA+E+F+    KDAY C  Q ++K+L  
Sbjct: 37  RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 96

Query: 168 KHLSSVVSKRKRYDFL 184
           + L + +     + FL
Sbjct: 97  RDLDNAIEAVDEFAFL 112

[Close]

BLAST of Sed0024734 vs. ExPASy Swiss-Prot
Match: Q9CQ36 (DNA polymerase epsilon subunit 4 OS=Mus musculus OX=10090 GN=Pole4 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.2e-05
Identity = 22/76 (28.95%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 108 KICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQDRKKSLAY 167
           ++ + P+ R+K +++ +       QEA+F++ RA+E+F+    KDAY C  Q ++K+L  
Sbjct: 38  RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 97

Query: 168 KHLSSVVSKRKRYDFL 184
           + L + +     + FL
Sbjct: 98  RDLDNAIEAVDEFAFL 113

[Close]

BLAST of Sed0024734 vs. ExPASy TrEMBL
Match: A0A1S3CKU7 (DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 8.9e-71
Identity = 163/223 (73.09%), Postives = 179/223 (80.27%), Query Frame = 0


Query: 1   MASSRKCSTATKGKEAGTSKPATKTQTQNNATKSDDDDDSKKKTTKKISSNKFANNGSVK 60
           MASS+K ST  KGKEAGTSKPA K +T NNA  SD +   KKK  KKIS +   NNGSVK
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISIS--TNNGSVK 60

Query: 61  ----------------AEDEADEGRAETTSKKPKTSKSEAVKRNHVEKEENGYAEEEDED 120
                            +D ADE +AETTS+K KTSKS+ VKRNH ++E+NGYAEEE+E+
Sbjct: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120

Query: 121 AQEKICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQDRKKS 180
           A+EKI KFPMHRIKKIMRDENSDLRI QEALFLVN+ASEMFL+QFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKLEDALKERSMAESEK 208
           LAYKHLSSVVSKRKRYDFLSDFVPEKLK EDALKERSMAES K
Sbjct: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 221

[Close]

BLAST of Sed0024734 vs. ExPASy TrEMBL
Match: A0A6J1CGZ0 (DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.7e-67
Identity = 161/230 (70.00%), Postives = 176/230 (76.52%), Query Frame = 0


Query: 1   MASSRKCSTATKGKEAGTSKPAT------KTQTQNNATKSDDDDDSKKKTTKKISSNKFA 60
           MASS+K ST  K KEAGTSK AT      KT+T +NATKSD D   K    KKIS+ K A
Sbjct: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60

Query: 61  NNGSVK--------------AEDEADEGRAETTSKKPKTSKSEAVKRNHVEKEENGYAEE 120
           NNGS +               ED+ADE R ETTS+K  +SKS+ VKRNH +KEENGY EE
Sbjct: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120

Query: 121 EDEDAQ--EKICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCA 180
           E+E+ Q  EKI KFPMHRIKKI RDENSDLRI QEALFLVN+A+EMFL+QFCKDAYACCA
Sbjct: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180

Query: 181 QDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKLEDALKERSMAESEKG 209
           QDRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLK EDALKERSMAES KG
Sbjct: 181 QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKG 230

[Close]

BLAST of Sed0024734 vs. ExPASy TrEMBL
Match: A0A0A0KCQ2 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G294440 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 3.0e-66
Identity = 157/223 (70.40%), Postives = 171/223 (76.68%), Query Frame = 0


Query: 1   MASSRKCSTATKGKEAGTSKPATKTQTQNNATKSDDDDDSKKKTTKKISSNKFANNGSVK 60
           MASS+K ST  K KE GTSKP+ K +T NNA  SD D   KKK  KKIS +   NNGSVK
Sbjct: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60

Query: 61  AE----------------DEADEGRAETTSKKPKTSKSEAVKRNHVEKEENGYAEEEDED 120
                             D ADE +AETTS+K  TSKS+ VKRNH ++E+N YA E  E+
Sbjct: 61  DNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAAE--EE 120

Query: 121 AQEKICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQDRKKS 180
           A+EKI KFPMHRIKKIMRDENSDLRI QEALFLVN+ASEMFL+QFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKLEDALKERSMAESEK 208
           LAYKHLSSVVSKRKRYDFLSDFVPEKLK EDALKERSMAES K
Sbjct: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 221

[Close]

BLAST of Sed0024734 vs. ExPASy TrEMBL
Match: A0A6J1H2H8 (DNA polymerase epsilon subunit C-like OS=Cucurbita moschata OX=3662 GN=LOC111459429 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 5.0e-66
Identity = 158/225 (70.22%), Postives = 176/225 (78.22%), Query Frame = 0


Query: 1   MASSRKCSTATKGKEAGTSKPATKTQTQNNATKSDDDDDSKKKTTKKISSNKFANNGSVK 60
           MAS+ + ST  K KEAGTSKP TKT+T  NA KSD ++  KKK  KKI SNK +NNGSVK
Sbjct: 1   MASTERSSTEIKSKEAGTSKPPTKTKTL-NARKSDKNESKKKK--KKIYSNKHSNNGSVK 60

Query: 61  --------------AEDEADEGRAETTSKKPKTSKSEAVKRNHVEKEENGYAEEEDEDAQ 120
                          E++A E RAETTSKK KTSKS+  K NHV+KEENGYAE+E+E+ Q
Sbjct: 61  DDDAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYAEDEEEEVQ 120

Query: 121 EKICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQDRKKSLA 180
           EKI  FPM RIKKI RDENSD RI QEALFLVN+A+EMFLLQFCKDAYACCA+DRKKSLA
Sbjct: 121 EKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATEMFLLQFCKDAYACCARDRKKSLA 180

Query: 181 YKHLSSVVSKRKRYDFLSDFVPEKLKLEDALKERSMAESEKGQPS 212
           YKHLSSVVSKRKRYDFLSDFVPEKLK EDA+KE  MAES KG+ S
Sbjct: 181 YKHLSSVVSKRKRYDFLSDFVPEKLKFEDAVKEIGMAESGKGEAS 222

[Close]

BLAST of Sed0024734 vs. ExPASy TrEMBL
Match: A0A6J1K264 (transcriptional activator HAP5-like OS=Cucurbita maxima OX=3661 GN=LOC111491038 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 2.1e-64
Identity = 156/227 (68.72%), Postives = 175/227 (77.09%), Query Frame = 0


Query: 1   MASSRKCSTATKGKEAGTSKPATKTQTQNNATKSDDDDDSKKKTTKKISSNKFANNGSVK 60
           MAS++K +   K KEAGTSKPATKT+T  NA KSD +D  KKK  KKI SNK +NNGSVK
Sbjct: 1   MASTKKSNAEIKSKEAGTSKPATKTKTL-NARKSDKNDSKKKKKKKKIYSNKHSNNGSVK 60

Query: 61  AED--------------EADEGRAETTSKKPKTSKSEAVKRNHVEKEENGYA--EEEDED 120
            +D              +A E RAET SK+ KTSKS+  K NHV+KEENGYA  EEE+E+
Sbjct: 61  EDDAVFISAPGSASEEEDAGEDRAETRSKEAKTSKSKVGKWNHVKKEENGYAEQEEEEEE 120

Query: 121 AQEKICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQDRKKS 180
           A EKI  FPM RIKKI RDENSD RI QEALFLVN+A+EMFL+QFCKDAYACC++DRKKS
Sbjct: 121 AHEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATEMFLVQFCKDAYACCSRDRKKS 180

Query: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKLEDALKERSMAESEKGQPS 212
           LAYKHLSSVVSKRKRYDFLSDFVPEKLK EDALKE  MAES K + S
Sbjct: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKEIGMAESGKDEAS 226

[Close]

BLAST of Sed0024734 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 )

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-19
Identity = 74/201 (36.82%), Postives = 115/201 (57.21%), Query Frame = 0


Query: 8   STATKGKEAGTSKPATKTQTQNNATKSDDDDDSKKKTTKKISSNKFANNGSVKAEDEADE 67
           S     K +G SK ++ ++T+  + K +          KK    + + + S  + +EA  
Sbjct: 14  SDVVVNKASGRSKRSSGSRTKKTSNKVN-------IVKKKPEIYEISESSSSDSVEEAIR 73

Query: 68  GRAETTSKKPKTSKSEAVKRNHVEKEENGYAEEEDEDAQEKICKFPMHRIKKIMRDENSD 127
           G  E        SK    K   +  + +   EE+D  A++   KFPM+RI++IMR +NS 
Sbjct: 74  G-DEAKKSNGVVSKRGNGKSVGIPTKTSKNREEDDGGAEDAKIKFPMNRIRRIMRSDNSA 133

Query: 128 LRITQEALFLVNRASEMFLLQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFV 187
            +I Q+A+FLVN+A+EMF+ +F ++AY    +D+KK + YKHLSSVVS  +RY+FL+D V
Sbjct: 134 PQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKKKFIHYKHLSSVVSNDQRYEFLADSV 193

Query: 188 PEKLKLEDALKERSMAESEKG 209
           PEKLK E AL+E     ++ G
Sbjct: 194 PEKLKAEAALEEWERGMTDAG 206

[Close]

BLAST of Sed0024734 vs. TAIR 10
Match: AT1G56170.1 (nuclear factor Y, subunit C2 )

HSP 1 Score: 48.1 bits (113), Expect = 9.9e-06
Identity = 29/99 (29.29%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 113 PMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQDRKKSLAYKHLSS 172
           P+ RIKKIM+ +     I+ EA  +  +A EMF+L+    A+    ++++++L    +++
Sbjct: 78  PLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAA 137

Query: 173 VVSKRKRYDFLSDFVPEKLKLEDALKERSMAESEKGQPS 212
            +S+   +DFL D +P      D LKE  +  ++   PS
Sbjct: 138 AISRTDVFDFLVDIIP-----RDELKEEGLGVTKGTIPS 171

[Close]

BLAST of Sed0024734 vs. TAIR 10
Match: AT1G56170.2 (nuclear factor Y, subunit C2 )

HSP 1 Score: 48.1 bits (113), Expect = 9.9e-06
Identity = 29/99 (29.29%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 113 PMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYACCAQDRKKSLAYKHLSS 172
           P+ RIKKIM+ +     I+ EA  +  +A EMF+L+    A+    ++++++L    +++
Sbjct: 78  PLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAA 137

Query: 173 VVSKRKRYDFLSDFVPEKLKLEDALKERSMAESEKGQPS 212
            +S+   +DFL D +P      D LKE  +  ++   PS
Sbjct: 138 AISRTDVFDFLVDIIP-----RDELKEEGLGVTKGTIPS 171

[Close]

BLAST of Sed0024734 vs. TAIR 10
Match: AT5G63470.1 (nuclear factor Y, subunit C4 )

HSP 1 Score: 45.1 bits (105), Expect = 8.4e-05
Identity = 29/101 (28.71%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 97  YAEEEDEDAQE-KICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYA 156
           Y  +E E   + K  + P+ RIKKIM+ +     I+ EA  L  +A E+F+L+    ++ 
Sbjct: 63  YQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWL 122

Query: 157 CCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVP-EKLKLED 196
              ++++++L    +++ +++   +DFL D VP E++K E+
Sbjct: 123 HAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEE 163

[Close]

BLAST of Sed0024734 vs. TAIR 10
Match: AT5G63470.2 (nuclear factor Y, subunit C4 )

HSP 1 Score: 45.1 bits (105), Expect = 8.4e-05
Identity = 29/101 (28.71%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 97  YAEEEDEDAQE-KICKFPMHRIKKIMRDENSDLRITQEALFLVNRASEMFLLQFCKDAYA 156
           Y  +E E   + K  + P+ RIKKIM+ +     I+ EA  L  +A E+F+L+    ++ 
Sbjct: 63  YQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWL 122

Query: 157 CCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVP-EKLKLED 196
              ++++++L    +++ +++   +DFL D VP E++K E+
Sbjct: 123 HAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEE 163

The following BLAST results are available for this feature:

BLAST of Sed0024734 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463933.1	1.8e-70	73.09	PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo]	[more]
XP_038902902.1	2.0e-69	73.09	DNA polymerase epsilon subunit C [Benincasa hispida]	[more]
XP_022140741.1	5.5e-67	70.00	DNA polymerase epsilon subunit C [Momordica charantia]	[more]
XP_004149539.2	6.1e-66	70.40	chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus]	[more]
XP_023534490.1	8.0e-66	69.70	ABC transporter F family member 4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0024734 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9V452	5.6e-06	35.37	Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 ...	[more]
Q9NRG0	1.6e-05	29.09	Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1...	[more]
A6QQ14	6.2e-05	28.95	DNA polymerase epsilon subunit 4 OS=Bos taurus OX=9913 GN=POLE4 PE=3 SV=1	[more]
Q9NR33	6.2e-05	28.95	DNA polymerase epsilon subunit 4 OS=Homo sapiens OX=9606 GN=POLE4 PE=1 SV=2	[more]
Q9CQ36	6.2e-05	28.95	DNA polymerase epsilon subunit 4 OS=Mus musculus OX=10090 GN=Pole4 PE=1 SV=1	[more]

BLAST of Sed0024734 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKU7	8.9e-71	73.09	DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV...	[more]
A0A6J1CGZ0	2.7e-67	70.00	DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 ...	[more]
A0A0A0KCQ2	3.0e-66	70.40	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G2944...	[more]
A0A6J1H2H8	5.0e-66	70.22	DNA polymerase epsilon subunit C-like OS=Cucurbita moschata OX=3662 GN=LOC111459...	[more]
A0A6J1K264	2.1e-64	68.72	transcriptional activator HAP5-like OS=Cucurbita maxima OX=3661 GN=LOC111491038 ...	[more]

BLAST of Sed0024734 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07980.1	2.1e-19	36.82	nuclear factor Y, subunit C10	[more]
AT1G56170.1	9.9e-06	29.29	nuclear factor Y, subunit C2	[more]
AT1G56170.2	9.9e-06	29.29	nuclear factor Y, subunit C2	[more]
AT5G63470.1	8.4e-05	28.71	nuclear factor Y, subunit C4	[more]
AT5G63470.2	8.4e-05	28.71	nuclear factor Y, subunit C4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 111..174 e-value: 2.0E-16 score: 60.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 67..189 e-value: 2.0E-24 score: 88.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 112..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..46
None	No IPR available	PANTHER	PTHR10252:SF93	HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED	coord: 11..205
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 11..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024734.1	Sed0024734.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity