Sed0024574 (gene) Chayote v1

Overview
NameSed0024574
Typegene
OrganismSechium edule (Chayote v1)
DescriptionSmall VCP/p97-interacting protein
LocationLG11: 22570467 .. 22572213 (+)
RNA-Seq ExpressionSed0024574
SyntenySed0024574
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCAATGCGTAAGTTGCGTGGGCGAAGGCGAAAAGCAACAGAGAAAAGAGGAACAAAGATTGGCCTCCATGGAAGCTCGCGCCAAAGCTGCTGAAGCTGCTCACAGGAGGTGATATAATGTTCTTTCCCTTTTCTGTAATCGCCTTCTCTTTCAATTTAAACAGCTTATCATTTTGATTCGCGATTGTGCAGGAAAGATAATCATACAACAGCTTCTTTTTTTTTAATGAGGGTTATATTTTTAGTTTTCTGTTTTGTACTAACCAATTTGATGAGGAGGTGTTTGGATGAGGAGGTGTTTGAAGAGTTATTTTAAGTGATTAGAATGGGTAGATATTTTGAGCAATCCAATTTTAGCGATGTGTGTGTGCTAGAATTTAGATAGTAGAAGGAACAAGCTTAATTTATTTATTCTTTTCAACTACAATCATGATGAACCTTAGTCTAAGTATTATTTAAGGTTTATGGACCCAACTCCTTTTTCCTGCAAAATTCCAAGTGTCTTAGCTTAAAGAAAAGAGGGGAAGAAACACCGTTTTCAGAGTGCAAAACACAGCACAAGGCTATACTATACTCTCCTTGATCGCCTCAAAGTGAGAGGGGATAAAAAGGCGAGGCTAGAGGCGCATCAAATAAATGCACTAAATAATATATTGAGCATAAATGGATAAATAAAACATATTTGTATTCCCATAGAATTTCAAATTCATACAAAATAATACTAAAAAGTAAAAAGTAAAAGAATAATAAATCACACAAATTATGTTATTACAAGATATATTATGCGTATTAAATTATTATTTGTATAAAAAAAATTGTAATTAACCAAAAGTATAAAAAAACAAAGACTCTACATCAAATAACTTGAATAAACACACACACATATATATTTGAGATAACAATTAAACAAATTTAGTATCCTTAATAAAGACTTCACATGATTGTTGAACTTCTTCATGAGCTAATTCTAGGTTCGTTTTGTGGATGTTAAGTAAGCATATTGATAAATAAATAAAACTTTAACAAGGTGCATGTCTTGGCCTGAGGAGAAGGCGATGTGGTGCTTATAATGGCAAGGAAAGGCCAGGGCTTGATTGAAGGAGCTAGCCTTAGCTATTTTAGAGGCGCAATACCTGCGTATGTGCAAGGCGATGGCATTGAAAACATTGGGGAGAAAGCAAAAATAGAAGCCATGAATAGTTTAATTTGAGATGACTGAATTGCTACCATCAATCTTTTCCTTAAAATTTCACTTTGGTATACACCAATTACTCATTTACACCAAAGATGTAACTGCATACTTAAACTGAATTTTTGAAGTACATCCAGTCCAGTGGCTGCTCTTGATAATGTGTTAACTGTTAAGCAGTCTGTCCTAAATTAAAATGAGATTCCAAATTAGGAACTATGATGGGAATCGCCCATGTGTTCTTATACTGAAAAATGATATAAATATTTTCAGGCAAGAAGATTTTGAAAAATCTGCTGCAGGAAGAGCGGCACGCGCTCAGATGGCAGCAAATGCAAAGCAATCTGCTAACACTAACAAGGGAGAACCAGTTCTTAAGGTTATTCAAAATTTAAATACGAGTTGTTTGGTATTCAGTTTAAGCAATTCCATCATACTTTTGCTCATTGTCGACAATTTATCAGGCTCGTAGGCCTTGTTTGCTAACAGTTGATAATATAAAAAGTGATTTTAAACCTTTCTTGTTTCTGTGGATGCAGTGGAGTATGGGCTGA

mRNA sequence

ATGGGGCAATGCGTAAGTTGCGTGGGCGAAGGCGAAAAGCAACAGAGAAAAGAGGAACAAAGATTGGCCTCCATGGAAGCTCGCGCCAAAGCTGCTGAAGCTGCTCACAGGAGGCAAGAAGATTTTGAAAAATCTGCTGCAGGAAGAGCGGCACGCGCTCAGATGGCAGCAAATGCAAAGCAATCTGCTAACACTAACAAGGGAGAACCAGTTCTTAAGTGGAGTATGGGCTGA

Coding sequence (CDS)

ATGGGGCAATGCGTAAGTTGCGTGGGCGAAGGCGAAAAGCAACAGAGAAAAGAGGAACAAAGATTGGCCTCCATGGAAGCTCGCGCCAAAGCTGCTGAAGCTGCTCACAGGAGGCAAGAAGATTTTGAAAAATCTGCTGCAGGAAGAGCGGCACGCGCTCAGATGGCAGCAAATGCAAAGCAATCTGCTAACACTAACAAGGGAGAACCAGTTCTTAAGTGGAGTATGGGCTGA

Protein sequence

MGQCVSCVGEGEKQQRKEEQRLASMEARAKAAEAAHRRQEDFEKSAAGRAARAQMAANAKQSANTNKGEPVLKWSMG
Homology
[Close]
BLAST of Sed0024574 vs. NCBI nr
Match: XP_038886006.1 (uncharacterized protein LOC120076314 [Benincasa hispida])

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 70/77 (90.91%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 1  MGQCVSCVGEGEKQQRKEEQRLASMEARAKAAEAAHRRQEDFEKSAAGRAARAQMAANAK 60
          MGQCVSC+ EGEKQQRKEE+RLAS+EARAKAAEAA RRQE+FEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLKWSMG 78
          QSANTNKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]
BLAST of Sed0024574 vs. NCBI nr
Match: XP_008444542.1 (PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 2.9e-26
Identity = 69/77 (89.61%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 1  MGQCVSCVGEGEKQQRKEEQRLASMEARAKAAEAAHRRQEDFEKSAAGRAARAQMAANAK 60
          MGQCVSC+ EG+KQQRKEE+RLAS+EARAKAAEAA RRQE+FEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLKWSMG 78
          QSANTNKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]
BLAST of Sed0024574 vs. NCBI nr
Match: KAG7020610.1 (hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.6 bits (309), Expect = 7.2e-25
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MGQCVSCVGEGEKQQRKEEQRLASMEARAKAAEAAHRRQEDFEKSAAGRAARAQMAANAK 60
          MGQCVSC+ E +KQQRKEE+RLAS+EAR+KAAEAA RRQE+FEKSAAGRAARAQMAANAK
Sbjct: 20 MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 79

Query: 61 QSANTNKGEPVLKWSMG 78
          QSAN NKGEPVLKWSMG
Sbjct: 80 QSANANKGEPVLKWSMG 96

[Close]
BLAST of Sed0024574 vs. NCBI nr
Match: XP_022951067.1 (uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_022951068.1 uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_023002620.1 uncharacterized protein LOC111496424 [Cucurbita maxima] >XP_023002621.1 uncharacterized protein LOC111496424 [Cucurbita maxima] >XP_023537497.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >XP_023537499.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >XP_023537500.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >KAG6585707.1 hypothetical protein SDJN03_18440, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 7.2e-25
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MGQCVSCVGEGEKQQRKEEQRLASMEARAKAAEAAHRRQEDFEKSAAGRAARAQMAANAK 60
          MGQCVSC+ E +KQQRKEE+RLAS+EAR+KAAEAA RRQE+FEKSAAGRAARAQMAANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANTNKGEPVLKWSMG 78
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]
BLAST of Sed0024574 vs. NCBI nr
Match: XP_022131511.1 (uncharacterized protein LOC111004688 [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-24
Identity = 65/77 (84.42%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 1  MGQCVSCVGEGEKQQRKEEQRLASMEARAKAAEAAHRRQEDFEKSAAGRAARAQMAANAK 60
          MGQC+ C+ EG+KQQR+EE+RL+S+EARAKAAEAA RRQE+FEKSAAGRAARAQMAANAK
Sbjct: 1  MGQCLGCLDEGQKQQRQEEERLSSVEARAKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANTNKGEPVLKWSMG 78
          QSANTN+GEPVLKWSMG
Sbjct: 61 QSANTNRGEPVLKWSMG 77

[Close]
BLAST of Sed0024574 vs. ExPASy TrEMBL
Match: A0A1S3BAJ0 (uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 69/77 (89.61%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 1  MGQCVSCVGEGEKQQRKEEQRLASMEARAKAAEAAHRRQEDFEKSAAGRAARAQMAANAK 60
          MGQCVSC+ EG+KQQRKEE+RLAS+EARAKAAEAA RRQE+FEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLKWSMG 78
          QSANTNKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]
BLAST of Sed0024574 vs. ExPASy TrEMBL
Match: A0A6J1KLT2 (uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.5e-25
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MGQCVSCVGEGEKQQRKEEQRLASMEARAKAAEAAHRRQEDFEKSAAGRAARAQMAANAK 60
          MGQCVSC+ E +KQQRKEE+RLAS+EAR+KAAEAA RRQE+FEKSAAGRAARAQMAANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANTNKGEPVLKWSMG 78
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]
BLAST of Sed0024574 vs. ExPASy TrEMBL
Match: A0A6J1GGM5 (uncharacterized protein LOC111454028 OS=Cucurbita moschata OX=3662 GN=LOC111454028 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.5e-25
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MGQCVSCVGEGEKQQRKEEQRLASMEARAKAAEAAHRRQEDFEKSAAGRAARAQMAANAK 60
          MGQCVSC+ E +KQQRKEE+RLAS+EAR+KAAEAA RRQE+FEKSAAGRAARAQMAANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANTNKGEPVLKWSMG 78
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]
BLAST of Sed0024574 vs. ExPASy TrEMBL
Match: A0A6J1K846 (uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.0e-25
Identity = 65/77 (84.42%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 1  MGQCVSCVGEGEKQQRKEEQRLASMEARAKAAEAAHRRQEDFEKSAAGRAARAQMAANAK 60
          MGQC SC+ EG++Q+RKEE+RLAS+EARAKAAEAA +RQE+FEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLKWSMG 78
          QSANTNKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]
BLAST of Sed0024574 vs. ExPASy TrEMBL
Match: A0A6J1BPP8 (uncharacterized protein LOC111004688 OS=Momordica charantia OX=3673 GN=LOC111004688 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.0e-25
Identity = 65/77 (84.42%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 1  MGQCVSCVGEGEKQQRKEEQRLASMEARAKAAEAAHRRQEDFEKSAAGRAARAQMAANAK 60
          MGQC+ C+ EG+KQQR+EE+RL+S+EARAKAAEAA RRQE+FEKSAAGRAARAQMAANAK
Sbjct: 1  MGQCLGCLDEGQKQQRQEEERLSSVEARAKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANTNKGEPVLKWSMG 78
          QSANTN+GEPVLKWSMG
Sbjct: 61 QSANTNRGEPVLKWSMG 77

[Close]
BLAST of Sed0024574 vs. TAIR 10
Match: AT5G63905.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 94.0 bits (232), Expect = 5.7e-20
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 0 

Query: 4  CVSCVGEGEKQQRKEEQRLASMEARAKAAEAAHRRQEDFEKSAAGRAARAQMAANAKQSA 63
          C SC    +K+QRKEE+R AS EARAKAAEAA RR+E F+KSAAGRAA+AQ+   AKQSA
Sbjct: 3  CFSCFDGTQKEQRKEEERQASAEARAKAAEAAQRRKEQFDKSAAGRAAQAQLQQMAKQSA 62

Query: 64 NTNKGEPVLKWSM 77
          NTNKGEPVLKW M
Sbjct: 63 NTNKGEPVLKWQM 75

The following BLAST results are available for this feature:
BLAST of Sed0024574 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038886006.11.3e-2690.91uncharacterized protein LOC120076314 [Benincasa hispida][more]
XP_008444542.12.9e-2689.61PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo][more]
KAG7020610.17.2e-2587.01hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022951067.17.2e-2587.01uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_022951068.1 unchar... [more]
XP_022131511.11.2e-2484.42uncharacterized protein LOC111004688 [Momordica charantia][more]
BLAST of Sed0024574 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0024574 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BAJ01.4e-2689.61uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=... [more]
A0A6J1KLT23.5e-2587.01uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424... [more]
A0A6J1GGM53.5e-2587.01uncharacterized protein LOC111454028 OS=Cucurbita moschata OX=3662 GN=LOC1114540... [more]
A0A6J1K8466.0e-2584.42uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013... [more]
A0A6J1BPP86.0e-2584.42uncharacterized protein LOC111004688 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
BLAST of Sed0024574 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G63905.15.7e-2072.60unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..47
NoneNo IPR availablePANTHERPTHR36813:SF1TRANSMEMBRANE PROTEINcoord: 1..77
NoneNo IPR availablePANTHERPTHR36813TRANSMEMBRANE PROTEINcoord: 1..77
IPR031632Small VCP/p97-interacting proteinPFAMPF15811SVIPcoord: 1..73
e-value: 1.4E-11
score: 44.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0024574.1Sed0024574.1mRNA