Sed0024537 (gene) Chayote v1

Overview


Name	Sed0024537
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Eukaryotic translation initiation factor 5A
Location	LG05: 31291390 .. 31293861 (+)
RNA-Seq Expression	Sed0024537
Synteny	Sed0024537

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAAAATAAGAGAAAATCAGAAACCCTAATTGGCGTATACGTGTCCGGTTAAAACGCGATGGTATAAATAGGTATCGTCCTCTAGAATCGTACTCTTCTCTCCTTCCGCTTCCACCGAGATCGTAACACTGTAGAACACAGAAGAAGAGAAGCTGTAGAAGAAGAAGAAGAACGAAATCTTCAGCCATGTCCGACGAGGAGCACCACTTCGAATCCAAGGCCGATGCCGGAGCCTCCAAAACCTACCCGCAGCAGGCCGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTCAGTTTGGTCGATTTCTTGTTTTTGCTGCGATGATTTGATTTTCGTGTTCGGATGATGTTTGATTTGGCTTCTTTTTTTTTTGGATCGGGCGTTTTAGATCTTAGGTTGATTTTGAGAGTTATCTGTATCCTGATCATCGATTTTATGTGATTTGTGTGCGATTTACTGTATATCATGGCGGATGTGGACGTAGATTTTTTTTTATTTTTTTGTTCTTTCTGGTTTGAGCGTTGGATTAGGGAAAATAGATGAATCTGATGTTGAAATTAATCGTTATTTGCGAGAGTTTTCAGATTTCGTGATTGTGATTTCGAGAGAATCATGATGTTCTGGTCAACGTTTCAAATCTGCTAGTGTTTACAGTGTTGTTTTAATTGAATCGTGATTTTTTTCCTGGAGAAGACAATTTTCAGTGTTGTATTTCCATATTTGGTACTTTCTTGTTCTAAGCTTCATCATGCGTTTATGTTCGTTGAGACTGTTATTGGTGCCTGTCAATAATTAGTGGAAAAAAGTATATCTGTGGCATCTAAAAGTTGAATTGGTTAATTCTGCTTAGCTATACACTTGTTTCCGTTTAAGTATGTAAGCATATTTATTTAGTCTTCCTTTTTGGAAGCGTACTTTCTAGGCAACATTTATGAGACTTGCTTTTCCTTCTTAAAAAATATATTTTTTTTCTAATGCAGGTTGTTGAGGTTTCGACTTCTAAGACCGGCAAGCACGGACATGCGAAGTGTCACTTTGTTGGAATTGACATCTTCACTAACAAGAAGCTCGAAGATATTGTTCCATCATCCCACAATTGTGATGTAAGGAGTCTGTTTTTCAGCTTGCAAATCATTTTGCTGTATTTGATTTATCAGTCCCACTAATGGTTTTTTTTTTTTTTAATGTTTTGTAGGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTAATTTGGTCACATGAGCTTGTTTTATTTGATTTGGTTTGTAGACTTCAAGAAACTTGTCTGTACTTTTTTGTTATGAATGTTCCTTTTGGTATCTCGATTTCTTTGGAAGTCTATGCATGTTTCACTGTGTTTCTATAATCAATTGTAGATTACTTGCATTCATTTATATGGGGTAGGAAGTCTTTTAATTGGTTAGATGTTCTTTTCAGATGGGGAACCTGGAAAAAAAATGAACAATATTAGTGTGACGGTTTTATAAGGAATTGTATAAGGATGCAATGAATCGTTCGTGTATAGTGCTTCGTGTATAGTGCTTCGTGTAAAGCTTATTTCATTTATTGGAAGATGTTTTTCTTTTGCTGCAGGTCAGTCTTTTAACTGACAATGGCAACACCAAGGATGATTTAAGGCTTCCAACTGATGATAACCTGCTCACTCAGGTAAACGCTCTTATAGACCCTTATTATGGGTTATCTGATTCTCAGTGCACTTGACACAGTTGTGTCTATTTACAAAATTGAAGTTATTCGAGGCTTGTGCAGACTAAATTCTTTAATTTTGTATATCGTGTAGCTCTTTTTTACAGGGAACCCGATTCCTTCTGTTTCCTTGTATATTATTCCATGTTCTTAAGATATTGTGAATATGATCGTATGGTTTTATTCTTGATATTTTTCTGTTTTTGTGATTAGTTAGAAGAATTTATGAACTGAAAGGATATGTTCAATCTATGATGACCATCTATTTAAGATGATTCGTACTGGACAATTGCACATATAAAAAGAATTCTGTTTCTGTTATTTGTATCTGCAGATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTGGTGTCGGTGATGTCTGCCATGGGAGAGGAACAGATTAATGCCCTGAAGGATATCGGGCCGAAGAATTAGCTTCGAAACGAAGTTGAAGTTGTGGCCGAATTCCTCGACTGAATCTTTTAAGTGATGGTTATAATTAATTAGCCGAGACTTTGTATCTGTGAACCTCTTTCAGTCTTCTCCCTATCTTGTTTCTGGCCCCCAGGGGATGTGATGTATGACTGGTTCGTGCATCGTTACTGTGTTTTATGCTGTGGTATTTTATGATGATGATATTGGTGTAATGTTATTGGGTTTTTGGATGCTTGCTTTGATAAATCGAAGTGAAATAATTTTTGCCGATGC

mRNA sequence

GAGAAAATAAGAGAAAATCAGAAACCCTAATTGGCGTATACGTGTCCGGTTAAAACGCGATGGTATAAATAGGTATCGTCCTCTAGAATCGTACTCTTCTCTCCTTCCGCTTCCACCGAGATCGTAACACTGTAGAACACAGAAGAAGAGAAGCTGTAGAAGAAGAAGAAGAACGAAATCTTCAGCCATGTCCGACGAGGAGCACCACTTCGAATCCAAGGCCGATGCCGGAGCCTCCAAAACCTACCCGCAGCAGGCCGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTTGTTGAGGTTTCGACTTCTAAGACCGGCAAGCACGGACATGCGAAGTGTCACTTTGTTGGAATTGACATCTTCACTAACAAGAAGCTCGAAGATATTGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTCAGTCTTTTAACTGACAATGGCAACACCAAGGATGATTTAAGGCTTCCAACTGATGATAACCTGCTCACTCAGATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTGGTGTCGGTGATGTCTGCCATGGGAGAGGAACAGATTAATGCCCTGAAGGATATCGGGCCGAAGAATTAGCTTCGAAACGAAGTTGAAGTTGTGGCCGAATTCCTCGACTGAATCTTTTAAGTGATGGTTATAATTAATTAGCCGAGACTTTGTATCTGTGAACCTCTTTCAGTCTTCTCCCTATCTTGTTTCTGGCCCCCAGGGGATGTGATGTATGACTGGTTCGTGCATCGTTACTGTGTTTTATGCTGTGGTATTTTATGATGATGATATTGGTGTAATGTTATTGGGTTTTTGGATGCTTGCTTTGATAAATCGAAGTGAAATAATTTTTGCCGATGC

Coding sequence (CDS)

ATGTCCGACGAGGAGCACCACTTCGAATCCAAGGCCGATGCCGGAGCCTCCAAAACCTACCCGCAGCAGGCCGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTTGTTGAGGTTTCGACTTCTAAGACCGGCAAGCACGGACATGCGAAGTGTCACTTTGTTGGAATTGACATCTTCACTAACAAGAAGCTCGAAGATATTGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTCAGTCTTTTAACTGACAATGGCAACACCAAGGATGATTTAAGGCTTCCAACTGATGATAACCTGCTCACTCAGATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTGGTGTCGGTGATGTCTGCCATGGGAGAGGAACAGATTAATGCCCTGAAGGATATCGGGCCGAAGAATTAG

Protein sequence

MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN

Homology

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BLAST of Sed0024537 vs. NCBI nr
Match: KAF4370447.1 (hypothetical protein F8388_016184 [Cannabis sativa])

HSP 1 Score: 322.8 bits (826), Expect = 1.7e-84
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 20  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 79

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 80  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 139

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 161
           DNLL+QIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN
Sbjct: 140 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 179

[Close]

BLAST of Sed0024537 vs. NCBI nr
Match: XP_030478581.1 (eukaryotic translation initiation factor 5A-4 [Cannabis sativa] >KAF4390105.1 hypothetical protein G4B88_005023 [Cannabis sativa])

HSP 1 Score: 322.8 bits (826), Expect = 1.7e-84
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 161
           DNLL+QIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN
Sbjct: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 160

[Close]

BLAST of Sed0024537 vs. NCBI nr
Match: PNX72413.1 (eukaryotic translation initiation factor 5a-2-like protein [Trifolium pratense])

HSP 1 Score: 322.8 bits (826), Expect = 1.7e-84
Identity = 156/160 (97.50%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDL+LPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 161
           D+LLTQIKDGFAEGKDLVVSVMSAMGEEQINALKD+GPKN
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDVGPKN 160

[Close]

BLAST of Sed0024537 vs. NCBI nr
Match: XP_022133256.1 (eukaryotic translation initiation factor 5A-2 [Momordica charantia])

HSP 1 Score: 320.9 bits (821), Expect = 6.4e-84
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 161
           DNLLTQIKDGFAEGKDLVVSVMSAMGEEQI ALKDIGPKN
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]

BLAST of Sed0024537 vs. NCBI nr
Match: PON41654.1 (Translation elongation factor [Trema orientale])

HSP 1 Score: 320.9 bits (821), Expect = 6.4e-84
Identity = 157/160 (98.12%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 161
           DNLLTQIKDGFAEGKDLVVSVMSAMGEEQI ALKDIGPKN
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]

BLAST of Sed0024537 vs. ExPASy Swiss-Prot
Match: P56336 (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum OX=4113 GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 8.7e-84
Identity = 152/159 (95.60%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTYPQQAGTIRK+GYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 160
           D+LL+QIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK
Sbjct: 121 DSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

[Close]

BLAST of Sed0024537 vs. ExPASy Swiss-Prot
Match: Q9AXQ4 (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.1e-83
Identity = 152/159 (95.60%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 160
           +NLL+ IKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK
Sbjct: 121 ENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

[Close]

BLAST of Sed0024537 vs. ExPASy Swiss-Prot
Match: P24922 (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 2.5e-83
Identity = 152/159 (95.60%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTYPQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 160
           DNLLTQIKDGFAEGKDLVVSVMSAMGEEQI ALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of Sed0024537 vs. ExPASy Swiss-Prot
Match: Q9AXJ4 (Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2)

HSP 1 Score: 308.5 bits (789), Expect = 4.3e-83
Identity = 149/160 (93.12%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKNRPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+ GNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 161
           +NLL+QIKDGFAEGKDLVVSVMSAMGEE+I +LKDIGPKN
Sbjct: 121 ENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160

[Close]

BLAST of Sed0024537 vs. ExPASy Swiss-Prot
Match: P69039 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.1e-82
Identity = 148/159 (93.08%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 160
           DNLL  IKDGFAEGKDLV+SVMSAMGEEQI  +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]

BLAST of Sed0024537 vs. ExPASy TrEMBL
Match: A0A2K3L1L0 (Eukaryotic translation initiation factor 5A OS=Trifolium pratense OX=57577 GN=L195_g028303 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 8.2e-85
Identity = 156/160 (97.50%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDL+LPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 161
           D+LLTQIKDGFAEGKDLVVSVMSAMGEEQINALKD+GPKN
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDVGPKN 160

[Close]

BLAST of Sed0024537 vs. ExPASy TrEMBL
Match: A0A7J6FIK2 (Eukaryotic translation initiation factor 5A OS=Cannabis sativa OX=3483 GN=F8388_016184 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 8.2e-85
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 20  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 79

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 80  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 139

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 161
           DNLL+QIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN
Sbjct: 140 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 179

[Close]

BLAST of Sed0024537 vs. ExPASy TrEMBL
Match: A0A7J6H4T6 (Eukaryotic translation initiation factor 5A OS=Cannabis sativa OX=3483 GN=G4B88_005023 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 8.2e-85
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 161
           DNLL+QIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN
Sbjct: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 160

[Close]

BLAST of Sed0024537 vs. ExPASy TrEMBL
Match: A0A803QB05 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 8.2e-85
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 161
           DNLL+QIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN
Sbjct: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 160

[Close]

BLAST of Sed0024537 vs. ExPASy TrEMBL
Match: A0A6J1BUI3 (Eukaryotic translation initiation factor 5A OS=Momordica charantia OX=3673 GN=LOC111005893 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.1e-84
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 161
           DNLLTQIKDGFAEGKDLVVSVMSAMGEEQI ALKDIGPKN
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]

BLAST of Sed0024537 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 297.7 bits (761), Expect = 5.4e-81
Identity = 146/159 (91.82%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFES +DAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT+KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG+VSLLTDNG+TKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 160
           D LL QIK GF +GKDLVVSVMSAMGEEQINALKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]

BLAST of Sed0024537 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-76
Identity = 137/159 (86.16%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFES +DAGASKTYPQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT+KKLEDIVPSSHNCDVPHVNR DYQLIDISEDGFVSLLTDNG+TKDDL+LPTD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 160
           + LLTQ+K+GF EGKD+VVSVMSAMGEEQ+ ALK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]

BLAST of Sed0024537 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 263.8 bits (673), Expect = 8.7e-71
Identity = 127/157 (80.89%), Postives = 143/157 (91.08%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKTYPQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLTD+G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIG 158
           D L  Q++ GF EGKD+VVSVMS+MGEEQI A+K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

[Close]

BLAST of Sed0024537 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 223.4 bits (568), Expect = 1.3e-58
Identity = 106/127 (83.46%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKTYPQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLTD+G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLTQI 128
           D L  Q+
Sbjct: 121 DGLTAQL 126

The following BLAST results are available for this feature:

BLAST of Sed0024537 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4370447.1	1.7e-84	98.13	hypothetical protein F8388_016184 [Cannabis sativa]	[more]
XP_030478581.1	1.7e-84	98.13	eukaryotic translation initiation factor 5A-4 [Cannabis sativa] >KAF4390105.1 hy...	[more]
PNX72413.1	1.7e-84	97.50	eukaryotic translation initiation factor 5a-2-like protein [Trifolium pratense]	[more]
XP_022133256.1	6.4e-84	98.13	eukaryotic translation initiation factor 5A-2 [Momordica charantia]	[more]
PON41654.1	6.4e-84	98.13	Translation elongation factor [Trema orientale]	[more]

BLAST of Sed0024537 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56336	8.7e-84	95.60	Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum OX=4113 GN=EI...	[more]
Q9AXQ4	1.1e-83	95.60	Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum OX=4081 PE...	[more]
P24922	2.5e-83	95.60	Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=40...	[more]
Q9AXJ4	4.3e-83	93.13	Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV...	[more]
P69039	2.1e-82	93.08	Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=40...	[more]

BLAST of Sed0024537 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2K3L1L0	8.2e-85	97.50	Eukaryotic translation initiation factor 5A OS=Trifolium pratense OX=57577 GN=L1...	[more]
A0A7J6FIK2	8.2e-85	98.13	Eukaryotic translation initiation factor 5A OS=Cannabis sativa OX=3483 GN=F8388_...	[more]
A0A7J6H4T6	8.2e-85	98.13	Eukaryotic translation initiation factor 5A OS=Cannabis sativa OX=3483 GN=G4B88_...	[more]
A0A803QB05	8.2e-85	98.13	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6J1BUI3	3.1e-84	98.13	Eukaryotic translation initiation factor 5A OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Sed0024537 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13950.1	5.4e-81	91.82	eukaryotic elongation factor 5A-1	[more]
AT1G69410.1	1.4e-76	86.16	eukaryotic elongation factor 5A-3	[more]
AT1G26630.1	8.7e-71	80.89	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]
AT1G26630.2	1.3e-58	83.46	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020189	Translation elongation factor, IF5A C-terminal	SMART	SM01376	eIF_5a_2	coord: 85..154 e-value: 3.8E-34 score: 129.4
IPR020189	Translation elongation factor, IF5A C-terminal	PFAM	PF01287	eIF-5a	coord: 85..154 e-value: 4.4E-29 score: 100.4
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..85 e-value: 1.3E-43 score: 148.8
IPR001884	Translation elongation factor IF5A-like	PIRSF	PIRSF003025	Transl_init_eIF5A	coord: 1..157 e-value: 3.6E-67 score: 222.7
IPR001884	Translation elongation factor IF5A-like	TIGRFAM	TIGR00037	TIGR00037	coord: 17..153 e-value: 1.3E-41 score: 139.4
IPR001884	Translation elongation factor IF5A-like	PANTHER	PTHR11673	TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER	coord: 1..156
None	No IPR available	GENE3D	2.40.50.140		coord: 86..159 e-value: 4.4E-34 score: 118.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR11673:SF42	BNAA07G09420D PROTEIN	coord: 1..156
None	No IPR available	CDD	cd04468	S1_eIF5A	coord: 86..156 e-value: 4.78751E-31 score: 104.927
IPR019769	Translation elongation factor, IF5A, hypusine site	PROSITE	PS00302	IF5A_HYPUSINE	coord: 50..57
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 15..93
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 86..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024537.1	Sed0024537.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045901	positive regulation of translational elongation
biological_process	GO:0045905	positive regulation of translational termination
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding