Sed0024545 (gene) Chayote v1

Overview
NameSed0024545
Typegene
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L30-like
LocationLG01: 31918819 .. 31922091 (-)
RNA-Seq ExpressionSed0024545
SyntenySed0024545
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAAAGTAGAGCCCATTATTAGAAAAGCCCAATTATACACGAACTGGGCCGAAGAAAAAGCCCGGTTCTAATGACCTAGCTCTAAAATGATAACCCTAACCCTAACACCCACTTCCGTCTTCTTCATTCCCGCTACCAGTGGAAAAGCTTCAGCACAAGGTAAGGTAAGGTAAGGTAATGTGTGATTCAAACCCTAATTCGAAACATTTTCCCCACAAGAGTTCGAAGATTTTGATATTTTTTTCATCTTTGACCCTTTCTGTTTCGTCTTCATCTTAAAGGTTTTTGCACACCCTTTGAGCAGCAACAATGGCGCCGACGAAGAAGACCGTAAGTATCACTCTAACAGCCCATGAATTTCGCTTTTCCAATCATTTTAGGGATATTAGTTTTGATTATCTGTGGGATTGCATTTGCAGAAGAAGACTCATGAGAGCATTAACAACAGGCTAGCCCTTGTGGTGAAGAGCGGCAAGTTCACGCTGGGCTATAAAACCGTCCTTCGCACCATCCGCAACTCCAAAGGTCTTCCTTTGTCGCTTCCATATTCGATAAATCTTGTTGCTTATTACCTGCCTGTGTGCTTTTGACACTTTTGTGTTTTTGGATCTGTGAAAATACAGGAAAGCTTATTATTCTATCCAACAACTGCCCGCCTCTGCGTAAATCCGAAATCGAGTACTACGCAATGCTTGCTAAAGTTGGGGTTCACCATTACAATGGAAGTAAGTGAAGTCATTACTCTGCCTTGTTACTTTGTTGTTTATATGTCCAAGTTGCATGCCGCATGATGTTCTGATTTTTTATATTTAGAGCATTGTCGGCAAGATTTCCGATATATGATTGTAGTACATTGCCTTTCATTATTTTAGAAAAAAATAAAATAGCTATTAAAGTTTGCTCAATTAATTCCTAATTAGAGGTAGCCTATTGCAAGTGTCGGTTTATTGTATATTTCAGTAAGTTGATCAGCTAGGTATGGGCTGAATAATCTGATTCAGAGTGCTATAATTTGCTTTTCCATTATTAAAAAAAAATGAATGTAACATCCGGTATTTCTTCTTTATTGAAGTATTTCTTGAATAGGGTCAAGGTTCTTTCACAATTTCCTATTGATTGGCTTGTCTTATTGAAGGAAATAGGTGGGTTGCTTATCTTACATTTGTAGTGGTTCGCTTTTAACATATAGAACTGATGCGGGAGAGCAAGTATTAACTTGCATTTCACCTGTAACCTGTTCAGTACGTCTTTAGTTTTAAGTTTTGTCAATAAATTAGTGGGTTTATGTTCGGTCAATCTGCATTACCTCCTCCTATGTATTATTTGTACGATTATTTGTATATTTTGTTTCATCTATTTTATTTAAGATTTTGTTATTTGGGTTTATAATTAGGTAACGTTGATCTTGGAACTGCTTGTGGCAAGTATTTCCGTGTCTCATGCCTCAGCATTATTGACCCAGGTACATCATATTTCTTTATTTGTTTTCGAAATTTCATGTTTATTTTATATCTATGGATCTTTAATTTCGACCATCTTGTTCTAATTCCTGATGTCTGTAAAAAAAAAAAGTTTGTATTATATTCTTTTTATAAGTATTTAACAAGAACTTGATAAAGTCACATGTGTTTTTCATTGACATAATGTGTTAATATCTTTCTGCGAGTAGGTATCTTGTGGAAAGTGTTTGAGAGAATACATTCAATTACTAAGGCCTTATTTTTTTTTTTTTAACTTTTTGGTGTTTTGTTTTGGGTTTTTGAAATTTTAAGCTTACAACTACTACTCCAACTCATTACTTTGGTATCTTCATCTTACTTATGTTTTTAAATATCAAACCAAAGTTTGTACCAAAAACATAAACCAAATTTGAAAATCCAAACAATTATTAAATGGGCCTAAGGTGTTGAGTTTTAAAGCATGTTTCAGTTTTTGTTAAACGATTATTAGAGAAGTTATGCCAAGGGCTTAAACAGTGTTAAGCGTAGTTTTCTTGCCTAATTCTCTTTACAAGTGAAGTTGAAATTTTGAGTTGTCTTAAAAATACTTTTCTATTAAGCCCTTGGCATAACTTCTTGAATTCCTGAAATTTCAAGTGCATTCCATTTTGAAAGTTGGCCCTAACATGAAACATCTAGTAGTTAAATTGAAGAGAAATATTTTTTCAATTTTGAGTTGCCTAAAAAAATACGTTTTTATTATGCCTTTCTTTTGTTTTTTGAAATTGAGTTAGTTTTTTTTTTTCAATTTCCTTACAAAAGTTTTCAACTTTTCATCTTCTCCACCATCCAGAAACAAAAATAAGTTTTTGAAAATAACTAGCCCCGTTTGATAAATTTAACCTCCGTTTGGTAACAATTTGGTATTTGTTTTTTTGTTGATGGTTTTTTATCATTTATTTTTTAACTTAAGCTTGTTTTCTCTAAAATTCTTTACAAAGTGTTTTATCTTTCTTAATTGTTTGAATCTTAACCTAACTCAAAAAATCAAAACAAGGTTTTTGAAGCCATATCTAAAGTTTTCAAAATTTGGTTTGGTTTTTAAAAACATGGTAGAGATGTCTAACAAAGGCCATATGCTAAATGGCATCTATAAGGGCCTTAGTTTTCTAAACTTTTCTTTGTAAACATAGTTAAACGGTAGATAGAAAACATGGAAATCCATAGTTGAAAAATGAAAATAGTATATACAGGCTTTAATTTAAACAAAAATAAAACGAATTGATTATTCTTTTAATAGTACGTTTTTACCGAAGTTCTGCCTTTTCTTTTCTTCTCTTCTCTTGTCCAGGCGATTCTGATATTATCAAATCACTTCCCGGTGATCAGTGATCATGCTCTGAAGATAGCTGTCTTCATTGTGGTGTCTTTTGGCTTCGGCAAACGGTAGAATTGATTTTTTTTTTCAATGTCATGCAGTAAAAATTTTATGTTGATAAACCAGATTTTGTTGGAGACTTTAAGGTTTTGTTTAGTTGAGATGGTCGAATGTTCAAAGTAGATTTATGTCTACTATTTTTTTATGCCCTAAAGAACTCTAAAATTTTCTTGCCTTCTTACATTAGCAATGCAATTCCGTTTTTAGTTACAGTTTTATTTTTAGTGCCTTAGAAGTGAACCCCATCTTTGGCGTTGGAACATGCCTTAGAATTTATGTAATGTACTTTCTCTTCAATTTTGATTGTATTACTAGTGGTATTATTGAGGAAATGTAAGCTCGAGTATGATGATTAAAATCCTGGCTTTTTGCTCTGCAAATTTGCATATTTGAC

mRNA sequence

GGAAAAAGTAGAGCCCATTATTAGAAAAGCCCAATTATACACGAACTGGGCCGAAGAAAAAGCCCGGTTCTAATGACCTAGCTCTAAAATGATAACCCTAACCCTAACACCCACTTCCGTCTTCTTCATTCCCGCTACCAGTGGAAAAGCTTCAGCACAAGGTAAGGTTTTTGCACACCCTTTGAGCAGCAACAATGGCGCCGACGAAGAAGACCAAGAAGACTCATGAGAGCATTAACAACAGGCTAGCCCTTGTGGTGAAGAGCGGCAAGTTCACGCTGGGCTATAAAACCGTCCTTCGCACCATCCGCAACTCCAAAGGAAAGCTTATTATTCTATCCAACAACTGCCCGCCTCTGCGTAAATCCGAAATCGAGTACTACGCAATGCTTGCTAAAGTTGGGGTTCACCATTACAATGGAAGTAACGTTGATCTTGGAACTGCTTGTGGCAAGTATTTCCGTGTCTCATGCCTCAGCATTATTGACCCAGGCGATTCTGATATTATCAAATCACTTCCCGGTGATCAGTGATCATGCTCTGAAGATAGCTGTCTTCATTGTGGTGTCTTTTGGCTTCGGCAAACGGTAGAATTGATTTTTTTTTTCAATGTCATGCAGTAAAAATTTTATGTTGATAAACCAGATTTTGTTGGAGACTTTAAGGTTTTGTTTAGTTGAGATGGTCGAATGTTCAAAGTAGATTTATGTCTACTATTTTTTTATGCCCTAAAGAACTCTAAAATTTTCTTGCCTTCTTACATTAGCAATGCAATTCCGTTTTTAGTTACAGTTTTATTTTTAGTGCCTTAGAAGTGAACCCCATCTTTGGCGTTGGAACATGCCTTAGAATTTATGTAATGTACTTTCTCTTCAATTTTGATTGTATTACTAGTGGTATTATTGAGGAAATGTAAGCTCGAGTATGATGATTAAAATCCTGGCTTTTTGCTCTGCAAATTTGCATATTTGAC

Coding sequence (CDS)

ATGGCGCCGACGAAGAAGACCAAGAAGACTCATGAGAGCATTAACAACAGGCTAGCCCTTGTGGTGAAGAGCGGCAAGTTCACGCTGGGCTATAAAACCGTCCTTCGCACCATCCGCAACTCCAAAGGAAAGCTTATTATTCTATCCAACAACTGCCCGCCTCTGCGTAAATCCGAAATCGAGTACTACGCAATGCTTGCTAAAGTTGGGGTTCACCATTACAATGGAAGTAACGTTGATCTTGGAACTGCTTGTGGCAAGTATTTCCGTGTCTCATGCCTCAGCATTATTGACCCAGGCGATTCTGATATTATCAAATCACTTCCCGGTGATCAGTGA

Protein sequence

MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ
Homology
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BLAST of Sed0024545 vs. NCBI nr
Match: XP_008460497.1 (PREDICTED: 60S ribosomal protein L30-like [Cucumis melo] >XP_022939971.1 60S ribosomal protein L30-like [Cucurbita moschata] >XP_022992865.1 60S ribosomal protein L30-like [Cucurbita maxima] >XP_023549693.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >XP_023549694.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >XP_038906736.1 60S ribosomal protein L30-like [Benincasa hispida] >KAA0062391.1 60S ribosomal protein L30-like [Cucumis melo var. makuwa] >KAG6579016.1 60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016539.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma] >TYK26589.1 60S ribosomal protein L30-like [Cucumis melo var. makuwa])

HSP 1 Score: 221.1 bits (562), Expect = 4.9e-54
Identity = 106/112 (94.64%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           MAP KKTKKTHESINNRLALV+KSGK+TLGYKTVLRTIR+SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Sed0024545 vs. NCBI nr
Match: XP_004140311.1 (60S ribosomal protein L30 [Cucumis sativus] >KGN51019.1 hypothetical protein Csa_008795 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 6.3e-54
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           MAP KKTKKTHESINNRLALV+KSGK+TLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Sed0024545 vs. NCBI nr
Match: XP_022141723.1 (60S ribosomal protein L30-like [Momordica charantia])

HSP 1 Score: 219.5 bits (558), Expect = 1.4e-53
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           MA  KKTKKTHESINNRLALV+KSGK+TLGYKTVLRTIR+SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Sed0024545 vs. NCBI nr
Match: KAG6602049.1 (60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.8 bits (556), Expect = 2.4e-53
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           MAP KKTKKTHESINNRLALV+KSGK+TLGYKTVLRTIR+SKGKLIILSNNCPPLRKSEI
Sbjct: 34  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 93

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP +Q
Sbjct: 94  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 145

[Close]
BLAST of Sed0024545 vs. NCBI nr
Match: XP_022952815.1 (60S ribosomal protein L30-like [Cucurbita moschata] >XP_023525455.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >KAG7032743.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.8 bits (556), Expect = 2.4e-53
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           MAP KKTKKTHESINNRLALV+KSGK+TLGYKTVLRTIR+SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP +Q
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 112

[Close]
BLAST of Sed0024545 vs. ExPASy Swiss-Prot
Match: O49884 (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-52
Identity = 96/112 (85.71%), Postives = 108/112 (96.43%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           M   KKTKKTHESINNRLALV+KSGK+TLGYKTVL+++R+SKGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGDQ 112

[Close]
BLAST of Sed0024545 vs. ExPASy Swiss-Prot
Match: Q9M5M6 (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 6.8e-51
Identity = 95/111 (85.59%), Postives = 105/111 (94.59%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           M   KKTKKTHESIN+RLALV+KSGKFTLGYKTVL ++R++KGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYFRV CLSIID GDSDIIKS+PGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGD 111

[Close]
BLAST of Sed0024545 vs. ExPASy Swiss-Prot
Match: Q8VZ19 (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-50
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALV+KSGK+TLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKVGVHHYNG+NVDLGTACGKYFRVSCLSI+DPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112

[Close]
BLAST of Sed0024545 vs. ExPASy Swiss-Prot
Match: Q9C8F7 (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.4e-50
Identity = 92/112 (82.14%), Postives = 107/112 (95.54%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALV+KSGK+TLGYK+VL+++R+SKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKVGVHHYN +NVDLGTACGKYFRVSCLSI+DPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Sed0024545 vs. ExPASy Swiss-Prot
Match: Q9LSA3 (60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 3.7e-49
Identity = 90/112 (80.36%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALV+KSGK+TLGYK+VL+++R+SKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKVGVH YNG+NVDLGTACGKYFRVSCLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112

[Close]
BLAST of Sed0024545 vs. ExPASy TrEMBL
Match: A0A5D3DSZ7 (60S ribosomal protein L30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002180 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.3e-54
Identity = 106/112 (94.64%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           MAP KKTKKTHESINNRLALV+KSGK+TLGYKTVLRTIR+SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Sed0024545 vs. ExPASy TrEMBL
Match: A0A6J1JWW8 (60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111489070 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.3e-54
Identity = 106/112 (94.64%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           MAP KKTKKTHESINNRLALV+KSGK+TLGYKTVLRTIR+SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Sed0024545 vs. ExPASy TrEMBL
Match: A0A6J1FH91 (60S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111445673 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.3e-54
Identity = 106/112 (94.64%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           MAP KKTKKTHESINNRLALV+KSGK+TLGYKTVLRTIR+SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Sed0024545 vs. ExPASy TrEMBL
Match: A0A1S3CCQ4 (60S ribosomal protein L30-like OS=Cucumis melo OX=3656 GN=LOC103499296 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.3e-54
Identity = 106/112 (94.64%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           MAP KKTKKTHESINNRLALV+KSGK+TLGYKTVLRTIR+SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Sed0024545 vs. ExPASy TrEMBL
Match: A0A0A0KQ98 (Ribosomal_L7Ae domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G409620 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.1e-54
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           MAP KKTKKTHESINNRLALV+KSGK+TLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Sed0024545 vs. TAIR 10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-51
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALV+KSGK+TLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKVGVHHYNG+NVDLGTACGKYFRVSCLSI+DPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112

[Close]
BLAST of Sed0024545 vs. TAIR 10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.7 bits (504), Expect = 2.4e-51
Identity = 92/112 (82.14%), Postives = 107/112 (95.54%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALV+KSGK+TLGYK+VL+++R+SKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKVGVHHYN +NVDLGTACGKYFRVSCLSI+DPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Sed0024545 vs. TAIR 10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 195.3 bits (495), Expect = 2.7e-50
Identity = 90/112 (80.36%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MAPTKKTKKTHESINNRLALVVKSGKFTLGYKTVLRTIRNSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALV+KSGK+TLGYK+VL+++R+SKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKVGVH YNG+NVDLGTACGKYFRVSCLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112

The following BLAST results are available for this feature:
BLAST of Sed0024545 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460497.14.9e-5494.64PREDICTED: 60S ribosomal protein L30-like [Cucumis melo] >XP_022939971.1 60S rib... [more]
XP_004140311.16.3e-5494.6460S ribosomal protein L30 [Cucumis sativus] >KGN51019.1 hypothetical protein Csa... [more]
XP_022141723.11.4e-5395.5460S ribosomal protein L30-like [Momordica charantia][more]
KAG6602049.12.4e-5394.6460S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022952815.12.4e-5394.6460S ribosomal protein L30-like [Cucurbita moschata] >XP_023525455.1 60S ribosoma... [more]
BLAST of Sed0024545 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O498841.2e-5285.7160S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1[more]
Q9M5M66.8e-5185.5960S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1[more]
Q8VZ191.5e-5082.1460S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1[more]
Q9C8F73.4e-5082.14Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P... [more]
Q9LSA33.7e-4980.3660S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1[more]
BLAST of Sed0024545 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DSZ72.3e-5494.6460S ribosomal protein L30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6J1JWW82.3e-5494.6460S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111489070 PE=3 ... [more]
A0A6J1FH912.3e-5494.6460S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111445673 PE=... [more]
A0A1S3CCQ42.3e-5494.6460S ribosomal protein L30-like OS=Cucumis melo OX=3656 GN=LOC103499296 PE=3 SV=1[more]
A0A0A0KQ983.1e-5494.64Ribosomal_L7Ae domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G409... [more]
BLAST of Sed0024545 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G77940.11.1e-5182.14Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G36240.12.4e-5182.14Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT3G18740.12.7e-5080.36Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 2..107
e-value: 2.0E-52
score: 177.3
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 13..106
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 13..105
e-value: 2.0E-22
score: 78.7
IPR039109Ribosomal protein L30/YlxQPANTHERPTHR11449RIBOSOMAL PROTEIN L30coord: 1..112
NoneNo IPR availablePANTHERPTHR11449:SF2660S RIBOSOMAL PROTEIN L30-LIKEcoord: 1..112
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00709RIBOSOMAL_L30E_1coord: 24..48
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00993RIBOSOMAL_L30E_2coord: 80..100
IPR000231Ribosomal protein L30eHAMAPMF_00481Ribosomal_L30ecoord: 12..109
score: 21.449865

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0024545.1Sed0024545.1mRNA
Sed0024545.2Sed0024545.2mRNA
Sed0024545.3Sed0024545.3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome