Sed0024686 (gene) Chayote v1

Overview


Name	Sed0024686
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG02: 50980671 .. 50984247 (+)
RNA-Seq Expression	Sed0024686
Synteny	Sed0024686

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCAAGATTGCTTTCACATCGATTGCCGCCCCATCCGTCTCTTCCCTTCTCTCCCCTTTTTCCCTTTCCCCATTTCTTCCTCCGCCGCTTTGCCGCCGCAAATCTCCTCCGTCTCCTCGTTCGATCGCCCCGCTCCGGCCGCCGTCCGCCGTCCCGTCTTACGCCAGGTTCGATCTCCTTTACTGTTTCCTTCATGCTACTGTTGTATTGCTTCAAATCTTGCTTGTTTTCTCTGATTTCTCGCCTCTAATTTCCGTTTTATGTGTTTGATTTTCGTATTTTTGTTCGTTTTGGTTCTATTTGTGGTTCTATGTATGTTTTCGATTCGTGACCTTTCTTCGTGTTTTAGGCGGCGAGGGTTTGAGGTCTTAAATCTTGAATATTATCCAGTTGGAGGTTTTAGGATGTTTGGTTTGGATTATAGAAGCTGCCTATTTGAATAGTTTGTACTAACGGTTCAATTTCGTTTAGGGTTTATACGTTTTTTATTCTGTATTGTTCGAGTTAGGTCGTGAATTTTTTTTATGATGTATTTGTCAAATTAGGGGTTTAGTTTTTGAAGTATATTTTTAGGTTTCGTGATTGTTGAGGGAAAGCAATTCTGTGTGTGTGTTTTTTAAAGCTTGTAATTGTCCCGCCCTGGATGCAATAAGATGCTCTTTTTGTAACTTTTTTTGGGGGTTTTGTGTATGTTATAAAAAATCATGCATTATTGTCCAACGTTATTTTTAAATAATCAAATTCCGTAAACGTTTTTAACTTTCAGCAGATTTTTAAAAATAGAAAATTAAAAAAAATTAATTTATTTTTTGAAAAATAGAAAGTGAAAAATGGAATCATTGGCTTGGTAATCTTTCTCTGAGAACAGGTCGATAAGAGTTCTTTATCTTTTTTATTTAATAATGTGTAACTCGTTTATCAATTCAACGTGGATTTCTTGGGAACTAAGTTAGCAAAGATTCAATTTCATTGGTCTTTATAACTGAGATTCTGAATTACTTCTCCATTTCTGTGGATGATTCTATTTTCTTTAGGTTTGAAAGATAAAGAAGGCTATCGGAATGAGCTTCTATCTACGTGACTGGAGTGCAAGAGTTGTTGAGAGAACATTAATGGACTTCGACCTAAATTGTCCGCCTCCAGATGAGTGCCACGTTCCAACTGGTCCTCACGAGGGAGCAGCACAGTACTACAATCATTACCAAGGACAAACTATGAACAATCCCGACTTTGTCGATGAGGACATTGCCATAATCTCCCCTAGGAAATTTGCTGAAGTATGTGATATTTTGGTCAGATAAAATATAATCTTGACTCTATTTAAGCCATATATTATAAGGGTATCTAACATGCTTTCCAATTTTGTAGGCCAGGAAGAATTTACGAAGAAACTATGAAAGGAACTGTGGTGTAGCCACTAGACGTAACGACAACACAGAAATTTATGGTACTCTCTCAGACTTATTGCGTTCTGTTTTTAGTCTTTAACTTTTCTATTTGTATTTGAGTTGCTGATTCTCTCTCAGATAGTATAGCTTCATTCCCATTTTACGACATTTTATGCTTCTTTGGCACTAGATTTTTTATGAGGATATACTCGCATTCGTGGACGTTCCTTACTTTTTTTCGTCTGGTGAATATTCTATATTCTCGATTTGCAAGACTTCGAATAAAATTTCAGTGCTCGTTATGATTATATTTAGTTAAGAGGAGTTTCACTATTATGAAATTAAATTTCTATGTTCTTAGCATAAGATTGTTATAAATTTTTTCCTAGCCTGACACTTGTAAGCTTCCTCAGTATAGAACCAGGCCTTAGTACTTAAATTTACAGAACCTTGGGCATTTAATTTAACTTCTATTCATATTCTTCAAAAGTGGGTATGAGTTCAATCCAAACTGGTCACCCACCTACAACTTAATATCCTACTTGTTTCCTGTCAACCAAATGTAATGAGGGCATGTCGTAACTGGCGAGGTTAGTTGAACTGCGTGCAATATGAAAAAAGAACTTCTATTCGTACTCATATGTCCAGTACTTGTTTATGAGATTTTAGATTATGTTCCTCCAGTTATTTCAATCATTACGTTCAACTTCATGTTACTCCAATTGTTTACTTCCTTGAAGAATTTGATTTTTCCAAACCCATTTCACTTTAAACTTCAAACTATGATTTTCATTGCATTCATTAATGGGATTCATTAACACATACATTATCGTTGGTTACTCTGTTGTCAATCTACACATGTTTTCTTATCTGTGTCGTCTTCAACTATTTTGTAGATGTAACAAGCTGGCCTCCTTTTACAATTTGGCCGTCGCTTTCAATTAGCAATAGCAACGTACCCATACAGGAGCAAAGGAATCACAACTTGGACCTTTGCTTAAGCTGTGAAAGCAGTAGTAGGGCCACTAAGGTAGTGAATTTAATGGTTATGACTTTGGAGACCCTTCCTCTAGGCTCCCTTTTGTGCGCATTCTTTCGGTAGATATATAATTACGTGTGCTTTATGAAATTTTCATAATTGATTTCTGTTTTATCTCCTAGCCATCGACTAGATGGCGGTGAAATTTGGCAACAAGCAGCTCTGGGAAAGGAAATTCTAGTTTCAAATTGTTTGATCCATAAAGCTTTTAAAAAAAAGTATTAGTCGTTTGTTAATTAAGATTATCCTTTAGATGCCTTTCTCCAAAGCAAAAATACCAACTGATATGTTACTAATTTTTCTAGGATAGTTTTTTCTCCAGCAGATATGATTTCCATCAAATTATTCTTCATCGCGTGCAAGTTTCTGTTTGGACCATATATTTTCTTGGCCAACATTGTCATTGATGTGTTAGGATCAAATTTGTAATATCTATCTACTCATTTGTTGGAAAAATGATTCAAATTCATGTTGTAGGGCCATATATTTTCTTGGCCAACATTGTCATTGATGTGTTCGGATCAAATTTGTAATTTCTATCTACTCATTTGTTGGAAAAATGATTCAAATTCATGTTGTAGGGTTAACGGTTTGTTAAGAATAGTCGAATGTGGATATCTAACTGTATAAAACTGCCAGCTATAATATTGTACTAGCGTTAATAATATCTCAATTCGTTGGCACGAAGCTCGGCCAATAGTTTGAGCGAACTCTTAATAAACTTCAAAACCCCCAAATATTTAAGTGTCAATGCCTAATGGGGTTATATATCTGATGAATGATGTTCTATATCTGATGAATGATGTTCTTCAATCTCTTATATTTTGCCAGTAACTACATGAATTAATCATGTGATGTATCATCATTTTCGATAACCGTGAACTTCTTATTGCAGGCAACAATCGACACTGGCATTCCTTGTGCACTCGCACAAAGTAGTAACATCCCACCTCCAGCAGCACCGAGTTTGCGGTGTGCGATCTGCATAGAACCATTGGTCGACGAAACAACAACCAAATGTGGGCATGTTTTCTGCAGGAGCTGCATCGAAACAGCCATAGCTACCCAGCACAAATGTCCCATTTGTCGGCGTAAGCTTAGAAAACGAGATATTATCCGGATTTACCTTCCCTTTTCAACCTAA

mRNA sequence

ATGGAAGCCAAGATTGCTTTCACATCGATTGCCGCCCCATCCGTCTCTTCCCTTCTCTCCCCTTTTTCCCTTTCCCCATTTCTTCCTCCGCCGCTTTGCCGCCGCAAATCTCCTCCGTCTCCTCGTTCGATCGCCCCGCTCCGGCCGCCGTCCGCCGTCCCGTCTTACGCCAGGTTCGATCTCCTTTACTGTTTCCTTCATGCTACTGTTGTATTGCTTCAAATCTTGCTTGTTTTCTCTGATTTCTCGCCTCTAATTTCCGTTTTATGTATAAAGAAGGCTATCGGAATGAGCTTCTATCTACGTGACTGGAGTGCAAGAGTTGTTGAGAGAACATTAATGGACTTCGACCTAAATTGTCCGCCTCCAGATGAGTGCCACGTTCCAACTGGTCCTCACGAGGGAGCAGCACAGTACTACAATCATTACCAAGGACAAACTATGAACAATCCCGACTTTGTCGATGAGGACATTGCCATAATCTCCCCTAGGAAATTTGCTGAAGCCAGGAAGAATTTACGAAGAAACTATGAAAGGAACTGTGGTGTAGCCACTAGACGTAACGACAACACAGAAATTTATGGTACTCTCTCAGACTTATTGCATGTAACAAGCTGGCCTCCTTTTACAATTTGGCCGTCGCTTTCAATTAGCAATAGCAACGTACCCATACAGGAGCAAAGGAATCACAACTTGGACCTTTGCTTAAGCTGTGAAAGCAGTAGTAGGGCCACTAAGGCAACAATCGACACTGGCATTCCTTGTGCACTCGCACAAAGTAGTAACATCCCACCTCCAGCAGCACCGAGTTTGCGGTGTGCGATCTGCATAGAACCATTGGTCGACGAAACAACAACCAAATGTGGGCATGTTTTCTGCAGGAGCTGCATCGAAACAGCCATAGCTACCCAGCACAAATGTCCCATTTGTCGGCGTAAGCTTAGAAAACGAGATATTATCCGGATTTACCTTCCCTTTTCAACCTAA

Coding sequence (CDS)

ATGGAAGCCAAGATTGCTTTCACATCGATTGCCGCCCCATCCGTCTCTTCCCTTCTCTCCCCTTTTTCCCTTTCCCCATTTCTTCCTCCGCCGCTTTGCCGCCGCAAATCTCCTCCGTCTCCTCGTTCGATCGCCCCGCTCCGGCCGCCGTCCGCCGTCCCGTCTTACGCCAGGTTCGATCTCCTTTACTGTTTCCTTCATGCTACTGTTGTATTGCTTCAAATCTTGCTTGTTTTCTCTGATTTCTCGCCTCTAATTTCCGTTTTATGTATAAAGAAGGCTATCGGAATGAGCTTCTATCTACGTGACTGGAGTGCAAGAGTTGTTGAGAGAACATTAATGGACTTCGACCTAAATTGTCCGCCTCCAGATGAGTGCCACGTTCCAACTGGTCCTCACGAGGGAGCAGCACAGTACTACAATCATTACCAAGGACAAACTATGAACAATCCCGACTTTGTCGATGAGGACATTGCCATAATCTCCCCTAGGAAATTTGCTGAAGCCAGGAAGAATTTACGAAGAAACTATGAAAGGAACTGTGGTGTAGCCACTAGACGTAACGACAACACAGAAATTTATGGTACTCTCTCAGACTTATTGCATGTAACAAGCTGGCCTCCTTTTACAATTTGGCCGTCGCTTTCAATTAGCAATAGCAACGTACCCATACAGGAGCAAAGGAATCACAACTTGGACCTTTGCTTAAGCTGTGAAAGCAGTAGTAGGGCCACTAAGGCAACAATCGACACTGGCATTCCTTGTGCACTCGCACAAAGTAGTAACATCCCACCTCCAGCAGCACCGAGTTTGCGGTGTGCGATCTGCATAGAACCATTGGTCGACGAAACAACAACCAAATGTGGGCATGTTTTCTGCAGGAGCTGCATCGAAACAGCCATAGCTACCCAGCACAAATGTCCCATTTGTCGGCGTAAGCTTAGAAAACGAGATATTATCCGGATTTACCTTCCCTTTTCAACCTAA

Protein sequence

MEAKIAFTSIAAPSVSSLLSPFSLSPFLPPPLCRRKSPPSPRSIAPLRPPSAVPSYARFDLLYCFLHATVVLLQILLVFSDFSPLISVLCIKKAIGMSFYLRDWSARVVERTLMDFDLNCPPPDECHVPTGPHEGAAQYYNHYQGQTMNNPDFVDEDIAIISPRKFAEARKNLRRNYERNCGVATRRNDNTEIYGTLSDLLHVTSWPPFTIWPSLSISNSNVPIQEQRNHNLDLCLSCESSSRATKATIDTGIPCALAQSSNIPPPAAPSLRCAICIEPLVDETTTKCGHVFCRSCIETAIATQHKCPICRRKLRKRDIIRIYLPFST

Homology

[Close]

BLAST of Sed0024686 vs. NCBI nr
Match: XP_022147116.1 (E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8-like [Momordica charantia] >XP_022147117.1 E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8-like [Momordica charantia])

HSP 1 Score: 353.2 bits (905), Expect = 2.4e-93
Identity = 177/230 (76.96%), Postives = 196/230 (85.22%), Query Frame = 0


Query: 101 LRDWSARVVE-RTLMDFDLNCPPPDECHVPTGPHEGAAQYYNHYQGQTMNNPDFVDEDIA 160
           L +W+ARVVE RT+MDFDLNCPPPDEC  PTGP E AAQ++NH+Q Q  +NPD VDEDIA
Sbjct: 9   LHEWNARVVERRTVMDFDLNCPPPDECINPTGPREEAAQFFNHHQRQATDNPDVVDEDIA 68

Query: 161 IISPRKFAEARKNLRRN-YERNCGVATRRNDNTEIYGTLSDLLHVTSWPPFTIWPSLSIS 220
           IISPRKFAEARKN RRN ++ +CGVA R N NTE+YG LSD   VTSWPPFTIWP L+I 
Sbjct: 69  IISPRKFAEARKNFRRNHFDSSCGVAVRVNANTEVYGALSD---VTSWPPFTIWPPLTI- 128

Query: 221 NSNVPIQEQRNHNLDLCLSCESSSRATKATIDTGIPCALAQSSNIPPPAAPSLRCAICIE 280
           N+NV I+EQ  HNLDLCLS ESSSRA     DT IP ALAQSS+I PPAAPSLRCAICIE
Sbjct: 129 NNNVSIREQTIHNLDLCLSSESSSRARTKATDTDIPSALAQSSSIIPPAAPSLRCAICIE 188

Query: 281 PLVDETTTKCGHVFCRSCIETAIATQHKCPICRRKLRKRDIIRIYLPFST 329
           PLV+ETTTKCGHVFCR+CIETAIATQH+CPICRRKLRKRDIIRIYLPFS+
Sbjct: 189 PLVEETTTKCGHVFCRNCIETAIATQHRCPICRRKLRKRDIIRIYLPFSS 234

[Close]

BLAST of Sed0024686 vs. NCBI nr
Match: KAG7028749.1 (hypothetical protein SDJN02_09930, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349.4 bits (895), Expect = 3.5e-92
Identity = 202/309 (65.37%), Postives = 218/309 (70.55%), Query Frame = 0


Query: 25  SPFLPPPLCRRKSPPSPRSIAPLRPPSAVPSYARFDLLYCFLHATVVLLQILLVFSDFSP 84
           SP L P L   K    PRSI PL P  AVPS AR                          
Sbjct: 32  SPILLPLLRFCKFLAVPRSILPLLPLFAVPSSAR-------------------------- 91

Query: 85  LISVLCIKKAIGMSFY----LRDWSARVVER-TLMDFDLNCPPPDECHVPTGPHEGAAQY 144
                   KA+GMSF     L++WSARVVER T+MDFDLNCPPPDEC  PTGPH+ A QY
Sbjct: 92  --------KAVGMSFQSRNDLQEWSARVVERGTVMDFDLNCPPPDECIDPTGPHQEATQY 151

Query: 145 YNHYQGQTMNNPDFVDEDIAIISPRKFAEARKNLRRN-YERNCGVATRRNDNTEIYGTLS 204
           YNHYQGQ M+NP+FVDEDIAIISPRKFAEARKN RRN +E +CGVA RRN      G  S
Sbjct: 152 YNHYQGQAMDNPEFVDEDIAIISPRKFAEARKNFRRNHFESSCGVAIRRN------GAFS 211

Query: 205 DLLHVTSWPPFTIWPSLSISNSNVPIQEQRNHNLDLCLSCESSSRATKATIDTGIPCALA 264
           DL   TS  PFTIWP L+  N NV IQEQ  HNLDLCLSCESSS+ATKATIDT IP ALA
Sbjct: 212 DL---TSLAPFTIWPPLTDRN-NVSIQEQTIHNLDLCLSCESSSKATKATIDTDIPSALA 271

Query: 265 Q-SSNIPPPAAPSLRCAICIEPLVDETTTKCGHVFCRSCIETAIATQHKCPICRRKLRKR 324
           Q SS++PP AA  LRCAICIE LV+ETTTKCGHVFC+SCIETAIATQH+CPICRRKLRKR
Sbjct: 272 QTSSSLPPAAASGLRCAICIEALVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKR 296

Query: 325 DIIRIYLPF 327
           DIIRIYLPF
Sbjct: 332 DIIRIYLPF 296

[Close]

BLAST of Sed0024686 vs. NCBI nr
Match: XP_023540616.1 (uncharacterized protein LOC111800927 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348.6 bits (893), Expect = 5.9e-92
Identity = 190/275 (69.09%), Postives = 216/275 (78.55%), Query Frame = 0


Query: 65  FLHATVVLLQILL------VFSDFSPLISVLCIKKAIGMSFY----LRDWSARVVER-TL 124
           FL  T+V++Q  L      ++ D S ++ +    KA+GMSF     L++WSARVVER T+
Sbjct: 106 FLGITLVVIQRFLDPNHFAIYVDDSIVVGLKDKGKAVGMSFQSRNDLQEWSARVVERGTV 165

Query: 125 MDFDLNCPPPDECHVPTGPHEGAAQYYNHYQGQTMNNPDFVDEDIAIISPRKFAEARKNL 184
           MDFDLNCPPPDEC  PTGPH+ A QYYNHYQGQ M+NP+FVDEDIAIISPRKFAEARKN 
Sbjct: 166 MDFDLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNPEFVDEDIAIISPRKFAEARKNF 225

Query: 185 RRN-YERNCGVATRRNDNTEIYGTLSDLLHVTSWPPFTIWPSLSISNSNVPIQEQRNHNL 244
           RRN +E +CGVA RRN      G  SDL   TS  PFTIWP L+ + +NV IQEQ  HNL
Sbjct: 226 RRNHFESSCGVAIRRN------GAFSDL---TSLAPFTIWPPLT-NRNNVSIQEQTIHNL 285

Query: 245 DLCLSCESSSRATKATIDTGIPCALAQ-SSNIPPPAAPSLRCAICIEPLVDETTTKCGHV 304
           DLCLSCESSS+ATKATIDT IP ALAQ SS++PP AA  LRCAICIE LV+ETTTKCGHV
Sbjct: 286 DLCLSCESSSKATKATIDTDIPSALAQTSSSLPPAAASGLRCAICIEALVEETTTKCGHV 345

Query: 305 FCRSCIETAIATQHKCPICRRKLRKRDIIRIYLPF 327
           FC+SCIETAIATQH+CPICRRKLRKRDIIRIYLPF
Sbjct: 346 FCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF 370

[Close]

BLAST of Sed0024686 vs. NCBI nr
Match: XP_022935007.1 (uncharacterized protein LOC111441975 [Cucurbita moschata])

HSP 1 Score: 341.3 bits (874), Expect = 9.4e-90
Identity = 177/229 (77.29%), Postives = 192/229 (83.84%), Query Frame = 0


Query: 101 LRDWSARVVER-TLMDFDLNCPPPDECHVPTGPHEGAAQYYNHYQGQTMNNPDFVDEDIA 160
           L++WSARVVER T+MDFDLNCPPPDEC  PTGPH+ A QYYNHYQGQ M+NP+FVDEDIA
Sbjct: 9   LQEWSARVVERGTVMDFDLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNPEFVDEDIA 68

Query: 161 IISPRKFAEARKNLRRN-YERNCGVATRRNDNTEIYGTLSDLLHVTSWPPFTIWPSLSIS 220
           IISPRKFAEARKN RRN +E +CGVA RRN      G  SDL   TS  PFTIWP L+  
Sbjct: 69  IISPRKFAEARKNFRRNHFESSCGVAIRRN------GAFSDL---TSLAPFTIWPPLTDR 128

Query: 221 NSNVPIQEQRNHNLDLCLSCESSSRATKATIDTGIPCALAQ-SSNIPPPAAPSLRCAICI 280
           N NV IQEQ  HNLDLCLSCESSS+ATKATIDT IP ALAQ SS++PP AA  LRCAICI
Sbjct: 129 N-NVSIQEQTIHNLDLCLSCESSSKATKATIDTDIPSALAQTSSSLPPAAASGLRCAICI 188

Query: 281 EPLVDETTTKCGHVFCRSCIETAIATQHKCPICRRKLRKRDIIRIYLPF 327
           E LV+ETTTKCGHVFC+SCIETAIATQH+CPICRRKLRKRDIIRIYLPF
Sbjct: 189 EALVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF 227

[Close]

BLAST of Sed0024686 vs. NCBI nr
Match: XP_022974776.1 (E3 ubiquitin-protein ligase BRE1-like [Cucurbita maxima])

HSP 1 Score: 337.8 bits (865), Expect = 1.0e-88
Identity = 174/229 (75.98%), Postives = 194/229 (84.72%), Query Frame = 0


Query: 101 LRDWSARVVER-TLMDFDLNCPPPDECHVPTGPHEGAAQYYNHYQGQTMNNPDFVDEDIA 160
           L++WSARVVER T+MDFDLN PPPDEC  PTGPH+ A QYYNHYQGQ M+NP+FVDEDIA
Sbjct: 9   LQEWSARVVERGTVMDFDLNFPPPDECIDPTGPHQEATQYYNHYQGQAMDNPEFVDEDIA 68

Query: 161 IISPRKFAEARKNLRRN-YERNCGVATRRNDNTEIYGTLSDLLHVTSWPPFTIWPSLSIS 220
           IISPRKFAEARKN RRN +E +CGVA RRN      G  SDL   +S  PFTIWP+L+ S
Sbjct: 69  IISPRKFAEARKNFRRNHFESSCGVAIRRN------GAFSDL---SSLAPFTIWPTLT-S 128

Query: 221 NSNVPIQEQRNHNLDLCLSCESSSRATKATIDTGIPCALAQ-SSNIPPPAAPSLRCAICI 280
            +NV IQEQ  HNLDLCLSCESSS+ATKATIDTGIP ALAQ SS++PP A+  LRCAIC+
Sbjct: 129 RNNVSIQEQTIHNLDLCLSCESSSKATKATIDTGIPSALAQTSSSLPPAASSGLRCAICM 188

Query: 281 EPLVDETTTKCGHVFCRSCIETAIATQHKCPICRRKLRKRDIIRIYLPF 327
           E LV+ETTTKCGHVFC+SCIETAIATQH+CPICRRKLRKRDIIRIYLPF
Sbjct: 189 EALVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF 227

[Close]

BLAST of Sed0024686 vs. ExPASy Swiss-Prot
Match: Q9D9R0 (E3 ubiquitin-protein ligase RNF125 OS=Mus musculus OX=10090 GN=Rnf125 PE=2 SV=3)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-06
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 241 SSRATKATIDTGIPCALAQSSNIPPPAAPSLRCAICIEPLVDETTTKCGHVFCRSCIETA 300
           SS ++K+   +  P  L +S +   P   S  C++C+E L     T+CGHVFCRSCI T+
Sbjct: 6   SSDSSKSAPASATPRTLERSGDSELPIT-SFDCSVCLEVLHQPVRTRCGHVFCRSCIATS 65

Query: 301 IATQHK--CPICRRKL 315
           I   +K  CP CR  L
Sbjct: 66  IKNNNKWTCPYCRAYL 80

[Close]

BLAST of Sed0024686 vs. ExPASy Swiss-Prot
Match: Q00940 (Peroxisome biogenesis factor 10 OS=Pichia angusta OX=870730 GN=PEX10 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-05
Identity = 21/64 (32.81%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 257 LAQSSNIPPPAAPSLRCAICIEPLVDETTTKCGHVFCRSCIETAIATQHKCPICRRKLRK 316
           LA    +P     S  C +C+ P+ D +  +CGHVFC  C+   +  + +CP+CR K+R+
Sbjct: 229 LADPKVLPYLPEASRTCMLCLSPMKDPSCGECGHVFCWKCVLDWVKERQECPLCRAKMRE 288

Query: 317 RDII 321
             ++
Sbjct: 289 SQLL 292

[Close]

BLAST of Sed0024686 vs. ExPASy Swiss-Prot
Match: Q3UWZ0 (Tripartite motif-containing protein 75 OS=Mus musculus OX=10090 GN=Trim75 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-05
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 272 RCAICIEPLVDETTTKCGHVFCRSCIETAIATQH---KCPICRRKLRKRDI 320
           +C IC++ L D  T +CGH FCRSCI+   A Q     CP+CR + + R++
Sbjct: 15  KCPICLDDLTDPVTVECGHNFCRSCIKDFWAGQQATSSCPVCRHQCQHRNL 65

[Close]

BLAST of Sed0024686 vs. ExPASy Swiss-Prot
Match: Q95KF1 (E3 ubiquitin-protein ligase RNF125 OS=Macaca fascicularis OX=9541 GN=RNF125 PE=2 SV=3)

HSP 1 Score: 51.6 bits (122), Expect = 2.0e-05
Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 241 SSRATKATIDTGIPCALAQSSNIPPPAAPSLRCAICIEPLVDETTTKCGHVFCRSCIETA 300
           SS + K+   +  P AL +  + P     S  CA+C+E L     T+CGHVFCRSCI T+
Sbjct: 6   SSDSGKSAPPSATPRALERRGD-PELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATS 65

Query: 301 IA-TQHKCPICRRKL 315
           +   +  CP CR  L
Sbjct: 66  LKNNKWTCPYCRAYL 79

[Close]

BLAST of Sed0024686 vs. ExPASy Swiss-Prot
Match: P87176 (E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=slx8 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.6e-05
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 272 RCAICIEPLVDETTTKCGHVFCRSCIETAIAT---QHKCPICRRKLRKRDII 321
           +C IC++   + + T CGH+FC  CI +A+ T     KCP+CRRK+    +I
Sbjct: 205 KCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNKVI 256

[Close]

BLAST of Sed0024686 vs. ExPASy TrEMBL
Match: A0A6J1D1D9 (E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8-like OS=Momordica charantia OX=3673 GN=LOC111016128 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 1.2e-93
Identity = 177/230 (76.96%), Postives = 196/230 (85.22%), Query Frame = 0


Query: 101 LRDWSARVVE-RTLMDFDLNCPPPDECHVPTGPHEGAAQYYNHYQGQTMNNPDFVDEDIA 160
           L +W+ARVVE RT+MDFDLNCPPPDEC  PTGP E AAQ++NH+Q Q  +NPD VDEDIA
Sbjct: 9   LHEWNARVVERRTVMDFDLNCPPPDECINPTGPREEAAQFFNHHQRQATDNPDVVDEDIA 68

Query: 161 IISPRKFAEARKNLRRN-YERNCGVATRRNDNTEIYGTLSDLLHVTSWPPFTIWPSLSIS 220
           IISPRKFAEARKN RRN ++ +CGVA R N NTE+YG LSD   VTSWPPFTIWP L+I 
Sbjct: 69  IISPRKFAEARKNFRRNHFDSSCGVAVRVNANTEVYGALSD---VTSWPPFTIWPPLTI- 128

Query: 221 NSNVPIQEQRNHNLDLCLSCESSSRATKATIDTGIPCALAQSSNIPPPAAPSLRCAICIE 280
           N+NV I+EQ  HNLDLCLS ESSSRA     DT IP ALAQSS+I PPAAPSLRCAICIE
Sbjct: 129 NNNVSIREQTIHNLDLCLSSESSSRARTKATDTDIPSALAQSSSIIPPAAPSLRCAICIE 188

Query: 281 PLVDETTTKCGHVFCRSCIETAIATQHKCPICRRKLRKRDIIRIYLPFST 329
           PLV+ETTTKCGHVFCR+CIETAIATQH+CPICRRKLRKRDIIRIYLPFS+
Sbjct: 189 PLVEETTTKCGHVFCRNCIETAIATQHRCPICRRKLRKRDIIRIYLPFSS 234

[Close]

BLAST of Sed0024686 vs. ExPASy TrEMBL
Match: A0A6J1F4D6 (uncharacterized protein LOC111441975 OS=Cucurbita moschata OX=3662 GN=LOC111441975 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 4.6e-90
Identity = 177/229 (77.29%), Postives = 192/229 (83.84%), Query Frame = 0


Query: 101 LRDWSARVVER-TLMDFDLNCPPPDECHVPTGPHEGAAQYYNHYQGQTMNNPDFVDEDIA 160
           L++WSARVVER T+MDFDLNCPPPDEC  PTGPH+ A QYYNHYQGQ M+NP+FVDEDIA
Sbjct: 9   LQEWSARVVERGTVMDFDLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNPEFVDEDIA 68

Query: 161 IISPRKFAEARKNLRRN-YERNCGVATRRNDNTEIYGTLSDLLHVTSWPPFTIWPSLSIS 220
           IISPRKFAEARKN RRN +E +CGVA RRN      G  SDL   TS  PFTIWP L+  
Sbjct: 69  IISPRKFAEARKNFRRNHFESSCGVAIRRN------GAFSDL---TSLAPFTIWPPLTDR 128

Query: 221 NSNVPIQEQRNHNLDLCLSCESSSRATKATIDTGIPCALAQ-SSNIPPPAAPSLRCAICI 280
           N NV IQEQ  HNLDLCLSCESSS+ATKATIDT IP ALAQ SS++PP AA  LRCAICI
Sbjct: 129 N-NVSIQEQTIHNLDLCLSCESSSKATKATIDTDIPSALAQTSSSLPPAAASGLRCAICI 188

Query: 281 EPLVDETTTKCGHVFCRSCIETAIATQHKCPICRRKLRKRDIIRIYLPF 327
           E LV+ETTTKCGHVFC+SCIETAIATQH+CPICRRKLRKRDIIRIYLPF
Sbjct: 189 EALVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF 227

[Close]

BLAST of Sed0024686 vs. ExPASy TrEMBL
Match: A0A6J1ICB2 (E3 ubiquitin-protein ligase BRE1-like OS=Cucurbita maxima OX=3661 GN=LOC111473500 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 5.0e-89
Identity = 174/229 (75.98%), Postives = 194/229 (84.72%), Query Frame = 0


Query: 101 LRDWSARVVER-TLMDFDLNCPPPDECHVPTGPHEGAAQYYNHYQGQTMNNPDFVDEDIA 160
           L++WSARVVER T+MDFDLN PPPDEC  PTGPH+ A QYYNHYQGQ M+NP+FVDEDIA
Sbjct: 9   LQEWSARVVERGTVMDFDLNFPPPDECIDPTGPHQEATQYYNHYQGQAMDNPEFVDEDIA 68

Query: 161 IISPRKFAEARKNLRRN-YERNCGVATRRNDNTEIYGTLSDLLHVTSWPPFTIWPSLSIS 220
           IISPRKFAEARKN RRN +E +CGVA RRN      G  SDL   +S  PFTIWP+L+ S
Sbjct: 69  IISPRKFAEARKNFRRNHFESSCGVAIRRN------GAFSDL---SSLAPFTIWPTLT-S 128

Query: 221 NSNVPIQEQRNHNLDLCLSCESSSRATKATIDTGIPCALAQ-SSNIPPPAAPSLRCAICI 280
            +NV IQEQ  HNLDLCLSCESSS+ATKATIDTGIP ALAQ SS++PP A+  LRCAIC+
Sbjct: 129 RNNVSIQEQTIHNLDLCLSCESSSKATKATIDTGIPSALAQTSSSLPPAASSGLRCAICM 188

Query: 281 EPLVDETTTKCGHVFCRSCIETAIATQHKCPICRRKLRKRDIIRIYLPF 327
           E LV+ETTTKCGHVFC+SCIETAIATQH+CPICRRKLRKRDIIRIYLPF
Sbjct: 189 EALVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF 227

[Close]

BLAST of Sed0024686 vs. ExPASy TrEMBL
Match: A0A5A7U158 (E3 ubiquitin-protein ligase RNF4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002840 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 1.4e-86
Identity = 171/231 (74.03%), Postives = 189/231 (81.82%), Query Frame = 0


Query: 101 LRDWSARVVE-RTLMDFDLNCPPPDECHVPTGPHEGAAQYYNHYQGQTMNNPDFVDEDIA 160
           L DWSARV+E RT++DFDLNCPPPDEC  PTGP + AAQYYNHYQGQ     D +DEDIA
Sbjct: 9   LHDWSARVIERRTVLDFDLNCPPPDECIDPTGPRDEAAQYYNHYQGQA---TDAIDEDIA 68

Query: 161 IISPRKFAEARKNLRRN-YERNCGVATRRNDNTEIYGTLSDLLHVTSWPPFTIWPSLSIS 220
           IISPRKFAEARKN RRN +E   G   RRN NTE+YG LSD   VT+WPPFTIW  L+IS
Sbjct: 69  IISPRKFAEARKNFRRNHFESGYGAVIRRNGNTEVYGALSD---VTTWPPFTIWSPLTIS 128

Query: 221 NSNVPIQEQRN-HNLDLCLSCESSSRATKATIDTGIPCALAQSSNIPPPAAPSLRCAICI 280
           N NV +QEQ+  HNLDL LSCESSSRATKA  DT IP  LA SS+I PP   +LRCAICI
Sbjct: 129 N-NVSLQEQQTIHNLDLRLSCESSSRATKAKTDTDIPSTLALSSSI-PPTDRTLRCAICI 188

Query: 281 EPLVDETTTKCGHVFCRSCIETAIATQHKCPICRRKLRKRDIIRIYLPFST 329
           EPLV+ETTTKCGHVFCR+CIETAIATQH+CPICRRKLRKRDIIRIYLPF++
Sbjct: 189 EPLVEETTTKCGHVFCRNCIETAIATQHRCPICRRKLRKRDIIRIYLPFTS 231

[Close]

BLAST of Sed0024686 vs. ExPASy TrEMBL
Match: A0A1S3AW86 (uncharacterized protein LOC103483470 OS=Cucumis melo OX=3656 GN=LOC103483470 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 1.4e-86
Identity = 171/231 (74.03%), Postives = 189/231 (81.82%), Query Frame = 0


Query: 101 LRDWSARVVE-RTLMDFDLNCPPPDECHVPTGPHEGAAQYYNHYQGQTMNNPDFVDEDIA 160
           L DWSARV+E RT++DFDLNCPPPDEC  PTGP + AAQYYNHYQGQ     D +DEDIA
Sbjct: 9   LHDWSARVIERRTVLDFDLNCPPPDECIDPTGPRDEAAQYYNHYQGQA---TDAIDEDIA 68

Query: 161 IISPRKFAEARKNLRRN-YERNCGVATRRNDNTEIYGTLSDLLHVTSWPPFTIWPSLSIS 220
           IISPRKFAEARKN RRN +E   G   RRN NTE+YG LSD   VT+WPPFTIW  L+IS
Sbjct: 69  IISPRKFAEARKNFRRNHFESGYGAVIRRNGNTEVYGALSD---VTTWPPFTIWSPLTIS 128

Query: 221 NSNVPIQEQRN-HNLDLCLSCESSSRATKATIDTGIPCALAQSSNIPPPAAPSLRCAICI 280
           N NV +QEQ+  HNLDL LSCESSSRATKA  DT IP  LA SS+I PP   +LRCAICI
Sbjct: 129 N-NVSLQEQQTIHNLDLRLSCESSSRATKAKTDTDIPSTLALSSSI-PPTDRTLRCAICI 188

Query: 281 EPLVDETTTKCGHVFCRSCIETAIATQHKCPICRRKLRKRDIIRIYLPFST 329
           EPLV+ETTTKCGHVFCR+CIETAIATQH+CPICRRKLRKRDIIRIYLPF++
Sbjct: 189 EPLVEETTTKCGHVFCRNCIETAIATQHRCPICRRKLRKRDIIRIYLPFTS 231

[Close]

BLAST of Sed0024686 vs. TAIR 10
Match: AT5G48655.2 (RING/U-box superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-17
Identity = 59/209 (28.23%), Postives = 96/209 (45.93%), Query Frame = 0


Query: 117 DLNCPPPDECHVPTGPHEGAAQYYNHYQGQTMNNPDFVDEDIAIISPRKFAEARKNLRRN 176
           DLN  P D+                     TM + D +++D+   S   FAEA+   R  
Sbjct: 20  DLNAVPVDQEGTSASVRTLTVPITPSQPAPTMIDVDAIEDDVIESSASAFAEAKSKSRNA 79

Query: 177 YERNCGVATRRNDNTEIYGTLSDLLHVTSWPPFTIWPSLSISNSNVPIQEQRNHNLDLCL 236
             R   V      + E  GT       T +P            +N+  + +R  + +  +
Sbjct: 80  RRRPLMV------DVESGGT-------TRFP------------ANISNKRRRIPSSESVI 139

Query: 237 SCESSSRATKATIDTGIPCALAQSSNIPPPAAPSLRCAICIEPLVDETTTKCGHVFCRSC 296
            CE +S   +  + + +  + A +   PPP  P   C IC+ P  +E +TKCGH+FC+ C
Sbjct: 140 DCEHASVNDEVNMSSRVSRSKAPA---PPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGC 199

Query: 297 IETAIATQHKCPICRRKLRKRDIIRIYLP 326
           I+ AI+ Q KCP CR+K+  +++IR++LP
Sbjct: 200 IKMAISRQGKCPTCRKKVTAKELIRVFLP 200

[Close]

BLAST of Sed0024686 vs. TAIR 10
Match: AT5G48655.1 (RING/U-box superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-17
Identity = 59/209 (28.23%), Postives = 96/209 (45.93%), Query Frame = 0


Query: 117 DLNCPPPDECHVPTGPHEGAAQYYNHYQGQTMNNPDFVDEDIAIISPRKFAEARKNLRRN 176
           DLN  P D+                     TM + D +++D+   S   FAEA+   R  
Sbjct: 20  DLNAVPVDQEGTSASVRTLTVPITPSQPAPTMIDVDAIEDDVIESSASAFAEAKSKSRNA 79

Query: 177 YERNCGVATRRNDNTEIYGTLSDLLHVTSWPPFTIWPSLSISNSNVPIQEQRNHNLDLCL 236
             R   V      + E  GT       T +P            +N+  + +R  + +  +
Sbjct: 80  RRRPLMV------DVESGGT-------TRFP------------ANISNKRRRIPSSESVI 139

Query: 237 SCESSSRATKATIDTGIPCALAQSSNIPPPAAPSLRCAICIEPLVDETTTKCGHVFCRSC 296
            CE +S   +  + + +  + A +   PPP  P   C IC+ P  +E +TKCGH+FC+ C
Sbjct: 140 DCEHASVNDEVNMSSRVSRSKAPA---PPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGC 199

Query: 297 IETAIATQHKCPICRRKLRKRDIIRIYLP 326
           I+ AI+ Q KCP CR+K+  +++IR++LP
Sbjct: 200 IKMAISRQGKCPTCRKKVTAKELIRVFLP 200

[Close]

BLAST of Sed0024686 vs. TAIR 10
Match: AT5G48655.3 (RING/U-box superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-17
Identity = 59/209 (28.23%), Postives = 96/209 (45.93%), Query Frame = 0


Query: 117 DLNCPPPDECHVPTGPHEGAAQYYNHYQGQTMNNPDFVDEDIAIISPRKFAEARKNLRRN 176
           DLN  P D+                     TM + D +++D+   S   FAEA+   R  
Sbjct: 20  DLNAVPVDQEGTSASVRTLTVPITPSQPAPTMIDVDAIEDDVIESSASAFAEAKSKSRNA 79

Query: 177 YERNCGVATRRNDNTEIYGTLSDLLHVTSWPPFTIWPSLSISNSNVPIQEQRNHNLDLCL 236
             R   V      + E  GT       T +P            +N+  + +R  + +  +
Sbjct: 80  RRRPLMV------DVESGGT-------TRFP------------ANISNKRRRIPSSESVI 139

Query: 237 SCESSSRATKATIDTGIPCALAQSSNIPPPAAPSLRCAICIEPLVDETTTKCGHVFCRSC 296
            CE +S   +  + + +  + A +   PPP  P   C IC+ P  +E +TKCGH+FC+ C
Sbjct: 140 DCEHASVNDEVNMSSRVSRSKAPA---PPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGC 199

Query: 297 IETAIATQHKCPICRRKLRKRDIIRIYLP 326
           I+ AI+ Q KCP CR+K+  +++IR++LP
Sbjct: 200 IKMAISRQGKCPTCRKKVTAKELIRVFLP 200

[Close]

BLAST of Sed0024686 vs. TAIR 10
Match: AT3G07200.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 8.1e-15
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 264 PPPAAPSLRCAICIEPLVDETTTKCGHVFCRSCIETAIATQHKCPICRRKLRKRDIIRIY 323
           PP   P   C IC+ P   E +TKCGH+FC+ CI+ A++ Q KCP CR+K+  +D+IR++
Sbjct: 118 PPVEEPKFSCPICLCPFTQEVSTKCGHIFCKKCIKNALSLQAKCPTCRKKITVKDLIRVF 177

Query: 324 LP 326
           LP
Sbjct: 178 LP 179

[Close]

BLAST of Sed0024686 vs. TAIR 10
Match: AT3G07200.2 (RING/U-box superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 8.1e-15
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 264 PPPAAPSLRCAICIEPLVDETTTKCGHVFCRSCIETAIATQHKCPICRRKLRKRDIIRIY 323
           PP   P   C IC+ P   E +TKCGH+FC+ CI+ A++ Q KCP CR+K+  +D+IR++
Sbjct: 118 PPVEEPKFSCPICLCPFTQEVSTKCGHIFCKKCIKNALSLQAKCPTCRKKITVKDLIRVF 177

Query: 324 LP 326
           LP
Sbjct: 178 LP 179

The following BLAST results are available for this feature:

BLAST of Sed0024686 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147116.1	2.4e-93	76.96	E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8-like [Momordica charan...	[more]
KAG7028749.1	3.5e-92	65.37	hypothetical protein SDJN02_09930, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023540616.1	5.9e-92	69.09	uncharacterized protein LOC111800927 [Cucurbita pepo subsp. pepo]	[more]
XP_022935007.1	9.4e-90	77.29	uncharacterized protein LOC111441975 [Cucurbita moschata]	[more]
XP_022974776.1	1.0e-88	75.98	E3 ubiquitin-protein ligase BRE1-like [Cucurbita maxima]	[more]

BLAST of Sed0024686 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9D9R0	2.3e-06	40.79	E3 ubiquitin-protein ligase RNF125 OS=Mus musculus OX=10090 GN=Rnf125 PE=2 SV=3	[more]
Q00940	1.1e-05	32.81	Peroxisome biogenesis factor 10 OS=Pichia angusta OX=870730 GN=PEX10 PE=3 SV=1	[more]
Q3UWZ0	1.1e-05	43.14	Tripartite motif-containing protein 75 OS=Mus musculus OX=10090 GN=Trim75 PE=2 S...	[more]
Q95KF1	2.0e-05	40.00	E3 ubiquitin-protein ligase RNF125 OS=Macaca fascicularis OX=9541 GN=RNF125 PE=2...	[more]
P87176	2.6e-05	40.38	E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 OS=Schizosaccharomyces...	[more]

BLAST of Sed0024686 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D1D9	1.2e-93	76.96	E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8-like OS=Momordica char...	[more]
A0A6J1F4D6	4.6e-90	77.29	uncharacterized protein LOC111441975 OS=Cucurbita moschata OX=3662 GN=LOC1114419...	[more]
A0A6J1ICB2	5.0e-89	75.98	E3 ubiquitin-protein ligase BRE1-like OS=Cucurbita maxima OX=3661 GN=LOC11147350...	[more]
A0A5A7U158	1.4e-86	74.03	E3 ubiquitin-protein ligase RNF4-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3AW86	1.4e-86	74.03	uncharacterized protein LOC103483470 OS=Cucumis melo OX=3656 GN=LOC103483470 PE=...	[more]

BLAST of Sed0024686 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48655.2	1.7e-17	28.23	RING/U-box superfamily protein	[more]
AT5G48655.1	1.7e-17	28.23	RING/U-box superfamily protein	[more]
AT5G48655.3	1.7e-17	28.23	RING/U-box superfamily protein	[more]
AT3G07200.1	8.1e-15	48.39	RING/U-box superfamily protein	[more]
AT3G07200.2	8.1e-15	48.39	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 273..310 e-value: 2.5E-5 score: 33.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 273..311 score: 13.300693
None	No IPR available	PFAM	PF13923	zf-C3HC4_2	coord: 272..310 e-value: 1.8E-10 score: 40.4
None	No IPR available	PANTHER	PTHR47094	ELFLESS, ISOFORM B	coord: 109..325
None	No IPR available	PANTHER	PTHR47094:SF12	ELFLESS, ISOFORM B	coord: 109..325
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 268..324
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 267..324 e-value: 2.0E-17 score: 64.3
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 288..297

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024686.1	Sed0024686.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0046872	metal ion binding